RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 C8orf76Q96K31 380 aa17.5■□□□□ 0.39
NPHP4-201ENST00000378156 USP26Q9BXU7 913 aa17.5■□□□□ 0.39
NPHP4-201ENST00000378156 ZHX3Q9H4I2 956 aa17.5■□□□□ 0.39
NPHP4-201ENST00000378156 RBM25P49756 843 aaKnown RBP17.5■□□□□ 0.39
NPHP4-201ENST00000378156 TSPYL1Q9H0U9 437 aa17.5■□□□□ 0.39
NPHP4-201ENST00000378156 EIF3JO75822 258 aaKnown RBP17.5■□□□□ 0.39
NPHP4-201ENST00000378156 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.5■□□□□ 0.399e-7■■■■■ 44.3
NPHP4-201ENST00000378156 CTCFLQ8NI51 663 aaPredicted RBP17.49■□□□□ 0.39
NPHP4-201ENST00000378156 CCT2P78371 535 aaKnown RBP17.49■□□□□ 0.39
NPHP4-201ENST00000378156 PPFIA3O75145 1194 aa17.49■□□□□ 0.39
NPHP4-201ENST00000378156 IL2RBP14784 551 aa17.49■□□□□ 0.39
NPHP4-201ENST00000378156 USP8P40818 1118 aa17.49■□□□□ 0.39
NPHP4-201ENST00000378156 LMBR1LQ6UX01 489 aa17.49■□□□□ 0.39
NPHP4-201ENST00000378156 TRMT2AQ8IZ69 625 aaKnown RBP17.49■□□□□ 0.39
NPHP4-201ENST00000378156 ANAPC15P60006 121 aa17.49■□□□□ 0.39
NPHP4-201ENST00000378156 AXDND1Q5T1B0 1012 aaPredicted RBP17.49■□□□□ 0.39
NPHP4-201ENST00000378156 BMP2KQ9NSY1 1161 aaPredicted RBP17.49■□□□□ 0.39
NPHP4-201ENST00000378156 CEP131Q9UPN4 1083 aa17.48■□□□□ 0.39
NPHP4-201ENST00000378156 IFIT3O14879 490 aaKnown RBP17.48■□□□□ 0.39
NPHP4-201ENST00000378156 LRSAM1Q6UWE0 723 aa17.48■□□□□ 0.39
NPHP4-201ENST00000378156 DDX46Q7L014 1031 aaKnown RBP17.48■□□□□ 0.39
NPHP4-201ENST00000378156 CCDC82Q8N4S0 544 aa17.48■□□□□ 0.39
NPHP4-201ENST00000378156 PA2G4Q9UQ80 394 aaKnown RBP17.48■□□□□ 0.39
NPHP4-201ENST00000378156 SLC12A7Q9Y666 1083 aa17.48■□□□□ 0.39
NPHP4-201ENST00000378156 MAP3K5Q99683 1374 aa17.48■□□□□ 0.39
NPHP4-201ENST00000378156 ZNF521Q96K83 1311 aa17.48■□□□□ 0.39
NPHP4-201ENST00000378156 HCLS1P14317 486 aaPredicted RBP17.48■□□□□ 0.39
NPHP4-201ENST00000378156 C6orf229H3BNL8 230 aa17.47■□□□□ 0.39
NPHP4-201ENST00000378156 SSBP05455 408 aaKnown RBP eCLIP17.47■□□□□ 0.39
NPHP4-201ENST00000378156 ZSCAN22P10073 491 aaPredicted RBP17.47■□□□□ 0.39
NPHP4-201ENST00000378156 UBE2HP62256 183 aa17.47■□□□□ 0.39
NPHP4-201ENST00000378156 ZNF444Q8N0Y2 327 aaPredicted RBP17.47■□□□□ 0.39
NPHP4-201ENST00000378156 CRACR2BQ8N4Y2 399 aaPredicted RBP17.47■□□□□ 0.39
NPHP4-201ENST00000378156 ZNHIT6Q9NWK9 470 aaKnown RBP17.47■□□□□ 0.39
NPHP4-201ENST00000378156 PPFIBP1Q86W92 1011 aa17.47■□□□□ 0.39
NPHP4-201ENST00000378156 PRKCSHP14314 528 aaPredicted RBP17.47■□□□□ 0.39
NPHP4-201ENST00000378156 UBAP1LF5GYI3 381 aa17.47■□□□□ 0.39
NPHP4-201ENST00000378156 ADCY5O95622 1261 aa17.47■□□□□ 0.39
NPHP4-201ENST00000378156 DDB1Q16531 1140 aa17.47■□□□□ 0.39
NPHP4-201ENST00000378156 ODF2Q5BJF6 829 aa17.47■□□□□ 0.39
NPHP4-201ENST00000378156 DCAF5Q96JK2 942 aa17.47■□□□□ 0.39
NPHP4-201ENST00000378156 CNPY2Q9Y2B0 182 aa17.47■□□□□ 0.39
NPHP4-201ENST00000378156 MPHOSPH10O00566 681 aaKnown RBP17.46■□□□□ 0.39
NPHP4-201ENST00000378156 GIMAP6Q6P9H5 292 aa17.46■□□□□ 0.39
NPHP4-201ENST00000378156 PHAXQ9H814 394 aaKnown RBP17.46■□□□□ 0.39
NPHP4-201ENST00000378156 GOLGA8BA8MQT2 603 aa17.46■□□□□ 0.39
NPHP4-201ENST00000378156 KIAA0754O94854 1291 aa17.46■□□□□ 0.39
NPHP4-201ENST00000378156 ABCA8O94911 1581 aa17.46■□□□□ 0.39
NPHP4-201ENST00000378156 RFC4P35249 363 aa17.46■□□□□ 0.39
NPHP4-201ENST00000378156 USP48Q86UV5 1035 aa17.46■□□□□ 0.39
NPHP4-201ENST00000378156 FAM177A1Q8N128 213 aaPredicted RBP17.46■□□□□ 0.39
NPHP4-201ENST00000378156 HMG20BQ9P0W2 317 aa17.46■□□□□ 0.39
NPHP4-201ENST00000378156 UQCRFS1P1P0C7P4 283 aa17.46■□□□□ 0.38
NPHP4-201ENST00000378156 CCDC152Q4G0S7 254 aa17.46■□□□□ 0.38
NPHP4-201ENST00000378156 SLF2Q8IX21 1173 aa17.46■□□□□ 0.38
NPHP4-201ENST00000378156 NEK1Q96PY6 1258 aa17.46■□□□□ 0.38
NPHP4-201ENST00000378156 SAMD9LQ8IVG5 1584 aa17.45■□□□□ 0.38
NPHP4-201ENST00000378156 PRIM1P49642 420 aaKnown RBP17.45■□□□□ 0.38
NPHP4-201ENST00000378156 CLCN1P35523 988 aa17.45■□□□□ 0.38
NPHP4-201ENST00000378156 ACSBG1Q96GR2 724 aa17.45■□□□□ 0.38
NPHP4-201ENST00000378156 RBM8AQ9Y5S9 174 aaKnown RBP17.45■□□□□ 0.38
NPHP4-201ENST00000378156 CFAP65Q6ZU64 1925 aaKnown RBP17.45■□□□□ 0.38
NPHP4-201ENST00000378156 CHMLP26374 656 aa17.45■□□□□ 0.38
NPHP4-201ENST00000378156 SEC63Q9UGP8 760 aaKnown RBP17.45■□□□□ 0.38
NPHP4-201ENST00000378156 CBFA2T2O43439 604 aa17.45■□□□□ 0.38
NPHP4-201ENST00000378156 LDHCP07864 332 aa17.45■□□□□ 0.38
NPHP4-201ENST00000378156 ATP6V1AP38606 617 aa17.45■□□□□ 0.38
NPHP4-201ENST00000378156 NBPF6Q5VWK0 638 aa17.45■□□□□ 0.38
NPHP4-201ENST00000378156 NBPF5PQ86XG9 351 aaPredicted RBP17.45■□□□□ 0.38
NPHP4-201ENST00000378156 NBPF4Q96M43 638 aa17.45■□□□□ 0.38
NPHP4-201ENST00000378156 PODXL2Q9NZ53 605 aa17.45■□□□□ 0.38
NPHP4-201ENST00000378156 DCAF8L1A6NGE4 600 aa17.44■□□□□ 0.38
NPHP4-201ENST00000378156 CHL1O00533 1208 aa17.44■□□□□ 0.38
NPHP4-201ENST00000378156 HAND2P61296 217 aa17.44■□□□□ 0.38
NPHP4-201ENST00000378156 TMEM132AQ24JP5 1023 aa17.44■□□□□ 0.38
NPHP4-201ENST00000378156 SMARCC1Q92922 1105 aaPredicted RBP17.44■□□□□ 0.38
NPHP4-201ENST00000378156 IL15P40933 162 aaPredicted RBP17.44■□□□□ 0.38
NPHP4-201ENST00000378156 EDC4Q6P2E9 1401 aaKnown RBP17.44■□□□□ 0.38
NPHP4-201ENST00000378156 GOLGA8AA7E2F4 631 aa17.44■□□□□ 0.38
NPHP4-201ENST00000378156 ATP2B3Q16720 1220 aa17.44■□□□□ 0.38
NPHP4-201ENST00000378156 ZNF76P36508 570 aa17.43■□□□□ 0.38
NPHP4-201ENST00000378156 ERVK-7P63135 1459 aa17.43■□□□□ 0.38
NPHP4-201ENST00000378156 KIF2AO00139 706 aaPredicted RBP17.43■□□□□ 0.38
NPHP4-201ENST00000378156 CWF19L2Q2TBE0 894 aaKnown RBP17.43■□□□□ 0.38
NPHP4-201ENST00000378156 RNMTO43148 476 aaKnown RBP17.43■□□□□ 0.38
NPHP4-201ENST00000378156 ZFYVE27Q5T4F4 411 aa17.43■□□□□ 0.38
NPHP4-201ENST00000378156 DDX19AQ9NUU7 478 aaKnown RBP17.43■□□□□ 0.38
NPHP4-201ENST00000378156 SMTNL1A8MU46 457 aa17.43■□□□□ 0.38
NPHP4-201ENST00000378156 PLA2R1Q13018 1463 aa17.43■□□□□ 0.38
NPHP4-201ENST00000378156 LRRC2Q9BYS8 371 aa17.42■□□□□ 0.38
NPHP4-201ENST00000378156 USP16Q9Y5T5 823 aa17.42■□□□□ 0.38
NPHP4-201ENST00000378156 KAT6BQ8WYB5 2073 aa17.42■□□□□ 0.38
NPHP4-201ENST00000378156 SBNO2Q9Y2G9 1366 aa17.42■□□□□ 0.38
NPHP4-201ENST00000378156 SOS1Q07889 1333 aaPredicted RBP17.42■□□□□ 0.38
NPHP4-201ENST00000378156 ZFYP08048 801 aaPredicted RBP17.42■□□□□ 0.38
NPHP4-201ENST00000378156 ORAI2Q96SN7 254 aa17.42■□□□□ 0.38
NPHP4-201ENST00000378156 ANO10Q9NW15 660 aa17.42■□□□□ 0.38
NPHP4-201ENST00000378156 BRF1Q92994 677 aa17.42■□□□□ 0.38
NPHP4-201ENST00000378156 TANGO6Q9C0B7 1094 aa17.42■□□□□ 0.38
NPHP4-201ENST00000378156 GOLGA6L7A0A1B0GV03 622 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms