RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 ZNF609O15014 1411 aa11.67□□□□□ -0.54
TRIM39-202ENST00000376659 SOS2Q07890 1332 aaPredicted RBP11.67□□□□□ -0.54
TRIM39-202ENST00000376659 NKX1-1Q15270 411 aaPredicted RBP11.66□□□□□ -0.54
TRIM39-202ENST00000376659 RILPL2Q969X0 211 aa11.66□□□□□ -0.54
TRIM39-202ENST00000376659 CHMP4AQ9BY43 222 aa11.66□□□□□ -0.54
TRIM39-202ENST00000376659 CHD4Q14839 1912 aa11.66□□□□□ -0.54
TRIM39-202ENST00000376659 AHDC1Q5TGY3 1603 aaPredicted RBP11.66□□□□□ -0.54
TRIM39-202ENST00000376659 SLC39A6Q13433 755 aa11.66□□□□□ -0.54
TRIM39-202ENST00000376659 ADCK5Q3MIX3 580 aa11.66□□□□□ -0.54
TRIM39-202ENST00000376659 MCTP1Q6DN14 999 aa11.66□□□□□ -0.54
TRIM39-202ENST00000376659 PROSER2Q86WR7 435 aaPredicted RBP11.66□□□□□ -0.54
TRIM39-202ENST00000376659 ALDH8A1Q9H2A2 487 aaPredicted RBP11.66□□□□□ -0.54
TRIM39-202ENST00000376659 ZSWIM6Q9HCJ5 1215 aa11.66□□□□□ -0.54
TRIM39-202ENST00000376659 ANO2Q9NQ90 1003 aa11.66□□□□□ -0.54
TRIM39-202ENST00000376659 GLRX3O76003 335 aaKnown RBP11.65□□□□□ -0.54
TRIM39-202ENST00000376659 HSP90AB4PQ58FF6 505 aa11.65□□□□□ -0.54
TRIM39-202ENST00000376659 TM6SF1Q9BZW5 370 aa11.65□□□□□ -0.54
TRIM39-202ENST00000376659 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.65□□□□□ -0.54
TRIM39-202ENST00000376659 USPL1Q5W0Q7 1092 aa11.65□□□□□ -0.54
TRIM39-202ENST00000376659 ECHDC1Q9NTX5 307 aa11.65□□□□□ -0.54
TRIM39-202ENST00000376659 TAF6LQ9Y6J9 622 aa11.65□□□□□ -0.54
TRIM39-202ENST00000376659 AK2P54819 239 aa11.65□□□□□ -0.54
TRIM39-202ENST00000376659 CNTROBQ8N137 903 aa11.65□□□□□ -0.54
TRIM39-202ENST00000376659 NFATC2IPQ8NCF5 419 aa11.65□□□□□ -0.54
TRIM39-202ENST00000376659 MAP4K1Q92918 833 aa11.65□□□□□ -0.54
TRIM39-202ENST00000376659 DCAF5Q96JK2 942 aa11.65□□□□□ -0.54
TRIM39-202ENST00000376659 COPRSQ9NQ92 184 aa11.65□□□□□ -0.54
TRIM39-202ENST00000376659 COL4A1P02462 1669 aa11.64□□□□□ -0.55
TRIM39-202ENST00000376659 NBPF26B4DH59 902 aa11.64□□□□□ -0.55
TRIM39-202ENST00000376659 CLCN1P35523 988 aa11.64□□□□□ -0.55
TRIM39-202ENST00000376659 PTPN12Q05209 780 aaKnown RBP11.64□□□□□ -0.55
TRIM39-202ENST00000376659 NBPF14Q5TI25 921 aa11.64□□□□□ -0.55
TRIM39-202ENST00000376659 NBPF10Q6P3W6 841 aaKnown RBP11.64□□□□□ -0.55
TRIM39-202ENST00000376659 BRINP3Q76B58 766 aa11.64□□□□□ -0.55
TRIM39-202ENST00000376659 NBPF15Q8N660 670 aa11.64□□□□□ -0.55
TRIM39-202ENST00000376659 USP16Q9Y5T5 823 aa11.64□□□□□ -0.55
TRIM39-202ENST00000376659 TIAM2Q8IVF5 1701 aa11.64□□□□□ -0.55
TRIM39-202ENST00000376659 TRIM6-TRIM34B2RNG4 842 aa11.64□□□□□ -0.55
TRIM39-202ENST00000376659 FOXO4P98177 505 aa11.64□□□□□ -0.55
TRIM39-202ENST00000376659 TSGA10IPQ3SY00 556 aa11.64□□□□□ -0.55
TRIM39-202ENST00000376659 UPF3BQ9BZI7 483 aaKnown RBP11.64□□□□□ -0.55
TRIM39-202ENST00000376659 CCDC171Q6TFL3 1326 aa11.64□□□□□ -0.55
TRIM39-202ENST00000376659 ZC3H6P61129 1189 aaKnown RBP11.64□□□□□ -0.55
TRIM39-202ENST00000376659 RBSNQ9H1K0 784 aa11.64□□□□□ -0.55
TRIM39-202ENST00000376659 PALLDQ8WX93 1383 aa11.63□□□□□ -0.55
TRIM39-202ENST00000376659 ERC1Q8IUD2 1116 aa11.63□□□□□ -0.55
TRIM39-202ENST00000376659 XAGE3Q8WTP9 111 aa11.63□□□□□ -0.55
TRIM39-202ENST00000376659 A0A0D9SFI3 127 aa11.63□□□□□ -0.55
TRIM39-202ENST00000376659 RBM27Q9P2N5 1060 aaKnown RBP11.63□□□□□ -0.55
TRIM39-202ENST00000376659 WDR17Q8IZU2 1322 aa11.63□□□□□ -0.55
TRIM39-202ENST00000376659 IFNL2Q8IZJ0 200 aa11.63□□□□□ -0.55
TRIM39-202ENST00000376659 EVI5LQ96CN4 794 aa11.63□□□□□ -0.55
TRIM39-202ENST00000376659 FAM227BQ96M60 508 aa11.62□□□□□ -0.55
TRIM39-202ENST00000376659 SPG7Q9UQ90 795 aa11.62□□□□□ -0.55
TRIM39-202ENST00000376659 VPS53Q5VIR6 699 aa11.62□□□□□ -0.55
TRIM39-202ENST00000376659 KLHDC4Q8TBB5 520 aa11.62□□□□□ -0.55
TRIM39-202ENST00000376659 CABLES1Q8TDN4 633 aa11.62□□□□□ -0.55
TRIM39-202ENST00000376659 RIC1Q4ADV7 1423 aa11.62□□□□□ -0.55
TRIM39-202ENST00000376659 DBNLQ9UJU6 430 aaKnown RBP11.61□□□□□ -0.55
TRIM39-202ENST00000376659 ATG9AQ7Z3C6 839 aa11.61□□□□□ -0.55
TRIM39-202ENST00000376659 ZNF589Q86UQ0 364 aaPredicted RBP11.61□□□□□ -0.55
TRIM39-202ENST00000376659 CPA1P15085 419 aa11.61□□□□□ -0.55
TRIM39-202ENST00000376659 MCCP23508 829 aa11.61□□□□□ -0.55
TRIM39-202ENST00000376659 PRIM1P49642 420 aaKnown RBP11.61□□□□□ -0.55
TRIM39-202ENST00000376659 NMIQ13287 307 aaPredicted RBP11.61□□□□□ -0.55
TRIM39-202ENST00000376659 LARP1Q6PKG0 1096 aaKnown RBP11.61□□□□□ -0.55
TRIM39-202ENST00000376659 CWC27Q6UX04 472 aaKnown RBP11.61□□□□□ -0.55
TRIM39-202ENST00000376659 H7C1W4 665 aa11.6□□□□□ -0.55
TRIM39-202ENST00000376659 AEBP2Q6ZN18 517 aaPredicted RBP11.6□□□□□ -0.55
TRIM39-202ENST00000376659 COPS6Q7L5N1 327 aa11.6□□□□□ -0.55
TRIM39-202ENST00000376659 FUCA2Q9BTY2 467 aa11.6□□□□□ -0.55
TRIM39-202ENST00000376659 DLEC1Q9Y238 1755 aa11.6□□□□□ -0.55
TRIM39-202ENST00000376659 GADD45BO75293 160 aaPredicted RBP11.6□□□□□ -0.55
TRIM39-202ENST00000376659 SNRPA1P09661 255 aaKnown RBP11.6□□□□□ -0.55
TRIM39-202ENST00000376659 TATP17735 454 aaPredicted RBP11.6□□□□□ -0.55
TRIM39-202ENST00000376659 TOB2Q14106 344 aaPredicted RBP11.6□□□□□ -0.55
TRIM39-202ENST00000376659 LRSAM1Q6UWE0 723 aa11.6□□□□□ -0.55
TRIM39-202ENST00000376659 DDX49Q9Y6V7 483 aaKnown RBP11.6□□□□□ -0.55
TRIM39-202ENST00000376659 SCN7AQ01118 1682 aa11.6□□□□□ -0.55
TRIM39-202ENST00000376659 PRPF40AO75400 957 aaKnown RBP11.6□□□□□ -0.55
TRIM39-202ENST00000376659 HSP90AA1P07900 732 aaKnown RBP11.6□□□□□ -0.55
TRIM39-202ENST00000376659 CAVIN1Q6NZI2 390 aaKnown RBP11.6□□□□□ -0.55
TRIM39-202ENST00000376659 KIAA1551Q9HCM1 1747 aa11.59□□□□□ -0.55
TRIM39-202ENST00000376659 PDIA4P13667 645 aaKnown RBP11.59□□□□□ -0.55
TRIM39-202ENST00000376659 ATP5JP18859 108 aa11.59□□□□□ -0.55
TRIM39-202ENST00000376659 AACSQ86V21 672 aa11.59□□□□□ -0.55
TRIM39-202ENST00000376659 SLC27A2O14975 620 aa11.59□□□□□ -0.55
TRIM39-202ENST00000376659 CREB3L3Q68CJ9 461 aa11.59□□□□□ -0.55
TRIM39-202ENST00000376659 CLASRPQ8N2M8 674 aaKnown RBP11.59□□□□□ -0.55
TRIM39-202ENST00000376659 ZBTB7CA1YPR0 619 aa11.59□□□□□ -0.55
TRIM39-202ENST00000376659 CHGBP05060 677 aa11.59□□□□□ -0.55
TRIM39-202ENST00000376659 PLBD2Q8NHP8 589 aa11.59□□□□□ -0.55
TRIM39-202ENST00000376659 C9orf78Q9NZ63 289 aaPredicted RBP11.59□□□□□ -0.55
TRIM39-202ENST00000376659 LIMCH1Q9UPQ0 1083 aa11.59□□□□□ -0.55
TRIM39-202ENST00000376659 PCDH11XQ9BZA7 1347 aa11.58□□□□□ -0.56
TRIM39-202ENST00000376659 PCDH11YQ9BZA8 1340 aa11.58□□□□□ -0.56
TRIM39-202ENST00000376659 CCDC173Q0VFZ6 552 aa11.58□□□□□ -0.56
TRIM39-202ENST00000376659 CHRNA2Q15822 529 aa11.58□□□□□ -0.56
TRIM39-202ENST00000376659 ME3Q16798 604 aa11.58□□□□□ -0.56
TRIM39-202ENST00000376659 TNNI3KQ59H18 835 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms