RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 ANKRD24Q8TF21 1146 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 NACAP1Q9BZK3 213 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 MRPL46Q9H2W6 279 aaKnown RBP5.3□□□□□ -1.56
SCN1A-202ENST00000375405 SPATS2LQ9NUQ6 558 aaKnown RBP5.3□□□□□ -1.56
SCN1A-202ENST00000375405 A0A1B0GUL7 405 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 KRT33BQ14525 404 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 SLC4A8Q2Y0W8 1093 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 GOLGA1Q92805 767 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 DACH1Q9UI36 760 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 SYCE3A1L190 88 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 MYO1BO43795 1136 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 USO1O60763 962 aaKnown RBP5.29□□□□□ -1.56
SCN1A-202ENST00000375405 HSPA1LP34931 641 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 MUM1L1Q5H9M0 696 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 SPECC1LQ69YQ0 1117 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 JMYQ8N9B5 988 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 GANCQ8TET4 914 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 TBC1D22AQ8WUA7 517 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 DNAJC7Q99615 494 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 FSD1Q9BTV5 496 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 MKNK2Q9HBH9 465 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 LMCD1Q9NZU5 365 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 MYCP01106 439 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-202ENST00000375405 PPP1R21Q6ZMI0 780 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 MAK16Q9BXY0 300 aaKnown RBP5.29□□□□□ -1.56
SCN1A-202ENST00000375405 PRKAG2Q9UGJ0 569 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 MKL2Q9ULH7 1088 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 TDRD12Q587J7 1177 aaKnown RBP5.29□□□□□ -1.56
SCN1A-202ENST00000375405 MSANTD4Q8NCY6 345 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 GEMIN8Q9NWZ8 242 aaKnown RBP5.29□□□□□ -1.56
SCN1A-202ENST00000375405 CALCOCO1Q9P1Z2 691 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 MYO10Q9HD67 2058 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 STX6O43752 255 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 PYGLP06737 847 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 SLFN14P0C7P3 912 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 CCDC92Q53HC0 331 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-202ENST00000375405 GPHNQ9NQX3 736 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-202ENST00000375405 EXOC1Q9NV70 894 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 UBXN8O00124 270 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 CASQ2O14958 399 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-202ENST00000375405 ZFYP08048 801 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-202ENST00000375405 FKBP4Q02790 459 aaKnown RBP eCLIP5.29□□□□□ -1.56
SCN1A-202ENST00000375405 TMX1Q9H3N1 280 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 TMEM110-MUSTN1A8MSY1 372 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 ZPR1O75312 459 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 ABCF2Q9UG63 623 aa5.29□□□□□ -1.56
SCN1A-202ENST00000375405 SNUPNO95149 360 aaKnown RBP5.28□□□□□ -1.56
SCN1A-202ENST00000375405 EEF2P13639 858 aaKnown RBP5.28□□□□□ -1.56
SCN1A-202ENST00000375405 CNGA1P29973 690 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 IL1RL1Q01638 556 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 APOBRQ0VD83 1088 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 IMMTQ16891 758 aaKnown RBP5.28□□□□□ -1.56
SCN1A-202ENST00000375405 NUTM1Q86Y26 1132 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 ZNF654Q8IZM8 581 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 KIFC2Q96AC6 838 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 UBAC1Q9BSL1 405 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 PDCLQ13371 301 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 NUB1Q9Y5A7 615 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 RSF1Q96T23 1441 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-202ENST00000375405 PLCB3Q01970 1234 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 NBPF6Q5VWK0 638 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 UBE3BQ7Z3V4 1068 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 NBPF4Q96M43 638 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 TRIM7Q9C029 511 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 PRKRIP1Q9H875 184 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-202ENST00000375405 KIF9Q9HAQ2 790 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 GINS2Q9Y248 185 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.28□□□□□ -1.56
SCN1A-202ENST00000375405 RELL1Q8IUW5 271 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 SUPT3HB4E1H0 165 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 KLHL10Q6JEL2 608 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 MAATS1Q7Z4T9 603 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 TRAF3IP1Q8TDR0 691 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-202ENST00000375405 COG3Q96JB2 828 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 PNMA2Q9UL42 364 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 UAP1Q16222 522 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-202ENST00000375405 INF2Q27J81 1249 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 SKOR2Q2VWA4 1001 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-202ENST00000375405 CFAP100Q494V2 611 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 C10orf67Q8IYJ2 551 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 ATP6V0A1Q93050 837 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 NEUROG2Q9H2A3 272 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 PASD1Q8IV76 773 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 NAP1L4Q99733 375 aaKnown RBP5.28□□□□□ -1.56
SCN1A-202ENST00000375405 ABCF3Q9NUQ8 709 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 COG6Q9Y2V7 657 aa5.28□□□□□ -1.56
SCN1A-202ENST00000375405 WBP4O75554 376 aaKnown RBP5.27□□□□□ -1.57
SCN1A-202ENST00000375405 NPR1P16066 1061 aa5.27□□□□□ -1.57
SCN1A-202ENST00000375405 PSMA5P28066 241 aa5.27□□□□□ -1.57
SCN1A-202ENST00000375405 HP1BP3Q5SSJ5 553 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-202ENST00000375405 L3MBTL3Q96JM7 780 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-202ENST00000375405 ZBTB12Q9Y330 459 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-202ENST00000375405 GOLGA4Q13439 2230 aaKnown RBP5.27□□□□□ -1.57
SCN1A-202ENST00000375405 ZBTB17Q13105 803 aa5.27□□□□□ -1.57
SCN1A-202ENST00000375405 ARHGAP29Q52LW3 1261 aa5.27□□□□□ -1.57
SCN1A-202ENST00000375405 RBM26Q5T8P6 1007 aaKnown RBP5.27□□□□□ -1.57
SCN1A-202ENST00000375405 ZNF396Q96N95 335 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-202ENST00000375405 MX2P20592 715 aa5.27□□□□□ -1.57
SCN1A-202ENST00000375405 ZNF75DP51815 510 aa5.27□□□□□ -1.57
SCN1A-202ENST00000375405 CCDC38Q502W7 563 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms