RNA–Protein interactions for RNA: ENST00000374490.7

HMGCL-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCL, Length 1,600 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-203ENST00000374490 BRD1O95696 1058 aa16.85■□□□□ 0.29
HMGCL-203ENST00000374490 MBD3O95983 291 aa16.85■□□□□ 0.29
HMGCL-203ENST00000374490 KIAA1211Q6ZU35 1233 aa16.85■□□□□ 0.29
HMGCL-203ENST00000374490 RRAGDQ9NQL2 400 aaPredicted RBP16.85■□□□□ 0.29
HMGCL-203ENST00000374490 C9orf78Q9NZ63 289 aaPredicted RBP16.85■□□□□ 0.29
HMGCL-203ENST00000374490 ZDHHC9Q9Y397 364 aa16.85■□□□□ 0.29
HMGCL-203ENST00000374490 LINS1Q8NG48 757 aa16.85■□□□□ 0.29
HMGCL-203ENST00000374490 DDX21Q9NR30 783 aaKnown RBP eCLIP16.85■□□□□ 0.29
HMGCL-203ENST00000374490 MAP3K2Q9Y2U5 619 aa16.85■□□□□ 0.29
HMGCL-203ENST00000374490 UTYO14607 1347 aa16.84■□□□□ 0.29
HMGCL-203ENST00000374490 CLCN1P35523 988 aa16.84■□□□□ 0.29
HMGCL-203ENST00000374490 TRIM44Q96DX7 344 aaPredicted RBP16.84■□□□□ 0.29
HMGCL-203ENST00000374490 KDM6AO15550 1401 aaPredicted RBP16.83■□□□□ 0.29
HMGCL-203ENST00000374490 IL2RBP14784 551 aa16.83■□□□□ 0.28
HMGCL-203ENST00000374490 NASPP49321 788 aaPredicted RBP16.83■□□□□ 0.28
HMGCL-203ENST00000374490 PKP1Q13835 747 aa16.83■□□□□ 0.28
HMGCL-203ENST00000374490 ECHDC1Q9NTX5 307 aa16.83■□□□□ 0.28
HMGCL-203ENST00000374490 PCDH11XQ9BZA7 1347 aa16.83■□□□□ 0.28
HMGCL-203ENST00000374490 PCDH11YQ9BZA8 1340 aa16.83■□□□□ 0.28
HMGCL-203ENST00000374490 DDB1Q16531 1140 aa16.82■□□□□ 0.28
HMGCL-203ENST00000374490 DCAF5Q96JK2 942 aa16.82■□□□□ 0.28
HMGCL-203ENST00000374490 PPP1R9BQ96SB3 815 aa16.82■□□□□ 0.28
HMGCL-203ENST00000374490 HIP1O00291 1037 aa16.81■□□□□ 0.28
HMGCL-203ENST00000374490 NCLP19338 710 aaKnown RBP16.81■□□□□ 0.28
HMGCL-203ENST00000374490 ZSCAN23Q3MJ62 389 aa16.81■□□□□ 0.28
HMGCL-203ENST00000374490 CAVIN1Q6NZI2 390 aaKnown RBP16.81■□□□□ 0.28
HMGCL-203ENST00000374490 ZCRB1Q8TBF4 217 aaKnown RBP16.81■□□□□ 0.28
HMGCL-203ENST00000374490 LSG1Q9H089 658 aaKnown RBP16.81■□□□□ 0.28
HMGCL-203ENST00000374490 DIAPH3Q9NSV4 1193 aa16.81■□□□□ 0.28
HMGCL-203ENST00000374490 WDR33Q9C0J8 1336 aaKnown RBP16.81■□□□□ 0.28
HMGCL-203ENST00000374490 MRC1P22897 1456 aa16.81■□□□□ 0.28
HMGCL-203ENST00000374490 CYP27B1O15528 508 aa16.81■□□□□ 0.28
HMGCL-203ENST00000374490 PRPF40AO75400 957 aaKnown RBP16.81■□□□□ 0.28
HMGCL-203ENST00000374490 IFIT2P09913 472 aaKnown RBP16.81■□□□□ 0.28
HMGCL-203ENST00000374490 AK9Q5TCS8 1911 aa16.81■□□□□ 0.28
HMGCL-203ENST00000374490 SLC52A2Q9HAB3 445 aa16.81■□□□□ 0.28
HMGCL-203ENST00000374490 GRM8O00222 908 aa16.8■□□□□ 0.28
HMGCL-203ENST00000374490 ANXA1P04083 346 aa16.8■□□□□ 0.28
HMGCL-203ENST00000374490 EVI5LQ96CN4 794 aa16.8■□□□□ 0.28
HMGCL-203ENST00000374490 SNX14Q9Y5W7 946 aa16.8■□□□□ 0.28
HMGCL-203ENST00000374490 SYAP1Q96A49 352 aaPredicted RBP16.79■□□□□ 0.28
HMGCL-203ENST00000374490 CDCA7Q9BWT1 371 aaPredicted RBP16.79■□□□□ 0.28
HMGCL-203ENST00000374490 ESPNB1AK53 854 aa16.78■□□□□ 0.28
HMGCL-203ENST00000374490 NEXNQ0ZGT2 675 aa16.78■□□□□ 0.28
HMGCL-203ENST00000374490 PROSER3Q2NL68 480 aa16.78■□□□□ 0.28
HMGCL-203ENST00000374490 UPF3BQ9BZI7 483 aaKnown RBP16.78■□□□□ 0.28
HMGCL-203ENST00000374490 PPP1R1BQ9UD71 204 aaPredicted RBP16.78■□□□□ 0.28
HMGCL-203ENST00000374490 SHANK3Q9BYB0 1731 aa16.78■□□□□ 0.28
HMGCL-203ENST00000374490 G3BP1Q13283 466 aaKnown RBP eCLIP16.78■□□□□ 0.28
HMGCL-203ENST00000374490 KCNB2Q92953 911 aa16.78■□□□□ 0.28
HMGCL-203ENST00000374490 TTC14Q96N46 770 aa16.78■□□□□ 0.28
HMGCL-203ENST00000374490 TM6SF1Q9BZW5 370 aa16.78■□□□□ 0.28
HMGCL-203ENST00000374490 SPON1Q9HCB6 807 aa16.78■□□□□ 0.28
HMGCL-203ENST00000374490 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.78■□□□□ 0.28
HMGCL-203ENST00000374490 PLSCR1O15162 318 aa16.77■□□□□ 0.27
HMGCL-203ENST00000374490 MAP4K4O95819 1239 aaPredicted RBP16.77■□□□□ 0.27
HMGCL-203ENST00000374490 CABP4P57796 275 aa16.77■□□□□ 0.27
HMGCL-203ENST00000374490 GPT2Q8TD30 523 aa16.77■□□□□ 0.27
HMGCL-203ENST00000374490 BCL11BQ9C0K0 894 aaPredicted RBP16.77■□□□□ 0.27
HMGCL-203ENST00000374490 IL25Q9H293 177 aa16.77■□□□□ 0.27
HMGCL-203ENST00000374490 LIMCH1Q9UPQ0 1083 aa16.77■□□□□ 0.27
HMGCL-203ENST00000374490 ZNF790Q6PG37 636 aa16.76■□□□□ 0.27
HMGCL-203ENST00000374490 TTC5Q8N0Z6 440 aa16.76■□□□□ 0.27
HMGCL-203ENST00000374490 NFATC2IPQ8NCF5 419 aa16.76■□□□□ 0.27
HMGCL-203ENST00000374490 SUCLG2Q96I99 432 aa16.76■□□□□ 0.27
HMGCL-203ENST00000374490 ZSCAN31Q96LW9 406 aaPredicted RBP16.76■□□□□ 0.27
HMGCL-203ENST00000374490 WNK3Q9BYP7 1800 aa16.75■□□□□ 0.27
HMGCL-203ENST00000374490 KCNQ2O43526 872 aa16.75■□□□□ 0.27
HMGCL-203ENST00000374490 PDIA6Q15084 440 aa16.75■□□□□ 0.27
HMGCL-203ENST00000374490 HS1BP3Q53T59 392 aa16.75■□□□□ 0.27
HMGCL-203ENST00000374490 LRSAM1Q6UWE0 723 aa16.75■□□□□ 0.27
HMGCL-203ENST00000374490 CWC27Q6UX04 472 aaKnown RBP16.75■□□□□ 0.27
HMGCL-203ENST00000374490 RIC3Q7Z5B4 369 aa16.75■□□□□ 0.27
HMGCL-203ENST00000374490 AACSQ86V21 672 aa16.75■□□□□ 0.27
HMGCL-203ENST00000374490 KLHL34Q8N239 644 aa16.75■□□□□ 0.27
HMGCL-203ENST00000374490 COL15A1P39059 1388 aa16.75■□□□□ 0.27
HMGCL-203ENST00000374490 PHF14O94880 888 aa16.74■□□□□ 0.27
HMGCL-203ENST00000374490 PDIA4P13667 645 aaKnown RBP16.74■□□□□ 0.27
HMGCL-203ENST00000374490 CWF19L2Q2TBE0 894 aaKnown RBP16.74■□□□□ 0.27
HMGCL-203ENST00000374490 NOL8Q76FK4 1167 aaKnown RBP16.74■□□□□ 0.27
HMGCL-203ENST00000374490 SH2B1Q9NRF2 756 aaPredicted RBP16.74■□□□□ 0.27
HMGCL-203ENST00000374490 SNRKQ9NRH2 765 aa16.74■□□□□ 0.27
HMGCL-203ENST00000374490 DCAF8L1A6NGE4 600 aa16.74■□□□□ 0.27
HMGCL-203ENST00000374490 VPS53Q5VIR6 699 aa16.74■□□□□ 0.27
HMGCL-203ENST00000374490 TMEM87AQ8NBN3 555 aa16.74■□□□□ 0.27
HMGCL-203ENST00000374490 DDX54Q8TDD1 881 aaKnown RBP16.74■□□□□ 0.27
HMGCL-203ENST00000374490 ATP6V1DQ9Y5K8 247 aa16.74■□□□□ 0.27
HMGCL-203ENST00000374490 RREB1Q92766 1687 aa16.73■□□□□ 0.27
HMGCL-203ENST00000374490 METTL22Q9BUU2 404 aaPredicted RBP16.73■□□□□ 0.27
HMGCL-203ENST00000374490 BICC1Q9H694 974 aaKnown RBP16.73■□□□□ 0.27
HMGCL-203ENST00000374490 C5P01031 1676 aa16.72■□□□□ 0.27
HMGCL-203ENST00000374490 NEURL1BA8MQ27 555 aa16.72■□□□□ 0.27
HMGCL-203ENST00000374490 ERVV-2B6SEH9 535 aa16.72■□□□□ 0.27
HMGCL-203ENST00000374490 ZKSCAN1P17029 563 aaPredicted RBP16.72■□□□□ 0.27
HMGCL-203ENST00000374490 AK2P54819 239 aa16.72■□□□□ 0.27
HMGCL-203ENST00000374490 SLC39A6Q13433 755 aa16.72■□□□□ 0.27
HMGCL-203ENST00000374490 NKX1-1Q15270 411 aaPredicted RBP16.72■□□□□ 0.27
HMGCL-203ENST00000374490 MARCH10Q8NA82 808 aaPredicted RBP16.72■□□□□ 0.27
HMGCL-203ENST00000374490 PA2G4Q9UQ80 394 aaKnown RBP16.72■□□□□ 0.27
HMGCL-203ENST00000374490 RPAP1Q9BWH6 1393 aaPredicted RBP16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms