RNA–Protein interactions for RNA: ENST00000374346.7

PTPN20-204, Transcript of protein tyrosine phosphatase, non-receptor type 20, human

TSL 1 (best) BASIC

Gene PTPN20, Length 2,481 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN20-204	ENST00000374346	LARP1	Q6PKG0	1096 aa	Known RBP	13.61	□□□□□ -0.23
PTPN20-204	ENST00000374346	RIC3	Q7Z5B4	369 aa		13.61	□□□□□ -0.23
PTPN20-204	ENST00000374346	FSD1	Q9BTV5	496 aa		13.61	□□□□□ -0.23
PTPN20-204	ENST00000374346	BICC1	Q9H694	974 aa	Known RBP	13.61	□□□□□ -0.23
PTPN20-204	ENST00000374346	HMG20B	Q9P0W2	317 aa		13.61	□□□□□ -0.23
PTPN20-204	ENST00000374346	USP25	Q9UHP3	1055 aa		13.61	□□□□□ -0.23
PTPN20-204	ENST00000374346	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
PTPN20-204	ENST00000374346	UQCRHL	A0A096LP55	91 aa		13.6	□□□□□ -0.23
PTPN20-204	ENST00000374346	LARGE1	O95461	756 aa		13.6	□□□□□ -0.23
PTPN20-204	ENST00000374346	UQCRH	P07919	91 aa		13.6	□□□□□ -0.23
PTPN20-204	ENST00000374346	ME3	Q16798	604 aa		13.6	□□□□□ -0.23
PTPN20-204	ENST00000374346	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.6	□□□□□ -0.23
PTPN20-204	ENST00000374346	BLOC1S2	Q6QNY1	142 aa		13.6	□□□□□ -0.23
PTPN20-204	ENST00000374346	MTERF4	Q7Z6M4	381 aa	Known RBP	13.6	□□□□□ -0.23
PTPN20-204	ENST00000374346	SNRK	Q9NRH2	765 aa		13.6	□□□□□ -0.23
PTPN20-204	ENST00000374346	LMTK3	Q96Q04	1460 aa		13.6	□□□□□ -0.23
PTPN20-204	ENST00000374346	SIPA1L3	O60292	1781 aa	Predicted RBP	13.6	□□□□□ -0.23
PTPN20-204	ENST00000374346	PXDN	Q92626	1479 aa		13.6	□□□□□ -0.23
PTPN20-204	ENST00000374346	ADCY5	O95622	1261 aa		13.59	□□□□□ -0.23
PTPN20-204	ENST00000374346	SUCLG2	Q96I99	432 aa		13.59	□□□□□ -0.23
PTPN20-204	ENST00000374346	DYNC1I1	O14576	645 aa		13.59	□□□□□ -0.23
PTPN20-204	ENST00000374346	KDM4A	O75164	1064 aa		13.59	□□□□□ -0.23
PTPN20-204	ENST00000374346	SASH1	O94885	1247 aa		13.59	□□□□□ -0.23
PTPN20-204	ENST00000374346	TPM3	P06753	285 aa		13.59	□□□□□ -0.23
PTPN20-204	ENST00000374346	CCDC192	P0DO97	292 aa		13.59	□□□□□ -0.23
PTPN20-204	ENST00000374346	AIMP1	Q12904	312 aa	Known RBP	13.59	□□□□□ -0.23
PTPN20-204	ENST00000374346	NMI	Q13287	307 aa	Predicted RBP	13.59	□□□□□ -0.23
PTPN20-204	ENST00000374346	TPRN	Q4KMQ1	711 aa		13.59	□□□□□ -0.23
PTPN20-204	ENST00000374346	EAF2	Q96CJ1	260 aa	Predicted RBP	13.59	□□□□□ -0.23
PTPN20-204	ENST00000374346	SLIT3	O75094	1523 aa		13.59	□□□□□ -0.23
PTPN20-204	ENST00000374346	CCDC8	Q9H0W5	538 aa	Predicted RBP	13.58	□□□□□ -0.23
PTPN20-204	ENST00000374346	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.58	□□□□□ -0.23
PTPN20-204	ENST00000374346	SLC27A2	O14975	620 aa		13.58	□□□□□ -0.24
PTPN20-204	ENST00000374346	KRT32	Q14532	448 aa		13.58	□□□□□ -0.24
PTPN20-204	ENST00000374346	LMOD2	Q6P5Q4	547 aa		13.58	□□□□□ -0.24
PTPN20-204	ENST00000374346	FAM227B	Q96M60	508 aa		13.58	□□□□□ -0.24
PTPN20-204	ENST00000374346	ELP1	O95163	1332 aa		13.58	□□□□□ -0.24
PTPN20-204	ENST00000374346	CAMTA1	Q9Y6Y1	1673 aa		13.58	□□□□□ -0.24
PTPN20-204	ENST00000374346	GOLGA6L4	A6NEF3	574 aa		13.57	□□□□□ -0.24
PTPN20-204	ENST00000374346	GOLGA6L6	A8MZA4	724 aa		13.57	□□□□□ -0.24
PTPN20-204	ENST00000374346	PIBF1	Q8WXW3	757 aa		13.57	□□□□□ -0.24
PTPN20-204	ENST00000374346	SCAND2P	Q9GZW5	306 aa	Predicted RBP	13.57	□□□□□ -0.24
PTPN20-204	ENST00000374346	BOLA2	Q9H3K6	86 aa		13.57	□□□□□ -0.24
PTPN20-204	ENST00000374346	TPCN1	Q9ULQ1	816 aa		13.57	□□□□□ -0.24
PTPN20-204	ENST00000374346	HMGN5	P82970	282 aa	Known RBP	13.56	□□□□□ -0.24
PTPN20-204	ENST00000374346	GIMAP6	Q6P9H5	292 aa		13.56	□□□□□ -0.24
PTPN20-204	ENST00000374346	NECAB1	Q8N987	351 aa		13.56	□□□□□ -0.24
PTPN20-204	ENST00000374346	KAZALD1	Q96I82	304 aa		13.56	□□□□□ -0.24
PTPN20-204	ENST00000374346	SIL1	Q9H173	461 aa		13.56	□□□□□ -0.24
PTPN20-204	ENST00000374346	RPS6KB1	P23443	525 aa		13.56	□□□□□ -0.24
PTPN20-204	ENST00000374346	PLCB2	Q00722	1185 aa		13.56	□□□□□ -0.24
PTPN20-204	ENST00000374346	TSGA10IP	Q3SY00	556 aa		13.56	□□□□□ -0.24
PTPN20-204	ENST00000374346	ZNF790	Q6PG37	636 aa		13.56	□□□□□ -0.24
PTPN20-204	ENST00000374346	RAPGEF4	Q8WZA2	1011 aa		13.56	□□□□□ -0.24
PTPN20-204	ENST00000374346	RBM33	Q96EV2	1170 aa	Known RBP	13.56	□□□□□ -0.24
PTPN20-204	ENST00000374346	FUCA2	Q9BTY2	467 aa		13.56	□□□□□ -0.24
PTPN20-204	ENST00000374346	ADAMTS7	Q9UKP4	1686 aa		13.56	□□□□□ -0.24
PTPN20-204	ENST00000374346	PRAMEF22	A3QJZ6	481 aa		13.55	□□□□□ -0.24
PTPN20-204	ENST00000374346	PRIMPOL	Q96LW4	560 aa		13.55	□□□□□ -0.24
PTPN20-204	ENST00000374346	FAM13B	Q9NYF5	915 aa		13.55	□□□□□ -0.24
PTPN20-204	ENST00000374346	MED23	Q9ULK4	1368 aa		13.55	□□□□□ -0.24
PTPN20-204	ENST00000374346		A0A0D9SFI3	127 aa		13.55	□□□□□ -0.24
PTPN20-204	ENST00000374346	NEURL1B	A8MQ27	555 aa		13.55	□□□□□ -0.24
PTPN20-204	ENST00000374346	GCKR	Q14397	625 aa		13.55	□□□□□ -0.24
PTPN20-204	ENST00000374346	MAP3K11	Q16584	847 aa		13.55	□□□□□ -0.24
PTPN20-204	ENST00000374346	NUP62CL	Q9H1M0	184 aa		13.55	□□□□□ -0.24
PTPN20-204	ENST00000374346	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
PTPN20-204	ENST00000374346	METTL22	Q9BUU2	404 aa	Predicted RBP	13.54	□□□□□ -0.24
PTPN20-204	ENST00000374346	MRC1	P22897	1456 aa		13.54	□□□□□ -0.24
PTPN20-204	ENST00000374346	IGKV5-2	P06315	115 aa		13.54	□□□□□ -0.24
PTPN20-204	ENST00000374346	ST3GAL1	Q11201	340 aa		13.54	□□□□□ -0.24
PTPN20-204	ENST00000374346	PDIA6	Q15084	440 aa		13.54	□□□□□ -0.24
PTPN20-204	ENST00000374346	SLC52A2	Q9HAB3	445 aa		13.54	□□□□□ -0.24
PTPN20-204	ENST00000374346	RFX7	Q2KHR2	1363 aa		13.54	□□□□□ -0.24
PTPN20-204	ENST00000374346	ZNF142	P52746	1687 aa	Predicted RBP	13.54	□□□□□ -0.24
PTPN20-204	ENST00000374346	MYL6B	P14649	208 aa		13.53	□□□□□ -0.24
PTPN20-204	ENST00000374346	DDX54	Q8TDD1	881 aa	Known RBP	13.53	□□□□□ -0.24
PTPN20-204	ENST00000374346	COPRS	Q9NQ92	184 aa		13.53	□□□□□ -0.24
PTPN20-204	ENST00000374346	TLR7	Q9NYK1	1049 aa	Known RBP	13.53	□□□□□ -0.24
PTPN20-204	ENST00000374346	NPHP3	Q7Z494	1330 aa		13.53	□□□□□ -0.24
PTPN20-204	ENST00000374346	SCN11A	Q9UI33	1791 aa		13.53	□□□□□ -0.24
PTPN20-204	ENST00000374346	NPHP4	O75161	1426 aa	Predicted RBP	13.53	□□□□□ -0.24
PTPN20-204	ENST00000374346	JCAD	Q9P266	1359 aa		13.53	□□□□□ -0.24
PTPN20-204	ENST00000374346	ATP5J	P18859	108 aa		13.53	□□□□□ -0.24
PTPN20-204	ENST00000374346	RBM10	P98175	930 aa	Known RBP	13.53	□□□□□ -0.24
PTPN20-204	ENST00000374346	CDC37L1	Q7L3B6	337 aa		13.53	□□□□□ -0.24
PTPN20-204	ENST00000374346	FAM200A	Q8TCP9	573 aa		13.53	□□□□□ -0.24
PTPN20-204	ENST00000374346	SPATA32	Q96LK8	384 aa		13.53	□□□□□ -0.24
PTPN20-204	ENST00000374346	ORAI2	Q96SN7	254 aa		13.53	□□□□□ -0.24
PTPN20-204	ENST00000374346	MYD88	Q99836	296 aa		13.53	□□□□□ -0.24
PTPN20-204	ENST00000374346	ERBB3	P21860	1342 aa		13.52	□□□□□ -0.24
PTPN20-204	ENST00000374346	ANKRD13D	Q6ZTN6	518 aa		13.52	□□□□□ -0.24
PTPN20-204	ENST00000374346	COPS6	Q7L5N1	327 aa		13.52	□□□□□ -0.24
PTPN20-204	ENST00000374346	TTC6	Q86TZ1	520 aa		13.52	□□□□□ -0.24
PTPN20-204	ENST00000374346	TTC5	Q8N0Z6	440 aa		13.52	□□□□□ -0.24
PTPN20-204	ENST00000374346	XAGE3	Q8WTP9	111 aa		13.52	□□□□□ -0.24
PTPN20-204	ENST00000374346	TNMD	Q9H2S6	317 aa		13.52	□□□□□ -0.24
PTPN20-204	ENST00000374346	DDX19A	Q9NUU7	478 aa	Known RBP	13.52	□□□□□ -0.24
PTPN20-204	ENST00000374346	TAT	P17735	454 aa	Predicted RBP	13.52	□□□□□ -0.25
PTPN20-204	ENST00000374346	FERMT3	Q86UX7	667 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms