RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 KDRP35968 1356 aa16.24■□□□□ 0.19
USP49-201ENST00000373006 USP31Q70CQ4 1352 aa16.24■□□□□ 0.19
USP49-201ENST00000373006 ITSN1Q15811 1721 aa16.24■□□□□ 0.19
USP49-201ENST00000373006 CREB3L3Q68CJ9 461 aa16.24■□□□□ 0.19
USP49-201ENST00000373006 IFIT2P09913 472 aaKnown RBP16.24■□□□□ 0.19
USP49-201ENST00000373006 BEND3Q5T5X7 828 aa16.24■□□□□ 0.19
USP49-201ENST00000373006 LARP1Q6PKG0 1096 aaKnown RBP16.24■□□□□ 0.19
USP49-201ENST00000373006 DNAJC25Q9H1X3 360 aa16.24■□□□□ 0.19
USP49-201ENST00000373006 ECHDC1Q9NTX5 307 aa16.24■□□□□ 0.19
USP49-201ENST00000373006 XRN1Q8IZH2 1706 aaKnown RBP16.23■□□□□ 0.19
USP49-201ENST00000373006 ZSCAN25Q6NSZ9 544 aa16.23■□□□□ 0.19
USP49-201ENST00000373006 DNAAF4Q8WXU2 420 aa16.23■□□□□ 0.19
USP49-201ENST00000373006 SIRT1Q96EB6 747 aa16.23■□□□□ 0.19
USP49-201ENST00000373006 AKAP12Q02952 1782 aa16.23■□□□□ 0.19
USP49-201ENST00000373006 SBNO1A3KN83 1393 aa16.23■□□□□ 0.19
USP49-201ENST00000373006 HTATSF1O43719 755 aaKnown RBP16.23■□□□□ 0.19
USP49-201ENST00000373006 NR1I2O75469 434 aa16.23■□□□□ 0.19
USP49-201ENST00000373006 CCDC171Q6TFL3 1326 aa16.23■□□□□ 0.19
USP49-201ENST00000373006 MAP3K5Q99683 1374 aa16.22■□□□□ 0.19
USP49-201ENST00000373006 TM6SF1Q9BZW5 370 aa16.22■□□□□ 0.19
USP49-201ENST00000373006 NRXN3Q9Y4C0 1643 aa16.22■□□□□ 0.19
USP49-201ENST00000373006 TTC41PQ6P2S7 1318 aa16.22■□□□□ 0.19
USP49-201ENST00000373006 RGPD1P0DJD0 1748 aa16.22■□□□□ 0.19
USP49-201ENST00000373006 KCNQ3O43525 872 aa16.22■□□□□ 0.19
USP49-201ENST00000373006 ZNF165P49910 485 aa16.22■□□□□ 0.19
USP49-201ENST00000373006 ZNF75DP51815 510 aa16.22■□□□□ 0.19
USP49-201ENST00000373006 TPD52L1Q16890 204 aaPredicted RBP16.22■□□□□ 0.19
USP49-201ENST00000373006 AACSQ86V21 672 aa16.22■□□□□ 0.19
USP49-201ENST00000373006 BICD2Q8TD16 824 aa16.22■□□□□ 0.19
USP49-201ENST00000373006 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.22■□□□□ 0.19
USP49-201ENST00000373006 NMIQ13287 307 aaPredicted RBP16.22■□□□□ 0.19
USP49-201ENST00000373006 HSP90AB4PQ58FF6 505 aa16.22■□□□□ 0.19
USP49-201ENST00000373006 CACTINQ8WUQ7 758 aaKnown RBP16.22■□□□□ 0.19
USP49-201ENST00000373006 DDX11Q96FC9 970 aa16.22■□□□□ 0.19
USP49-201ENST00000373006 CCDC144BQ3MJ40 725 aa16.21■□□□□ 0.19
USP49-201ENST00000373006 CCDC144CPQ8IYA2 1237 aa16.21■□□□□ 0.19
USP49-201ENST00000373006 RBM33Q96EV2 1170 aaKnown RBP16.21■□□□□ 0.19
USP49-201ENST00000373006 CLIP2Q9UDT6 1046 aa16.21■□□□□ 0.19
USP49-201ENST00000373006 CEBPZQ03701 1054 aaKnown RBP16.21■□□□□ 0.19
USP49-201ENST00000373006 ARID5BQ14865 1188 aa16.21■□□□□ 0.19
USP49-201ENST00000373006 CCDC8Q9H0W5 538 aaPredicted RBP16.21■□□□□ 0.19
USP49-201ENST00000373006 TMEM51Q9NW97 253 aa16.21■□□□□ 0.19
USP49-201ENST00000373006 SLC27A2O14975 620 aa16.2■□□□□ 0.18
USP49-201ENST00000373006 LEO1Q8WVC0 666 aaPredicted RBP16.2■□□□□ 0.18
USP49-201ENST00000373006 LGR6Q9HBX8 967 aa16.2■□□□□ 0.18
USP49-201ENST00000373006 AMOTL2Q9Y2J4 779 aa16.2■□□□□ 0.18
USP49-201ENST00000373006 C9orf78Q9NZ63 289 aaPredicted RBP16.2■□□□□ 0.18
USP49-201ENST00000373006 BLOC1S2Q6QNY1 142 aa16.2■□□□□ 0.18
USP49-201ENST00000373006 PLA2G4DQ86XP0 818 aa16.2■□□□□ 0.18
USP49-201ENST00000373006 SCAND2PQ9GZW5 306 aaPredicted RBP16.2■□□□□ 0.18
USP49-201ENST00000373006 PPP6R1Q9UPN7 881 aa16.2■□□□□ 0.18
USP49-201ENST00000373006 SMTNL1A8MU46 457 aa16.19■□□□□ 0.18
USP49-201ENST00000373006 KIF20AO95235 890 aa16.19■□□□□ 0.18
USP49-201ENST00000373006 CCDC112Q8NEF3 446 aa16.19■□□□□ 0.18
USP49-201ENST00000373006 MAP4K1Q92918 833 aa16.19■□□□□ 0.18
USP49-201ENST00000373006 ZBTB9Q96C00 473 aa16.19■□□□□ 0.18
USP49-201ENST00000373006 EVI5LQ96CN4 794 aa16.19■□□□□ 0.18
USP49-201ENST00000373006 PGBD1Q96JS3 809 aa16.19■□□□□ 0.18
USP49-201ENST00000373006 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.19■□□□□ 0.18
USP49-201ENST00000373006 V9GYY5 206 aaPredicted RBP16.19■□□□□ 0.18
USP49-201ENST00000373006 A0A087WWV3 80 aa16.19■□□□□ 0.18
USP49-201ENST00000373006 NPHP1O15259 732 aa16.19■□□□□ 0.18
USP49-201ENST00000373006 PDCP20941 246 aa16.19■□□□□ 0.18
USP49-201ENST00000373006 BOLA2Q9H3K6 86 aa16.19■□□□□ 0.18
USP49-201ENST00000373006 ELP1O95163 1332 aa16.19■□□□□ 0.18
USP49-201ENST00000373006 SPATA31D1Q6ZQQ2 1576 aa16.19■□□□□ 0.18
USP49-201ENST00000373006 A0A0D9SFI3 127 aa16.18■□□□□ 0.18
USP49-201ENST00000373006 JAK2O60674 1132 aa16.18■□□□□ 0.18
USP49-201ENST00000373006 HOXC9P31274 260 aa16.18■□□□□ 0.18
USP49-201ENST00000373006 KCNB2Q92953 911 aa16.18■□□□□ 0.18
USP49-201ENST00000373006 CLSTN2Q9H4D0 955 aa16.18■□□□□ 0.18
USP49-201ENST00000373006 TTC21AQ8NDW8 1320 aa16.18■□□□□ 0.18
USP49-201ENST00000373006 TECPR2O15040 1411 aa16.18■□□□□ 0.18
USP49-201ENST00000373006 CWF19L2Q2TBE0 894 aaKnown RBP16.18■□□□□ 0.18
USP49-201ENST00000373006 NPHP3Q7Z494 1330 aa16.18■□□□□ 0.18
USP49-201ENST00000373006 GPATCH3Q96I76 525 aa16.18■□□□□ 0.18
USP49-201ENST00000373006 USP42Q9H9J4 1324 aaKnown RBP16.18■□□□□ 0.18
USP49-201ENST00000373006 CTNNA3Q9UI47 895 aa16.18■□□□□ 0.18
USP49-201ENST00000373006 FAM208AQ9UK61 1670 aaKnown RBP16.18■□□□□ 0.18
USP49-201ENST00000373006 USP27XA6NNY8 438 aa16.18■□□□□ 0.18
USP49-201ENST00000373006 PSMA5P28066 241 aa16.18■□□□□ 0.18
USP49-201ENST00000373006 TLR7Q9NYK1 1049 aaKnown RBP16.18■□□□□ 0.18
USP49-201ENST00000373006 OGFRQ9NZT2 677 aa16.18■□□□□ 0.18
USP49-201ENST00000373006 FOSBP53539 338 aa16.17■□□□□ 0.18
USP49-201ENST00000373006 EIF4A1P60842 406 aaKnown RBP16.17■□□□□ 0.18
USP49-201ENST00000373006 TOB2Q14106 344 aaPredicted RBP16.17■□□□□ 0.18
USP49-201ENST00000373006 ABTB2Q8N961 1025 aa16.17■□□□□ 0.18
USP49-201ENST00000373006 FEZ1Q99689 392 aa16.17■□□□□ 0.18
USP49-201ENST00000373006 SIL1Q9H173 461 aa16.17■□□□□ 0.18
USP49-201ENST00000373006 DDX19AQ9NUU7 478 aaKnown RBP16.17■□□□□ 0.18
USP49-201ENST00000373006 EAF2Q96CJ1 260 aaPredicted RBP16.17■□□□□ 0.18
USP49-201ENST00000373006 TDRD7Q8NHU6 1098 aaKnown RBP16.16■□□□□ 0.18
USP49-201ENST00000373006 FSD1Q9BTV5 496 aa16.16■□□□□ 0.18
USP49-201ENST00000373006 PXDNLA1KZ92 1463 aa16.16■□□□□ 0.18
USP49-201ENST00000373006 FBXW7Q969H0 707 aa16.16■□□□□ 0.18
USP49-201ENST00000373006 EDC3Q96F86 508 aaKnown RBP16.16■□□□□ 0.18
USP49-201ENST00000373006 MAP3K2Q9Y2U5 619 aa16.16■□□□□ 0.18
USP49-201ENST00000373006 CEP135Q66GS9 1140 aa16.16■□□□□ 0.18
USP49-201ENST00000373006 TRMT1Q9NXH9 659 aaKnown RBP16.16■□□□□ 0.18
USP49-201ENST00000373006 DIP2BQ9P265 1576 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms