RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 FAM200AQ8TCP9 573 aa19.51■□□□□ 0.71
SDC4-201ENST00000372733 MAP3K2Q9Y2U5 619 aa19.51■□□□□ 0.71
SDC4-201ENST00000372733 MRVI1Q9Y6F6 885 aa19.51■□□□□ 0.71
SDC4-201ENST00000372733 TAF6LQ9Y6J9 622 aa19.51■□□□□ 0.71
SDC4-201ENST00000372733 PTGS1P23219 599 aa19.5■□□□□ 0.71
SDC4-201ENST00000372733 TYRO3Q06418 890 aa19.5■□□□□ 0.71
SDC4-201ENST00000372733 PROSER3Q2NL68 480 aa19.5■□□□□ 0.71
SDC4-201ENST00000372733 CWF19L2Q2TBE0 894 aaKnown RBP19.5■□□□□ 0.71
SDC4-201ENST00000372733 SLC27A2O14975 620 aa19.5■□□□□ 0.71
SDC4-201ENST00000372733 NBPF6Q5VWK0 638 aa19.5■□□□□ 0.71
SDC4-201ENST00000372733 PLPPR3Q6T4P5 718 aa19.5■□□□□ 0.71
SDC4-201ENST00000372733 CKAP2LQ8IYA6 745 aa19.5■□□□□ 0.71
SDC4-201ENST00000372733 NBPF4Q96M43 638 aa19.5■□□□□ 0.71
SDC4-201ENST00000372733 A0A0D9SFI3 127 aa19.49■□□□□ 0.71
SDC4-201ENST00000372733 RIOK3O14730 519 aaKnown RBP19.49■□□□□ 0.71
SDC4-201ENST00000372733 TEFQ10587 303 aa19.49■□□□□ 0.71
SDC4-201ENST00000372733 TLR7Q9NYK1 1049 aaKnown RBP19.49■□□□□ 0.71
SDC4-201ENST00000372733 BTBD11A6QL63 1104 aa19.48■□□□□ 0.71
SDC4-201ENST00000372733 MAP4K1Q92918 833 aa19.48■□□□□ 0.71
SDC4-201ENST00000372733 CCDC8Q9H0W5 538 aaPredicted RBP19.48■□□□□ 0.71
SDC4-201ENST00000372733 GOLGA6L6A8MZA4 724 aa19.48■□□□□ 0.71
SDC4-201ENST00000372733 MPRIPQ6WCQ1 1025 aa19.48■□□□□ 0.71
SDC4-201ENST00000372733 ERC1Q8IUD2 1116 aa19.48■□□□□ 0.71
SDC4-201ENST00000372733 KLHL34Q8N239 644 aa19.48■□□□□ 0.71
SDC4-201ENST00000372733 DACT1Q9NYF0 836 aa19.48■□□□□ 0.71
SDC4-201ENST00000372733 TPM3P06753 285 aa19.47■□□□□ 0.71
SDC4-201ENST00000372733 TFIP11Q9UBB9 837 aaKnown RBP19.47■□□□□ 0.71
SDC4-201ENST00000372733 CHD2O14647 1828 aaKnown RBP19.47■□□□□ 0.71
SDC4-201ENST00000372733 ZNF530Q6P9A1 599 aaPredicted RBP19.47■□□□□ 0.71
SDC4-201ENST00000372733 EAF2Q96CJ1 260 aaPredicted RBP19.47■□□□□ 0.71
SDC4-201ENST00000372733 TBX22Q9Y458 520 aa19.47■□□□□ 0.71
SDC4-201ENST00000372733 ELP1O95163 1332 aa19.47■□□□□ 0.71
SDC4-201ENST00000372733 SASH1O94885 1247 aa19.46■□□□□ 0.71
SDC4-201ENST00000372733 ANO6Q4KMQ2 910 aa19.46■□□□□ 0.71
SDC4-201ENST00000372733 TNMDQ9H2S6 317 aa19.46■□□□□ 0.71
SDC4-201ENST00000372733 DBF4Q9UBU7 674 aaPredicted RBP19.46■□□□□ 0.71
SDC4-201ENST00000372733 CHAF1AQ13111 956 aaPredicted RBP19.46■□□□□ 0.71
SDC4-201ENST00000372733 STK3Q13188 491 aa19.46■□□□□ 0.71
SDC4-201ENST00000372733 PPP4R3BQ5MIZ7 849 aa19.46■□□□□ 0.71
SDC4-201ENST00000372733 LARP1Q6PKG0 1096 aaKnown RBP19.46■□□□□ 0.71
SDC4-201ENST00000372733 BLOC1S2Q6QNY1 142 aa19.46■□□□□ 0.71
SDC4-201ENST00000372733 CBX8Q9HC52 389 aa19.46■□□□□ 0.71
SDC4-201ENST00000372733 NPHP4O75161 1426 aaPredicted RBP19.46■□□□□ 0.71
SDC4-201ENST00000372733 LTN1O94822 1766 aa19.45■□□□□ 0.7
SDC4-201ENST00000372733 ALDH1L1O75891 902 aa19.45■□□□□ 0.7
SDC4-201ENST00000372733 SUCLG2Q96I99 432 aa19.45■□□□□ 0.7
SDC4-201ENST00000372733 ANKARQ7Z5J8 1434 aa19.45■□□□□ 0.7
SDC4-201ENST00000372733 PRAMEF22A3QJZ6 481 aa19.45■□□□□ 0.7
SDC4-201ENST00000372733 PDCP20941 246 aa19.45■□□□□ 0.7
SDC4-201ENST00000372733 PSMA5P28066 241 aa19.45■□□□□ 0.7
SDC4-201ENST00000372733 CBX1P83916 185 aa19.45■□□□□ 0.7
SDC4-201ENST00000372733 LRMPQ12912 555 aa19.45■□□□□ 0.7
SDC4-201ENST00000372733 FSD1Q9BTV5 496 aa19.45■□□□□ 0.7
SDC4-201ENST00000372733 BOLA2Q9H3K6 86 aa19.45■□□□□ 0.7
SDC4-201ENST00000372733 USP54Q70EL1 1684 aa19.44■□□□□ 0.7
SDC4-201ENST00000372733 TOB2Q14106 344 aaPredicted RBP19.44■□□□□ 0.7
SDC4-201ENST00000372733 ATP2B3Q16720 1220 aa19.44■□□□□ 0.7
SDC4-201ENST00000372733 LRRC59Q96AG4 307 aaKnown RBP19.44■□□□□ 0.7
SDC4-201ENST00000372733 SPATA32Q96LK8 384 aa19.44■□□□□ 0.7
SDC4-201ENST00000372733 SIL1Q9H173 461 aa19.44■□□□□ 0.7
SDC4-201ENST00000372733 RPS6KB1P23443 525 aa19.44■□□□□ 0.7
SDC4-201ENST00000372733 CCDC186Q7Z3E2 898 aa19.44■□□□□ 0.7
SDC4-201ENST00000372733 IP6K1Q92551 441 aa19.44■□□□□ 0.7
SDC4-201ENST00000372733 KAZALD1Q96I82 304 aa19.44■□□□□ 0.7
SDC4-201ENST00000372733 BICC1Q9H694 974 aaKnown RBP19.44■□□□□ 0.7
SDC4-201ENST00000372733 GOLGA6L4A6NEF3 574 aa19.43■□□□□ 0.7
SDC4-201ENST00000372733 KSR2Q6VAB6 950 aa19.43■□□□□ 0.7
SDC4-201ENST00000372733 ZNF589Q86UQ0 364 aaPredicted RBP19.43■□□□□ 0.7
SDC4-201ENST00000372733 LEO1Q8WVC0 666 aaPredicted RBP19.43■□□□□ 0.7
SDC4-201ENST00000372733 HIP1O00291 1037 aa19.43■□□□□ 0.7
SDC4-201ENST00000372733 NRBP1Q9UHY1 535 aa19.43■□□□□ 0.7
SDC4-201ENST00000372733 SETD1BQ9UPS6 1966 aaKnown RBP19.43■□□□□ 0.7
SDC4-201ENST00000372733 PXDNQ92626 1479 aa19.43■□□□□ 0.7
SDC4-201ENST00000372733 MED23Q9ULK4 1368 aa19.43■□□□□ 0.7
SDC4-201ENST00000372733 KCNA6P17658 529 aa19.42■□□□□ 0.7
SDC4-201ENST00000372733 CHMP4AQ9BY43 222 aa19.42■□□□□ 0.7
SDC4-201ENST00000372733 G3BP1Q13283 466 aaKnown RBP eCLIP19.42■□□□□ 0.7
SDC4-201ENST00000372733 DRC7Q8IY82 874 aa19.42■□□□□ 0.7
SDC4-201ENST00000372733 PDCL2Q8N4E4 241 aa19.42■□□□□ 0.7
SDC4-201ENST00000372733 SCAND2PQ9GZW5 306 aaPredicted RBP19.42■□□□□ 0.7
SDC4-201ENST00000372733 NPHP3Q7Z494 1330 aa19.42■□□□□ 0.7
SDC4-201ENST00000372733 GRM8O00222 908 aa19.41■□□□□ 0.7
SDC4-201ENST00000372733 JAK2O60674 1132 aa19.41■□□□□ 0.7
SDC4-201ENST00000372733 KLHDC4Q8TBB5 520 aa19.41■□□□□ 0.7
SDC4-201ENST00000372733 EDC3Q96F86 508 aaKnown RBP19.41■□□□□ 0.7
SDC4-201ENST00000372733 CLSTN2Q9H4D0 955 aa19.41■□□□□ 0.7
SDC4-201ENST00000372733 SNRKQ9NRH2 765 aa19.41■□□□□ 0.7
SDC4-201ENST00000372733 NR1I2O75469 434 aa19.41■□□□□ 0.7
SDC4-201ENST00000372733 ZSCAN20P17040 1043 aaPredicted RBP19.41■□□□□ 0.7
SDC4-201ENST00000372733 ANKRD1Q15327 319 aa19.41■□□□□ 0.7
SDC4-201ENST00000372733 AKAP4Q5JQC9 854 aa19.41■□□□□ 0.7
SDC4-201ENST00000372733 RNF20Q5VTR2 975 aa19.41■□□□□ 0.7
SDC4-201ENST00000372733 DDX19AQ9NUU7 478 aaKnown RBP19.41■□□□□ 0.7
SDC4-201ENST00000372733 ARHGAP23Q9P227 1491 aa19.41■□□□□ 0.7
SDC4-201ENST00000372733 GIGYF1O75420 1035 aaPredicted RBP19.4■□□□□ 0.7
SDC4-201ENST00000372733 BICD2Q8TD16 824 aa19.4■□□□□ 0.7
SDC4-201ENST00000372733 TRIM5Q9C035 493 aa19.4■□□□□ 0.7
SDC4-201ENST00000372733 ZHX1Q9UKY1 873 aaPredicted RBP19.4■□□□□ 0.7
SDC4-201ENST00000372733 LMO7Q8WWI1 1683 aa19.4■□□□□ 0.7
SDC4-201ENST00000372733 SLIT1O75093 1534 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 138.6 ms