RNA–Protein interactions for RNA: ENST00000371429.3

NDC1-201, Transcript of NDC1 transmembrane nucleoporin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDC1, Length 5,134 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDC1-201ENST00000371429 ZNF804AQ7Z570 1209 aa17.16■□□□□ 0.34
NDC1-201ENST00000371429 NCOA7Q8NI08 942 aa17.16■□□□□ 0.34
NDC1-201ENST00000371429 CCDC12Q8WUD4 166 aaPredicted RBP17.16■□□□□ 0.34
NDC1-201ENST00000371429 SKAP1Q86WV1 359 aa17.16■□□□□ 0.34
NDC1-201ENST00000371429 JDP2Q8WYK2 163 aa17.16■□□□□ 0.34
NDC1-201ENST00000371429 BMP2KLQ5H9B9 411 aa17.15■□□□□ 0.34
NDC1-201ENST00000371429 USP16Q9Y5T5 823 aa17.15■□□□□ 0.34
NDC1-201ENST00000371429 IARSP41252 1262 aaKnown RBP17.15■□□□□ 0.34
NDC1-201ENST00000371429 MICU3Q86XE3 530 aa17.15■□□□□ 0.34
NDC1-201ENST00000371429 ATP7AQ04656 1500 aa17.15■□□□□ 0.34
NDC1-201ENST00000371429 CBFA2T2O43439 604 aa17.15■□□□□ 0.34
NDC1-201ENST00000371429 PPP1R12BO60237 982 aaPredicted RBP17.15■□□□□ 0.34
NDC1-201ENST00000371429 NAA16Q6N069 864 aaPredicted RBP17.15■□□□□ 0.34
NDC1-201ENST00000371429 MRPL50Q8N5N7 158 aaKnown RBP17.15■□□□□ 0.34
NDC1-201ENST00000371429 CCNL1Q9UK58 526 aaPredicted RBP17.15■□□□□ 0.34
NDC1-201ENST00000371429 CLEC11AQ9Y240 323 aa17.15■□□□□ 0.34
NDC1-201ENST00000371429 SCAND2PQ9GZW5 306 aaPredicted RBP17.15■□□□□ 0.34
NDC1-201ENST00000371429 CEP170Q5SW79 1584 aa17.14■□□□□ 0.34
NDC1-201ENST00000371429 FBXO3Q9UK99 471 aa17.14■□□□□ 0.33
NDC1-201ENST00000371429 ZFYVE9O95405 1425 aa17.14■□□□□ 0.33
NDC1-201ENST00000371429 ACBD3Q9H3P7 528 aa17.14■□□□□ 0.33
NDC1-201ENST00000371429 MYO6Q9UM54 1294 aa17.14■□□□□ 0.33
NDC1-201ENST00000371429 TNNT3P45378 269 aaPredicted RBP17.14■□□□□ 0.33
NDC1-201ENST00000371429 NEK1Q96PY6 1258 aa17.14■□□□□ 0.33
NDC1-201ENST00000371429 SEPT11Q9NVA2 429 aaKnown RBP17.14■□□□□ 0.33
NDC1-201ENST00000371429 ATP8B2P98198 1209 aa17.14■□□□□ 0.33
NDC1-201ENST00000371429 CWF19L2Q2TBE0 894 aaKnown RBP17.14■□□□□ 0.33
NDC1-201ENST00000371429 CCDC144CPQ8IYA2 1237 aa17.14■□□□□ 0.33
NDC1-201ENST00000371429 STK32BQ9NY57 414 aa17.13■□□□□ 0.33
NDC1-201ENST00000371429 HMG20BQ9P0W2 317 aa17.13■□□□□ 0.33
NDC1-201ENST00000371429 KRT24Q2M2I5 525 aa17.13■□□□□ 0.33
NDC1-201ENST00000371429 TTC22Q5TAA0 569 aa17.13■□□□□ 0.33
NDC1-201ENST00000371429 TBC1D9Q6ZT07 1266 aa17.13■□□□□ 0.33
NDC1-201ENST00000371429 ANKRD44Q8N8A2 993 aa17.13■□□□□ 0.33
NDC1-201ENST00000371429 PLEKHH1Q9ULM0 1364 aa17.13■□□□□ 0.33
NDC1-201ENST00000371429 FAM98CQ17RN3 349 aaKnown RBP17.13■□□□□ 0.33
NDC1-201ENST00000371429 LARP6Q9BRS8 491 aaKnown RBP17.13■□□□□ 0.33
NDC1-201ENST00000371429 EIF2AK4Q9P2K8 1649 aaKnown RBP17.12■□□□□ 0.33
NDC1-201ENST00000371429 SLC9C2Q5TAH2 1124 aa17.12■□□□□ 0.33
NDC1-201ENST00000371429 TXLNBQ8N3L3 684 aa17.12■□□□□ 0.33
NDC1-201ENST00000371429 EIF5P55010 431 aaKnown RBP17.12■□□□□ 0.33
NDC1-201ENST00000371429 HELBQ8NG08 1087 aaPredicted RBP17.12■□□□□ 0.33
NDC1-201ENST00000371429 SLC4A4Q9Y6R1 1079 aa17.12■□□□□ 0.33
NDC1-201ENST00000371429 HSP90B2PQ58FF3 399 aa17.12■□□□□ 0.33
NDC1-201ENST00000371429 BAG4O95429 457 aaKnown RBP17.12■□□□□ 0.33
NDC1-201ENST00000371429 SMTNL1A8MU46 457 aa17.11■□□□□ 0.33
NDC1-201ENST00000371429 MAP3K11Q16584 847 aa17.11■□□□□ 0.33
NDC1-201ENST00000371429 UBA5Q9GZZ9 404 aa17.11■□□□□ 0.33
NDC1-201ENST00000371429 PA2G4Q9UQ80 394 aaKnown RBP17.11■□□□□ 0.33
NDC1-201ENST00000371429 TSPY3P0CV98 308 aa17.11■□□□□ 0.33
NDC1-201ENST00000371429 TSPY8P0CW00 308 aa17.11■□□□□ 0.33
NDC1-201ENST00000371429 METAP2P50579 478 aaKnown RBP eCLIP17.11■□□□□ 0.33
NDC1-201ENST00000371429 TSPYL6Q8N831 410 aa17.11■□□□□ 0.33
NDC1-201ENST00000371429 DDX21Q9NR30 783 aaKnown RBP eCLIP17.11■□□□□ 0.33
NDC1-201ENST00000371429 TMEM2Q9UHN6 1383 aa17.11■□□□□ 0.33
NDC1-201ENST00000371429 PICALMQ13492 652 aa17.11■□□□□ 0.33
NDC1-201ENST00000371429 DDX17Q92841 729 aaKnown RBP17.11■□□□□ 0.33
NDC1-201ENST00000371429 EYA3Q99504 573 aa17.11■□□□□ 0.33
NDC1-201ENST00000371429 PARD3Q8TEW0 1356 aa17.11■□□□□ 0.33
NDC1-201ENST00000371429 MCM5P33992 734 aa17.11■□□□□ 0.33
NDC1-201ENST00000371429 ORC3Q9UBD5 711 aaPredicted RBP17.11■□□□□ 0.33
NDC1-201ENST00000371429 VAMP4O75379 141 aa17.1■□□□□ 0.33
NDC1-201ENST00000371429 ARHGEF10O15013 1369 aa17.1■□□□□ 0.33
NDC1-201ENST00000371429 TRIM21P19474 475 aaKnown RBP17.1■□□□□ 0.33
NDC1-201ENST00000371429 MCM4P33991 863 aa17.1■□□□□ 0.33
NDC1-201ENST00000371429 ZNF790Q6PG37 636 aa17.1■□□□□ 0.33
NDC1-201ENST00000371429 ESR2Q92731 530 aa17.1■□□□□ 0.33
NDC1-201ENST00000371429 VEZTQ9HBM0 779 aa17.1■□□□□ 0.33
NDC1-201ENST00000371429 NEO1Q92859 1461 aa17.1■□□□□ 0.33
NDC1-201ENST00000371429 SBNO1A3KN83 1393 aa17.1■□□□□ 0.33
NDC1-201ENST00000371429 HDAC1Q13547 482 aaPredicted RBP17.1■□□□□ 0.33
NDC1-201ENST00000371429 RAB11FIP4Q86YS3 637 aa17.1■□□□□ 0.33
NDC1-201ENST00000371429 CNBD1Q8NA66 436 aa17.1■□□□□ 0.33
NDC1-201ENST00000371429 WTAPQ15007 396 aa17.09■□□□□ 0.33
NDC1-201ENST00000371429 TRMT1LQ7Z2T5 733 aaKnown RBP17.09■□□□□ 0.33
NDC1-201ENST00000371429 KRT23Q9C075 422 aa17.09■□□□□ 0.33
NDC1-201ENST00000371429 ANKRD2Q9GZV1 360 aa17.09■□□□□ 0.33
NDC1-201ENST00000371429 RBM26Q5T8P6 1007 aaKnown RBP17.09■□□□□ 0.33
NDC1-201ENST00000371429 USP21Q9UK80 565 aa17.09■□□□□ 0.33
NDC1-201ENST00000371429 DESP17661 470 aa17.09■□□□□ 0.33
NDC1-201ENST00000371429 RIMBP2O15034 1052 aa17.09■□□□□ 0.33
NDC1-201ENST00000371429 IGHDP01880 384 aa17.09■□□□□ 0.33
NDC1-201ENST00000371429 PDE1AP54750 535 aa17.09■□□□□ 0.33
NDC1-201ENST00000371429 GRM1Q13255 1194 aa17.09■□□□□ 0.33
NDC1-201ENST00000371429 CAMK4Q16566 473 aa17.09■□□□□ 0.33
NDC1-201ENST00000371429 PPP4R3BQ5MIZ7 849 aa17.08■□□□□ 0.33
NDC1-201ENST00000371429 RSPH6AQ9H0K4 717 aa17.08■□□□□ 0.33
NDC1-201ENST00000371429 NF2P35240 595 aa17.08■□□□□ 0.32
NDC1-201ENST00000371429 PRIM1P49642 420 aaKnown RBP17.08■□□□□ 0.32
NDC1-201ENST00000371429 KLHL10Q6JEL2 608 aa17.08■□□□□ 0.32
NDC1-201ENST00000371429 SLC26A6Q9BXS9 759 aa17.08■□□□□ 0.32
NDC1-201ENST00000371429 CCDC178Q5BJE1 867 aa17.08■□□□□ 0.32
NDC1-201ENST00000371429 TCP11L1Q9NUJ3 509 aa17.08■□□□□ 0.32
NDC1-201ENST00000371429 EDC4Q6P2E9 1401 aaKnown RBP17.08■□□□□ 0.32
NDC1-201ENST00000371429 FILIP1Q7Z7B0 1213 aa17.08■□□□□ 0.32
NDC1-201ENST00000371429 LTKP29376 864 aa17.07■□□□□ 0.32
NDC1-201ENST00000371429 MAPKBP1O60336 1514 aa17.07■□□□□ 0.32
NDC1-201ENST00000371429 NUCB1Q02818 461 aa17.07■□□□□ 0.32
NDC1-201ENST00000371429 CFAP100Q494V2 611 aa17.07■□□□□ 0.32
NDC1-201ENST00000371429 TEX35Q5T0J7 233 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms