RNA–Protein interactions for RNA: ENST00000366744.5

MRPL55-216, Transcript of mitochondrial ribosomal protein L55, human

APPRIS P1 TSL 3 BASIC

Gene MRPL55, Length 726 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MRPL55-216	ENST00000366744	PRPF40B	Q6NWY9	871 aa	Known RBP	11.98	□□□□□ -0.49
MRPL55-216	ENST00000366744	RIC3	Q7Z5B4	369 aa		11.98	□□□□□ -0.49
MRPL55-216	ENST00000366744	NUTM1	Q86Y26	1132 aa		11.98	□□□□□ -0.49
MRPL55-216	ENST00000366744	TMX4	Q9H1E5	349 aa	Predicted RBP	11.98	□□□□□ -0.49
MRPL55-216	ENST00000366744	GPBP1L1	Q9HC44	474 aa	Predicted RBP	11.98	□□□□□ -0.49
MRPL55-216	ENST00000366744	ERFE	Q4G0M1	354 aa		11.97	□□□□□ -0.49
MRPL55-216	ENST00000366744	ANKRD13D	Q6ZTN6	518 aa		11.97	□□□□□ -0.49
MRPL55-216	ENST00000366744	LRP10	Q7Z4F1	713 aa		11.97	□□□□□ -0.49
MRPL55-216	ENST00000366744	ZNF34	Q8IZ26	560 aa		11.97	□□□□□ -0.49
MRPL55-216	ENST00000366744	C8orf58	Q8NAV2	365 aa		11.97	□□□□□ -0.49
MRPL55-216	ENST00000366744	RNF181	Q9P0P0	153 aa		11.97	□□□□□ -0.49
MRPL55-216	ENST00000366744	ZNF219	Q9P2Y4	722 aa	Predicted RBP	11.97	□□□□□ -0.49
MRPL55-216	ENST00000366744	SH3TC1	Q8TE82	1336 aa		11.96	□□□□□ -0.49
MRPL55-216	ENST00000366744	ZC3H4	Q9UPT8	1303 aa	Known RBP	11.96	□□□□□ -0.49
MRPL55-216	ENST00000366744	SPEF2	Q9C093	1822 aa		11.96	□□□□□ -0.49
MRPL55-216	ENST00000366744	NTSR2	O95665	410 aa		11.96	□□□□□ -0.49
MRPL55-216	ENST00000366744	HSP90B1	P14625	803 aa	Known RBP	11.96	□□□□□ -0.49
MRPL55-216	ENST00000366744	ALDH1B1	P30837	517 aa		11.96	□□□□□ -0.49
MRPL55-216	ENST00000366744	TCIRG1	Q13488	830 aa		11.96	□□□□□ -0.49
MRPL55-216	ENST00000366744	SUSD4	Q5VX71	490 aa		11.96	□□□□□ -0.49
MRPL55-216	ENST00000366744	ZNF526	Q8TF50	670 aa	Predicted RBP	11.96	□□□□□ -0.49
MRPL55-216	ENST00000366744	TRMT112	Q9UI30	125 aa	Known RBP	11.96	□□□□□ -0.49
MRPL55-216	ENST00000366744	C21orf2	O43822	256 aa		11.95	□□□□□ -0.5
MRPL55-216	ENST00000366744	RASSF7	Q02833	373 aa		11.95	□□□□□ -0.5
MRPL55-216	ENST00000366744	NEXN	Q0ZGT2	675 aa		11.95	□□□□□ -0.5
MRPL55-216	ENST00000366744	CCDC93	Q567U6	631 aa		11.95	□□□□□ -0.5
MRPL55-216	ENST00000366744	C9orf131	Q5VYM1	1079 aa		11.95	□□□□□ -0.5
MRPL55-216	ENST00000366744	DIEXF	Q68CQ4	756 aa	Known RBP	11.95	□□□□□ -0.5
MRPL55-216	ENST00000366744	NLRP10	Q86W26	655 aa		11.95	□□□□□ -0.5
MRPL55-216	ENST00000366744	RBM17	Q96I25	401 aa	Known RBP	11.95	□□□□□ -0.5
MRPL55-216	ENST00000366744	NLRP3	Q96P20	1036 aa		11.95	□□□□□ -0.5
MRPL55-216	ENST00000366744	TAOK3	Q9H2K8	898 aa		11.95	□□□□□ -0.5
MRPL55-216	ENST00000366744	KDM2B	Q8NHM5	1336 aa		11.94	□□□□□ -0.5
MRPL55-216	ENST00000366744	TAF1	P21675	1872 aa		11.94	□□□□□ -0.5
MRPL55-216	ENST00000366744	LMNB1	P20700	586 aa		11.94	□□□□□ -0.5
MRPL55-216	ENST00000366744	CRY2	Q49AN0	593 aa		11.94	□□□□□ -0.5
MRPL55-216	ENST00000366744	LRRC37A	A6NMS7	1700 aa		11.94	□□□□□ -0.5
MRPL55-216	ENST00000366744	KLRG2	A4D1S0	409 aa	Predicted RBP	11.93	□□□□□ -0.5
MRPL55-216	ENST00000366744	TSPYL6	Q8N831	410 aa		11.93	□□□□□ -0.5
MRPL55-216	ENST00000366744	PHAX	Q9H814	394 aa	Known RBP	11.93	□□□□□ -0.5
MRPL55-216	ENST00000366744	LTBP3	Q9NS15	1303 aa		11.92	□□□□□ -0.5
MRPL55-216	ENST00000366744	ATP5J2-PTCD1	G3V325	749 aa		11.92	□□□□□ -0.5
MRPL55-216	ENST00000366744	PPEF1	O14829	653 aa	Predicted RBP	11.92	□□□□□ -0.5
MRPL55-216	ENST00000366744	EXOSC9	Q06265	439 aa	Known RBP	11.92	□□□□□ -0.5
MRPL55-216	ENST00000366744	FKBP5	Q13451	457 aa	Predicted RBP	11.92	□□□□□ -0.5
MRPL55-216	ENST00000366744	RTKN2	Q8IZC4	609 aa		11.92	□□□□□ -0.5
MRPL55-216	ENST00000366744	MYD88	Q99836	296 aa		11.92	□□□□□ -0.5
MRPL55-216	ENST00000366744		E9PSI1	815 aa		11.91	□□□□□ -0.5
MRPL55-216	ENST00000366744	SLC4A2	P04920	1241 aa		11.91	□□□□□ -0.5
MRPL55-216	ENST00000366744	GRIPAP1	Q4V328	841 aa		11.91	□□□□□ -0.5
MRPL55-216	ENST00000366744	CC2D2B	Q6DHV5	1058 aa		11.91	□□□□□ -0.5
MRPL55-216	ENST00000366744	DDX46	Q7L014	1031 aa	Known RBP	11.91	□□□□□ -0.5
MRPL55-216	ENST00000366744	CWC25	Q9NXE8	425 aa	Predicted RBP	11.91	□□□□□ -0.5
MRPL55-216	ENST00000366744	MAP3K2	Q9Y2U5	619 aa		11.91	□□□□□ -0.5
MRPL55-216	ENST00000366744	NFKBIE	O00221	500 aa		11.9	□□□□□ -0.5
MRPL55-216	ENST00000366744	TCERG1	O14776	1098 aa	Known RBP	11.9	□□□□□ -0.5
MRPL55-216	ENST00000366744	HCLS1	P14317	486 aa	Predicted RBP	11.9	□□□□□ -0.5
MRPL55-216	ENST00000366744	FLII	Q13045	1269 aa		11.9	□□□□□ -0.5
MRPL55-216	ENST00000366744	KSR2	Q6VAB6	950 aa		11.9	□□□□□ -0.5
MRPL55-216	ENST00000366744	C16orf71	Q8IYS4	520 aa	Predicted RBP	11.9	□□□□□ -0.5
MRPL55-216	ENST00000366744	CCDC191	Q8NCU4	936 aa		11.9	□□□□□ -0.5
MRPL55-216	ENST00000366744	CRAMP1	Q96RY5	1269 aa		11.9	□□□□□ -0.5
MRPL55-216	ENST00000366744	ISCA1	Q9BUE6	129 aa		11.9	□□□□□ -0.5
MRPL55-216	ENST00000366744	SCN4A	P35499	1836 aa		11.9	□□□□□ -0.5
MRPL55-216	ENST00000366744	PI4KAP2	A4QPH2	592 aa		11.89	□□□□□ -0.51
MRPL55-216	ENST00000366744	HOXA10	P31260	410 aa	Predicted RBP	11.89	□□□□□ -0.51
MRPL55-216	ENST00000366744	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.89	□□□□□ -0.51
MRPL55-216	ENST00000366744	TRIM28	Q13263	835 aa	Known RBP	11.89	□□□□□ -0.51
MRPL55-216	ENST00000366744	RTL5	Q5HYW3	569 aa	Predicted RBP	11.89	□□□□□ -0.51
MRPL55-216	ENST00000366744	SLC10A5	Q5PT55	438 aa		11.89	□□□□□ -0.51
MRPL55-216	ENST00000366744	PI4KAP1	Q8N8J0	262 aa		11.89	□□□□□ -0.51
MRPL55-216	ENST00000366744	FAM89A	Q96GI7	184 aa		11.89	□□□□□ -0.51
MRPL55-216	ENST00000366744	METTL22	Q9BUU2	404 aa	Predicted RBP	11.89	□□□□□ -0.51
MRPL55-216	ENST00000366744	WDR90	Q96KV7	1748 aa		11.89	□□□□□ -0.51
MRPL55-216	ENST00000366744	ABCC4	O15439	1325 aa		11.88	□□□□□ -0.51
MRPL55-216	ENST00000366744	ZNF521	Q96K83	1311 aa		11.88	□□□□□ -0.51
MRPL55-216	ENST00000366744	IRS4	O14654	1257 aa	Predicted RBP	11.88	□□□□□ -0.51
MRPL55-216	ENST00000366744	DPY19L2	Q6NUT2	758 aa		11.88	□□□□□ -0.51
MRPL55-216	ENST00000366744	TMC4	Q7Z404	712 aa		11.88	□□□□□ -0.51
MRPL55-216	ENST00000366744	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	11.88	□□□□□ -0.51
MRPL55-216	ENST00000366744	ZNF428	Q96B54	188 aa		11.88	□□□□□ -0.51
MRPL55-216	ENST00000366744	VAMP4	O75379	141 aa		11.87	□□□□□ -0.51
MRPL55-216	ENST00000366744	PCCA	P05165	728 aa	Predicted RBP	11.87	□□□□□ -0.51
MRPL55-216	ENST00000366744	GRAP	Q13588	217 aa		11.87	□□□□□ -0.51
MRPL55-216	ENST00000366744	C3orf67	Q6ZVT6	689 aa		11.87	□□□□□ -0.51
MRPL55-216	ENST00000366744	GRAPL	Q8TC17	118 aa	Predicted RBP	11.87	□□□□□ -0.51
MRPL55-216	ENST00000366744	BBOX1	O75936	387 aa		11.86	□□□□□ -0.51
MRPL55-216	ENST00000366744	CCDC152	Q4G0S7	254 aa		11.86	□□□□□ -0.51
MRPL55-216	ENST00000366744	SUPT20H	Q8NEM7	779 aa		11.86	□□□□□ -0.51
MRPL55-216	ENST00000366744	C7orf43	Q8WVR3	580 aa		11.86	□□□□□ -0.51
MRPL55-216	ENST00000366744	DNAAF4	Q8WXU2	420 aa		11.86	□□□□□ -0.51
MRPL55-216	ENST00000366744	JDP2	Q8WYK2	163 aa		11.86	□□□□□ -0.51
MRPL55-216	ENST00000366744	PSMD1	Q99460	953 aa		11.86	□□□□□ -0.51
MRPL55-216	ENST00000366744	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.86	□□□□□ -0.51
MRPL55-216	ENST00000366744	CDHR2	Q9BYE9	1310 aa		11.86	□□□□□ -0.51
MRPL55-216	ENST00000366744	PDE8A	O60658	829 aa		11.85	□□□□□ -0.51
MRPL55-216	ENST00000366744	IARS	P41252	1262 aa	Known RBP	11.85	□□□□□ -0.51
MRPL55-216	ENST00000366744	C1QTNF8	P60827	252 aa		11.85	□□□□□ -0.51
MRPL55-216	ENST00000366744	DPP8	Q6V1X1	898 aa	Predicted RBP	11.85	□□□□□ -0.51
MRPL55-216	ENST00000366744	ZNF277	Q9NRM2	450 aa	Predicted RBP	11.85	□□□□□ -0.51

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