RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 RGL2O15211 777 aa24.88■■□□□ 1.57
CLN3-205ENST00000359984 ATP8B2P98198 1209 aa24.88■■□□□ 1.57
CLN3-205ENST00000359984 USPL1Q5W0Q7 1092 aa24.88■■□□□ 1.57
CLN3-205ENST00000359984 AKT1S1Q96B36 256 aa24.88■■□□□ 1.57
CLN3-205ENST00000359984 BCL2L12Q9HB09 334 aa24.88■■□□□ 1.57
CLN3-205ENST00000359984 ZPR1O75312 459 aa24.87■■□□□ 1.57
CLN3-205ENST00000359984 RFC4P35249 363 aa24.87■■□□□ 1.57
CLN3-205ENST00000359984 ZNF827Q17R98 1081 aa24.87■■□□□ 1.57
CLN3-205ENST00000359984 UBR3Q6ZT12 1888 aa24.87■■□□□ 1.57
CLN3-205ENST00000359984 ANKRD36CQ5JPF3 1778 aa24.87■■□□□ 1.57
CLN3-205ENST00000359984 UBN2Q6ZU65 1347 aa24.87■■□□□ 1.57
CLN3-205ENST00000359984 SSFA2P28290 1259 aa24.87■■□□□ 1.57
CLN3-205ENST00000359984 BAG6P46379 1132 aa24.87■■□□□ 1.57
CLN3-205ENST00000359984 PNMA6EA0A0J9YXQ4 647 aa24.85■■□□□ 1.57
CLN3-205ENST00000359984 RTL5Q5HYW3 569 aaPredicted RBP24.85■■□□□ 1.57
CLN3-205ENST00000359984 USP42Q9H9J4 1324 aaKnown RBP24.85■■□□□ 1.57
CLN3-205ENST00000359984 PCCAP05165 728 aaPredicted RBP24.85■■□□□ 1.57
CLN3-205ENST00000359984 DEFB132Q7Z7B7 95 aa24.85■■□□□ 1.57
CLN3-205ENST00000359984 BICC1Q9H694 974 aaKnown RBP24.85■■□□□ 1.57
CLN3-205ENST00000359984 NIP7Q9Y221 180 aaKnown RBP eCLIP24.85■■□□□ 1.57
CLN3-205ENST00000359984 SCN7AQ01118 1682 aa24.85■■□□□ 1.57
CLN3-205ENST00000359984 EPHA10Q5JZY3 1008 aa24.84■■□□□ 1.57
CLN3-205ENST00000359984 ZBTB38Q8NAP3 1195 aaPredicted RBP24.84■■□□□ 1.57
CLN3-205ENST00000359984 TFCP2L1Q9NZI6 479 aa24.84■■□□□ 1.57
CLN3-205ENST00000359984 C4AP0C0L4 1744 aa24.83■■□□□ 1.57
CLN3-205ENST00000359984 HMMRO75330 724 aa24.83■■□□□ 1.57
CLN3-205ENST00000359984 PPP1R42Q7Z4L9 355 aa24.83■■□□□ 1.57
CLN3-205ENST00000359984 MTX1Q13505 466 aa24.83■■□□□ 1.56
CLN3-205ENST00000359984 PARP10Q53GL7 1025 aa24.83■■□□□ 1.56
CLN3-205ENST00000359984 SUSD4Q5VX71 490 aa24.83■■□□□ 1.56
CLN3-205ENST00000359984 SMC5Q8IY18 1101 aa24.83■■□□□ 1.56
CLN3-205ENST00000359984 FAM89AQ96GI7 184 aa24.83■■□□□ 1.56
CLN3-205ENST00000359984 CCDC125Q86Z20 511 aa24.82■■□□□ 1.56
CLN3-205ENST00000359984 TRMT112Q9UI30 125 aaKnown RBP24.82■■□□□ 1.56
CLN3-205ENST00000359984 TBC1D9BQ66K14 1250 aa24.81■■□□□ 1.56
CLN3-205ENST00000359984 SSH3Q8TE77 659 aa24.81■■□□□ 1.56
CLN3-205ENST00000359984 SRGAP3O43295 1099 aa24.81■■□□□ 1.56
CLN3-205ENST00000359984 POLA2Q14181 598 aa24.81■■□□□ 1.56
CLN3-205ENST00000359984 SYNE4Q8N205 404 aa24.81■■□□□ 1.56
CLN3-205ENST00000359984 DCTPP1Q9H773 170 aa24.8■■□□□ 1.56
CLN3-205ENST00000359984 FOXO4P98177 505 aa24.79■■□□□ 1.56
CLN3-205ENST00000359984 GCC1Q96CN9 775 aa24.79■■□□□ 1.56
CLN3-205ENST00000359984 UTP14AQ9BVJ6 771 aaKnown RBP24.79■■□□□ 1.56
CLN3-205ENST00000359984 CDHR2Q9BYE9 1310 aa24.79■■□□□ 1.56
CLN3-205ENST00000359984 FAM177BA6PVY3 158 aa24.79■■□□□ 1.56
CLN3-205ENST00000359984 RABL6Q3YEC7 729 aaPredicted RBP24.79■■□□□ 1.56
CLN3-205ENST00000359984 BICDL1Q6ZP65 573 aa24.79■■□□□ 1.56
CLN3-205ENST00000359984 ANO8Q9HCE9 1232 aaPredicted RBP24.78■■□□□ 1.56
CLN3-205ENST00000359984 NTSR2O95665 410 aa24.77■■□□□ 1.56
CLN3-205ENST00000359984 GYS1P13807 737 aa24.77■■□□□ 1.56
CLN3-205ENST00000359984 COL23A1Q86Y22 540 aaPredicted RBP24.77■■□□□ 1.56
CLN3-205ENST00000359984 SETDB2Q96T68 719 aa24.77■■□□□ 1.56
CLN3-205ENST00000359984 PLA2G12BQ9BX93 195 aa24.77■■□□□ 1.56
CLN3-205ENST00000359984 LMBR1LQ6UX01 489 aa24.76■■□□□ 1.55
CLN3-205ENST00000359984 SKAP1Q86WV1 359 aa24.76■■□□□ 1.55
CLN3-205ENST00000359984 FLAD1Q8NFF5 587 aa24.76■■□□□ 1.55
CLN3-205ENST00000359984 PDZRN3Q9UPQ7 1066 aa24.76■■□□□ 1.55
CLN3-205ENST00000359984 SH3TC1Q8TE82 1336 aa24.75■■□□□ 1.55
CLN3-205ENST00000359984 IRS4O14654 1257 aaPredicted RBP24.75■■□□□ 1.55
CLN3-205ENST00000359984 TUBGCP6Q96RT7 1819 aa24.75■■□□□ 1.55
CLN3-205ENST00000359984 SLC15A2Q16348 729 aa24.75■■□□□ 1.55
CLN3-205ENST00000359984 STK32BQ9NY57 414 aa24.75■■□□□ 1.55
CLN3-205ENST00000359984 PNPLA7Q6ZV29 1317 aa24.74■■□□□ 1.55
CLN3-205ENST00000359984 NFIXQ14938 502 aa24.73■■□□□ 1.55
CLN3-205ENST00000359984 MSH5O43196 834 aa24.72■■□□□ 1.55
CLN3-205ENST00000359984 NUCB1Q02818 461 aa24.72■■□□□ 1.55
CLN3-205ENST00000359984 NUTM1Q86Y26 1132 aa24.72■■□□□ 1.55
CLN3-205ENST00000359984 EXOC6BQ9Y2D4 811 aa24.72■■□□□ 1.55
CLN3-205ENST00000359984 ANKRD45Q5TZF3 282 aa24.72■■□□□ 1.55
CLN3-205ENST00000359984 HCLS1P14317 486 aaPredicted RBP24.71■■□□□ 1.55
CLN3-205ENST00000359984 PDE8AO60658 829 aa24.7■■□□□ 1.55
CLN3-205ENST00000359984 SURF6O75683 361 aaKnown RBP24.7■■□□□ 1.55
CLN3-205ENST00000359984 CSF1RP07333 972 aa24.7■■□□□ 1.55
CLN3-205ENST00000359984 PA2G4Q9UQ80 394 aaKnown RBP24.7■■□□□ 1.55
CLN3-205ENST00000359984 RFX5P48382 616 aaPredicted RBP24.7■■□□□ 1.54
CLN3-205ENST00000359984 ERFEQ4G0M1 354 aa24.7■■□□□ 1.54
CLN3-205ENST00000359984 NYXQ9GZU5 481 aa24.7■■□□□ 1.54
CLN3-205ENST00000359984 NOP58Q9Y2X3 529 aaKnown RBP24.7■■□□□ 1.54
CLN3-205ENST00000359984 CHMP3Q9Y3E7 222 aa24.7■■□□□ 1.54
CLN3-205ENST00000359984 COL24A1Q17RW2 1714 aa24.69■■□□□ 1.54
CLN3-205ENST00000359984 TM4SF1P30408 202 aa24.69■■□□□ 1.54
CLN3-205ENST00000359984 CTSWP56202 376 aa24.69■■□□□ 1.54
CLN3-205ENST00000359984 CHD1LQ86WJ1 897 aa24.69■■□□□ 1.54
CLN3-205ENST00000359984 NBPF5PQ86XG9 351 aaPredicted RBP24.69■■□□□ 1.54
CLN3-205ENST00000359984 UPF1Q92900 1129 aaKnown RBP eCLIP24.69■■□□□ 1.54
CLN3-205ENST00000359984 TSHZ2Q9NRE2 1034 aa24.69■■□□□ 1.54
CLN3-205ENST00000359984 CARMIL3Q8ND23 1372 aa24.69■■□□□ 1.54
CLN3-205ENST00000359984 APBB1O00213 710 aa24.68■■□□□ 1.54
CLN3-205ENST00000359984 TTLL11Q8NHH1 800 aa24.68■■□□□ 1.54
CLN3-205ENST00000359984 KLHDC4Q8TBB5 520 aa24.68■■□□□ 1.54
CLN3-205ENST00000359984 LNPKQ9C0E8 428 aa24.68■■□□□ 1.54
CLN3-205ENST00000359984 TPTE2Q6XPS3 522 aa24.67■■□□□ 1.54
CLN3-205ENST00000359984 HSP90B1P14625 803 aaKnown RBP24.66■■□□□ 1.54
CLN3-205ENST00000359984 GTF2E1P29083 439 aaPredicted RBP24.66■■□□□ 1.54
CLN3-205ENST00000359984 PTPN12Q05209 780 aaKnown RBP24.66■■□□□ 1.54
CLN3-205ENST00000359984 CCDC85AQ96PX6 553 aaPredicted RBP24.66■■□□□ 1.54
CLN3-205ENST00000359984 COPRSQ9NQ92 184 aa24.66■■□□□ 1.54
CLN3-205ENST00000359984 FAM161AQ3B820 660 aa24.66■■□□□ 1.54
CLN3-205ENST00000359984 SLC10A5Q5PT55 438 aa24.66■■□□□ 1.54
CLN3-205ENST00000359984 NLGN1Q8N2Q7 840 aa24.66■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms