RNA–Protein interactions for RNA: ENST00000349124.2

PTP4A3-202, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

TSL 1 (best) BASIC

Gene PTP4A3, Length 2,710 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-202ENST00000349124 LINS1Q8NG48 757 aa21.66■■□□□ 1.06
PTP4A3-202ENST00000349124 TTC12Q9H892 705 aaPredicted RBP21.66■■□□□ 1.06
PTP4A3-202ENST00000349124 ADCY5O95622 1261 aa21.66■■□□□ 1.06
PTP4A3-202ENST00000349124 GPATCH3Q96I76 525 aa21.66■■□□□ 1.06
PTP4A3-202ENST00000349124 FAM13BQ9NYF5 915 aa21.66■■□□□ 1.06
PTP4A3-202ENST00000349124 MED1Q15648 1581 aaPredicted RBP21.65■■□□□ 1.06
PTP4A3-202ENST00000349124 MAP4K1Q92918 833 aa21.65■■□□□ 1.06
PTP4A3-202ENST00000349124 SLC27A2O14975 620 aa21.64■■□□□ 1.06
PTP4A3-202ENST00000349124 AP5Z1O43299 807 aa21.64■■□□□ 1.06
PTP4A3-202ENST00000349124 RIC3Q7Z5B4 369 aa21.64■■□□□ 1.06
PTP4A3-202ENST00000349124 ZNF589Q86UQ0 364 aaPredicted RBP21.64■■□□□ 1.06
PTP4A3-202ENST00000349124 KCNB2Q92953 911 aa21.64■■□□□ 1.06
PTP4A3-202ENST00000349124 RGPD2P0DJD1 1756 aa21.64■■□□□ 1.06
PTP4A3-202ENST00000349124 LTN1O94822 1766 aa21.64■■□□□ 1.05
PTP4A3-202ENST00000349124 UQCRHLA0A096LP55 91 aa21.64■■□□□ 1.05
PTP4A3-202ENST00000349124 UQCRHP07919 91 aa21.64■■□□□ 1.05
PTP4A3-202ENST00000349124 ZKSCAN1P17029 563 aaPredicted RBP21.64■■□□□ 1.05
PTP4A3-202ENST00000349124 ZC3H6P61129 1189 aaKnown RBP21.64■■□□□ 1.05
PTP4A3-202ENST00000349124 ERC1Q8IUD2 1116 aa21.64■■□□□ 1.05
PTP4A3-202ENST00000349124 MCM5P33992 734 aa21.64■■□□□ 1.05
PTP4A3-202ENST00000349124 FSD1Q9BTV5 496 aa21.64■■□□□ 1.05
PTP4A3-202ENST00000349124 CHMP4AQ9BY43 222 aa21.64■■□□□ 1.05
PTP4A3-202ENST00000349124 STK3Q13188 491 aa21.63■■□□□ 1.05
PTP4A3-202ENST00000349124 TM6SF1Q9BZW5 370 aa21.63■■□□□ 1.05
PTP4A3-202ENST00000349124 DDX21Q9NR30 783 aaKnown RBP eCLIP21.63■■□□□ 1.05
PTP4A3-202ENST00000349124 HEG1Q9ULI3 1381 aa21.63■■□□□ 1.05
PTP4A3-202ENST00000349124 LARP1BQ659C4 914 aaKnown RBP21.63■■□□□ 1.05
PTP4A3-202ENST00000349124 CDC37L1Q7L3B6 337 aa21.63■■□□□ 1.05
PTP4A3-202ENST00000349124 ANKLE2Q86XL3 938 aa21.63■■□□□ 1.05
PTP4A3-202ENST00000349124 N4BP2Q86UW6 1770 aaPredicted RBP21.61■■□□□ 1.05
PTP4A3-202ENST00000349124 ZSCAN31Q96LW9 406 aaPredicted RBP21.61■■□□□ 1.05
PTP4A3-202ENST00000349124 FUCA2Q9BTY2 467 aa21.61■■□□□ 1.05
PTP4A3-202ENST00000349124 COPS6Q7L5N1 327 aa21.61■■□□□ 1.05
PTP4A3-202ENST00000349124 NFATC2IPQ8NCF5 419 aa21.61■■□□□ 1.05
PTP4A3-202ENST00000349124 XAGE3Q8WTP9 111 aa21.61■■□□□ 1.05
PTP4A3-202ENST00000349124 SH2B1Q9NRF2 756 aaPredicted RBP21.61■■□□□ 1.05
PTP4A3-202ENST00000349124 TFIP11Q9UBB9 837 aaKnown RBP21.61■■□□□ 1.05
PTP4A3-202ENST00000349124 ATP6V1DQ9Y5K8 247 aa21.61■■□□□ 1.05
PTP4A3-202ENST00000349124 CAMK4Q16566 473 aa21.6■■□□□ 1.05
PTP4A3-202ENST00000349124 TTC6Q86TZ1 520 aa21.6■■□□□ 1.05
PTP4A3-202ENST00000349124 MYD88Q99836 296 aa21.6■■□□□ 1.05
PTP4A3-202ENST00000349124 CCDC9Q9Y3X0 531 aaKnown RBP21.6■■□□□ 1.05
PTP4A3-202ENST00000349124 VSIG10Q8N0Z9 540 aa21.6■■□□□ 1.05
PTP4A3-202ENST00000349124 FAM184AQ8NB25 1140 aa21.6■■□□□ 1.05
PTP4A3-202ENST00000349124 UVSSAQ2YD98 709 aa21.59■■□□□ 1.05
PTP4A3-202ENST00000349124 KDM4AO75164 1064 aa21.59■■□□□ 1.05
PTP4A3-202ENST00000349124 KDM3BQ7LBC6 1761 aa21.59■■□□□ 1.05
PTP4A3-202ENST00000349124 NEURL1BA8MQ27 555 aa21.58■■□□□ 1.05
PTP4A3-202ENST00000349124 DDX58O95786 925 aaKnown RBP21.58■■□□□ 1.05
PTP4A3-202ENST00000349124 KIAA2012Q0VF49 1180 aa21.58■■□□□ 1.05
PTP4A3-202ENST00000349124 CSPP1Q1MSJ5 1256 aa21.58■■□□□ 1.05
PTP4A3-202ENST00000349124 ZNF790Q6PG37 636 aa21.58■■□□□ 1.05
PTP4A3-202ENST00000349124 ARID3AQ99856 593 aa21.58■■□□□ 1.05
PTP4A3-202ENST00000349124 LIG1P18858 919 aa21.58■■□□□ 1.05
PTP4A3-202ENST00000349124 TERF1P54274 439 aa21.58■■□□□ 1.05
PTP4A3-202ENST00000349124 USP16Q9Y5T5 823 aa21.58■■□□□ 1.05
PTP4A3-202ENST00000349124 UTYO14607 1347 aa21.58■■□□□ 1.04
PTP4A3-202ENST00000349124 TOB2Q14106 344 aaPredicted RBP21.57■■□□□ 1.04
PTP4A3-202ENST00000349124 BLOC1S2Q6QNY1 142 aa21.57■■□□□ 1.04
PTP4A3-202ENST00000349124 TSC1Q92574 1164 aa21.57■■□□□ 1.04
PTP4A3-202ENST00000349124 GCKRQ14397 625 aa21.57■■□□□ 1.04
PTP4A3-202ENST00000349124 LARP1Q6PKG0 1096 aaKnown RBP21.57■■□□□ 1.04
PTP4A3-202ENST00000349124 CCDC129Q6ZRS4 1044 aa21.57■■□□□ 1.04
PTP4A3-202ENST00000349124 SEC62Q99442 399 aaKnown RBP21.57■■□□□ 1.04
PTP4A3-202ENST00000349124 DNTTIP2Q5QJE6 756 aaKnown RBP21.57■■□□□ 1.04
PTP4A3-202ENST00000349124 PDCL3Q9H2J4 239 aa21.57■■□□□ 1.04
PTP4A3-202ENST00000349124 LETM1O95202 739 aaPredicted RBP21.56■■□□□ 1.04
PTP4A3-202ENST00000349124 ZNF496Q96IT1 587 aaPredicted RBP21.56■■□□□ 1.04
PTP4A3-202ENST00000349124 ATP5J2-PTCD1G3V325 749 aa21.56■■□□□ 1.04
PTP4A3-202ENST00000349124 PTCD1O75127 700 aaKnown RBP21.56■■□□□ 1.04
PTP4A3-202ENST00000349124 SLFNL1Q499Z3 407 aa21.56■■□□□ 1.04
PTP4A3-202ENST00000349124 DDX17Q92841 729 aaKnown RBP21.56■■□□□ 1.04
PTP4A3-202ENST00000349124 NLRP2Q9NX02 1062 aa21.56■■□□□ 1.04
PTP4A3-202ENST00000349124 SPC24Q8NBT2 197 aa21.55■■□□□ 1.04
PTP4A3-202ENST00000349124 DBNLQ9UJU6 430 aaKnown RBP21.55■■□□□ 1.04
PTP4A3-202ENST00000349124 RPS6KB1P23443 525 aa21.55■■□□□ 1.04
PTP4A3-202ENST00000349124 TFCP2Q12800 502 aa21.55■■□□□ 1.04
PTP4A3-202ENST00000349124 KRT28Q7Z3Y7 464 aa21.55■■□□□ 1.04
PTP4A3-202ENST00000349124 HDAC5Q9UQL6 1122 aa21.55■■□□□ 1.04
PTP4A3-202ENST00000349124 COL15A1P39059 1388 aa21.55■■□□□ 1.04
PTP4A3-202ENST00000349124 NPHP4O75161 1426 aaPredicted RBP21.54■■□□□ 1.04
PTP4A3-202ENST00000349124 JAK2O60674 1132 aa21.54■■□□□ 1.04
PTP4A3-202ENST00000349124 TAF5LO75529 589 aa21.54■■□□□ 1.04
PTP4A3-202ENST00000349124 CKAP2LQ8IYA6 745 aa21.54■■□□□ 1.04
PTP4A3-202ENST00000349124 DDX11Q96FC9 970 aa21.54■■□□□ 1.04
PTP4A3-202ENST00000349124 PSMA5P28066 241 aa21.54■■□□□ 1.04
PTP4A3-202ENST00000349124 NOLC1Q14978 699 aaKnown RBP eCLIP21.54■■□□□ 1.04
PTP4A3-202ENST00000349124 LRRC2Q9BYS8 371 aa21.54■■□□□ 1.04
PTP4A3-202ENST00000349124 CRYBG1Q9Y4K1 1723 aa21.53■■□□□ 1.04
PTP4A3-202ENST00000349124 USP54Q70EL1 1684 aa21.53■■□□□ 1.04
PTP4A3-202ENST00000349124 HIP1O00291 1037 aa21.53■■□□□ 1.04
PTP4A3-202ENST00000349124 NEXNQ0ZGT2 675 aa21.53■■□□□ 1.04
PTP4A3-202ENST00000349124 SASS6Q6UVJ0 657 aa21.53■■□□□ 1.04
PTP4A3-202ENST00000349124 UBE3BQ7Z3V4 1068 aa21.52■■□□□ 1.04
PTP4A3-202ENST00000349124 DNAJC2Q99543 621 aaKnown RBP21.52■■□□□ 1.04
PTP4A3-202ENST00000349124 METTL22Q9BUU2 404 aaPredicted RBP21.52■■□□□ 1.04
PTP4A3-202ENST00000349124 SLC52A2Q9HAB3 445 aa21.52■■□□□ 1.04
PTP4A3-202ENST00000349124 SNRKQ9NRH2 765 aa21.52■■□□□ 1.04
PTP4A3-202ENST00000349124 FAM177BA6PVY3 158 aa21.51■■□□□ 1.03
PTP4A3-202ENST00000349124 KRT85P78386 507 aa21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms