RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 ZNF330Q9Y3S2 320 aaPredicted RBP15.68■□□□□ 0.1
CLK3-201ENST00000345005 ZNF831Q5JPB2 1677 aa15.68■□□□□ 0.1
CLK3-201ENST00000345005 MFAP1P55081 439 aaKnown RBP15.68■□□□□ 0.1
CLK3-201ENST00000345005 CASP7P55210 303 aa15.68■□□□□ 0.1
CLK3-201ENST00000345005 G3BP1Q13283 466 aaKnown RBP eCLIP15.68■□□□□ 0.1
CLK3-201ENST00000345005 ZNF772Q68DY9 489 aaPredicted RBP15.68■□□□□ 0.1
CLK3-201ENST00000345005 ISCA1Q9BUE6 129 aa15.68■□□□□ 0.1
CLK3-201ENST00000345005 IL1RAPL2Q9NP60 686 aa15.68■□□□□ 0.1
CLK3-201ENST00000345005 MAP3K15Q6ZN16 1313 aa15.67■□□□□ 0.1
CLK3-201ENST00000345005 SDSP20132 328 aa15.67■□□□□ 0.1
CLK3-201ENST00000345005 IL6STP40189 918 aaPredicted RBP15.67■□□□□ 0.1
CLK3-201ENST00000345005 RABL6Q3YEC7 729 aaPredicted RBP15.67■□□□□ 0.1
CLK3-201ENST00000345005 LOC102724428A0A0B4J2F2 783 aa15.66■□□□□ 0.1
CLK3-201ENST00000345005 ATP6V1AP38606 617 aa15.66■□□□□ 0.1
CLK3-201ENST00000345005 SIK1P57059 783 aa15.66■□□□□ 0.1
CLK3-201ENST00000345005 HSP90AB3PQ58FF7 597 aa15.66■□□□□ 0.1
CLK3-201ENST00000345005 EPHA10Q5JZY3 1008 aa15.66■□□□□ 0.1
CLK3-201ENST00000345005 CASC1Q6TDU7 716 aa15.66■□□□□ 0.1
CLK3-201ENST00000345005 TBC1D2Q9BYX2 928 aa15.66■□□□□ 0.1
CLK3-201ENST00000345005 C22orf23Q9BZE7 217 aa15.66■□□□□ 0.1
CLK3-201ENST00000345005 RREB1Q92766 1687 aa15.66■□□□□ 0.1
CLK3-201ENST00000345005 GOLGA6L3A6NEY3 463 aa15.66■□□□□ 0.1
CLK3-201ENST00000345005 GIGYF2Q6Y7W6 1299 aaKnown RBP15.66■□□□□ 0.1
CLK3-201ENST00000345005 CLASRPQ8N2M8 674 aaKnown RBP15.66■□□□□ 0.1
CLK3-201ENST00000345005 JARID2Q92833 1246 aaPredicted RBP15.66■□□□□ 0.1
CLK3-201ENST00000345005 ARXQ96QS3 562 aa15.66■□□□□ 0.1
CLK3-201ENST00000345005 PA2G4Q9UQ80 394 aaKnown RBP15.66■□□□□ 0.1
CLK3-201ENST00000345005 ZBTB1Q9Y2K1 713 aa15.66■□□□□ 0.1
CLK3-201ENST00000345005 PALLDQ8WX93 1383 aa15.65■□□□□ 0.1
CLK3-201ENST00000345005 GJD4Q96KN9 370 aaPredicted RBP15.65■□□□□ 0.1
CLK3-201ENST00000345005 MYH14Q7Z406 1995 aaKnown RBP15.65■□□□□ 0.1
CLK3-201ENST00000345005 DDX11L8A8MPP1 907 aa15.64■□□□□ 0.09
CLK3-201ENST00000345005 ERVV-1B6SEH8 477 aa15.64■□□□□ 0.09
CLK3-201ENST00000345005 KCNQ2O43526 872 aa15.64■□□□□ 0.09
CLK3-201ENST00000345005 NUTM1Q86Y26 1132 aa15.64■□□□□ 0.09
CLK3-201ENST00000345005 SLKQ9H2G2 1235 aaPredicted RBP15.64■□□□□ 0.09
CLK3-201ENST00000345005 COPRSQ9NQ92 184 aa15.64■□□□□ 0.09
CLK3-201ENST00000345005 CCDC87Q9NVE4 849 aa15.64■□□□□ 0.09
CLK3-201ENST00000345005 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.64■□□□□ 0.09
CLK3-201ENST00000345005 COL5A3P25940 1745 aaPredicted RBP15.64■□□□□ 0.09
CLK3-201ENST00000345005 MCM4P33991 863 aa15.64■□□□□ 0.09
CLK3-201ENST00000345005 FOXO4P98177 505 aa15.63■□□□□ 0.09
CLK3-201ENST00000345005 INTS5Q6P9B9 1019 aaKnown RBP15.63■□□□□ 0.09
CLK3-201ENST00000345005 TRPC5Q9UL62 973 aaPredicted RBP15.63■□□□□ 0.09
CLK3-201ENST00000345005 NHSQ6T4R5 1651 aa15.62■□□□□ 0.09
CLK3-201ENST00000345005 BTAF1O14981 1849 aa15.62■□□□□ 0.09
CLK3-201ENST00000345005 SBF2Q86WG5 1849 aa15.62■□□□□ 0.09
CLK3-201ENST00000345005 TTC41PQ6P2S7 1318 aa15.62■□□□□ 0.09
CLK3-201ENST00000345005 USP42Q9H9J4 1324 aaKnown RBP15.62■□□□□ 0.09
CLK3-201ENST00000345005 MYH3P11055 1940 aa15.62■□□□□ 0.09
CLK3-201ENST00000345005 PCCAP05165 728 aaPredicted RBP15.62■□□□□ 0.09
CLK3-201ENST00000345005 CRKLP46109 303 aaKnown RBP15.62■□□□□ 0.09
CLK3-201ENST00000345005 RFX5P48382 616 aaPredicted RBP15.62■□□□□ 0.09
CLK3-201ENST00000345005 EIF5P55010 431 aaKnown RBP15.62■□□□□ 0.09
CLK3-201ENST00000345005 LMBR1LQ6UX01 489 aa15.62■□□□□ 0.09
CLK3-201ENST00000345005 DZIP3Q86Y13 1208 aaKnown RBP15.62■□□□□ 0.09
CLK3-201ENST00000345005 PKNOX2Q96KN3 472 aa15.62■□□□□ 0.09
CLK3-201ENST00000345005 ATRNO75882 1429 aa15.62■□□□□ 0.09
CLK3-201ENST00000345005 FSD2A1L4K1 749 aa15.61■□□□□ 0.09
CLK3-201ENST00000345005 ONECUT3O60422 494 aaPredicted RBP15.61■□□□□ 0.09
CLK3-201ENST00000345005 SASH1O94885 1247 aa15.61■□□□□ 0.09
CLK3-201ENST00000345005 IFIT2P09913 472 aaKnown RBP15.61■□□□□ 0.09
CLK3-201ENST00000345005 RBM25P49756 843 aaKnown RBP15.61■□□□□ 0.09
CLK3-201ENST00000345005 PTPN12Q05209 780 aaKnown RBP15.61■□□□□ 0.09
CLK3-201ENST00000345005 HSCBQ8IWL3 235 aa15.61■□□□□ 0.09
CLK3-201ENST00000345005 GPATCH3Q96I76 525 aa15.61■□□□□ 0.09
CLK3-201ENST00000345005 CIZ1Q9ULV3 898 aaPredicted RBP15.61■□□□□ 0.09
CLK3-201ENST00000345005 ITPK1Q13572 414 aa15.61■□□□□ 0.09
CLK3-201ENST00000345005 HLFQ16534 295 aa15.61■□□□□ 0.09
CLK3-201ENST00000345005 TSHZ3Q63HK5 1081 aa15.61■□□□□ 0.09
CLK3-201ENST00000345005 SIL1Q9H173 461 aa15.61■□□□□ 0.09
CLK3-201ENST00000345005 QTRT2Q9H974 415 aaKnown RBP15.61■□□□□ 0.09
CLK3-201ENST00000345005 TRIM6-TRIM34B2RNG4 842 aa15.6■□□□□ 0.09
CLK3-201ENST00000345005 ERC2O15083 957 aa15.6■□□□□ 0.09
CLK3-201ENST00000345005 RXRBP28702 533 aa15.6■□□□□ 0.09
CLK3-201ENST00000345005 MRE11P49959 708 aa15.6■□□□□ 0.09
CLK3-201ENST00000345005 ZBTB38Q8NAP3 1195 aaPredicted RBP15.6■□□□□ 0.09
CLK3-201ENST00000345005 SNX21Q969T3 373 aa15.6■□□□□ 0.09
CLK3-201ENST00000345005 PI4K2BQ8TCG2 481 aa15.59■□□□□ 0.09
CLK3-201ENST00000345005 PLA2G12BQ9BX93 195 aa15.59■□□□□ 0.09
CLK3-201ENST00000345005 TBC1D2BQ9UPU7 963 aa15.59■□□□□ 0.09
CLK3-201ENST00000345005 GLRX3O76003 335 aaKnown RBP15.59■□□□□ 0.09
CLK3-201ENST00000345005 SKOR2Q2VWA4 1001 aaPredicted RBP15.59■□□□□ 0.09
CLK3-201ENST00000345005 AACSQ86V21 672 aa15.59■□□□□ 0.09
CLK3-201ENST00000345005 NLRP10Q86W26 655 aa15.59■□□□□ 0.09
CLK3-201ENST00000345005 KLHDC4Q8TBB5 520 aa15.59■□□□□ 0.09
CLK3-201ENST00000345005 RILPL2Q969X0 211 aa15.59■□□□□ 0.09
CLK3-201ENST00000345005 ECHDC1Q9NTX5 307 aa15.59■□□□□ 0.09
CLK3-201ENST00000345005 CHMP3Q9Y3E7 222 aa15.59■□□□□ 0.09
CLK3-201ENST00000345005 CDHR2Q9BYE9 1310 aa15.58■□□□□ 0.09
CLK3-201ENST00000345005 REC8O95072 547 aa15.57■□□□□ 0.08
CLK3-201ENST00000345005 GPTP24298 496 aa15.57■□□□□ 0.08
CLK3-201ENST00000345005 ZNF34Q8IZ26 560 aa15.57■□□□□ 0.08
CLK3-201ENST00000345005 EAF2Q96CJ1 260 aaPredicted RBP15.57■□□□□ 0.08
CLK3-201ENST00000345005 FAM89AQ96GI7 184 aa15.57■□□□□ 0.08
CLK3-201ENST00000345005 TRAK2O60296 914 aa15.56■□□□□ 0.08
CLK3-201ENST00000345005 LY75O60449 1722 aa15.56■□□□□ 0.08
CLK3-201ENST00000345005 RBM6P78332 1123 aaKnown RBP15.56■□□□□ 0.08
CLK3-201ENST00000345005 SEPT12Q8IYM1 358 aa15.56■□□□□ 0.08
CLK3-201ENST00000345005 CNTROBQ8N137 903 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms