RNA–Protein interactions for RNA: ENST00000343139.9

HLA-DQA1-201, Transcript of major histocompatibility complex, class II, DQ alpha 1, humanhuman

APPRIS P1 BASIC

Gene HLA-DQA1, Length 1,591 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1-201ENST00000343139 CCDC191Q8NCU4 936 aa16.73■□□□□ 0.27
HLA-DQA1-201ENST00000343139 MASTLQ96GX5 879 aa16.73■□□□□ 0.27
HLA-DQA1-201ENST00000343139 BCS1LQ9Y276 419 aa16.73■□□□□ 0.27
HLA-DQA1-201ENST00000343139 FAM177BA6PVY3 158 aa16.72■□□□□ 0.27
HLA-DQA1-201ENST00000343139 NPR1P16066 1061 aa16.72■□□□□ 0.27
HLA-DQA1-201ENST00000343139 G2E3Q7L622 706 aa16.72■□□□□ 0.27
HLA-DQA1-201ENST00000343139 NUTM1Q86Y26 1132 aa16.72■□□□□ 0.27
HLA-DQA1-201ENST00000343139 CCDC24Q8N4L8 307 aa16.72■□□□□ 0.27
HLA-DQA1-201ENST00000343139 CNKSR1Q969H4 720 aa16.72■□□□□ 0.27
HLA-DQA1-201ENST00000343139 SH3TC1Q8TE82 1336 aa16.72■□□□□ 0.27
HLA-DQA1-201ENST00000343139 ADCY9O60503 1353 aa16.72■□□□□ 0.27
HLA-DQA1-201ENST00000343139 ABCC12Q96J65 1359 aa16.72■□□□□ 0.27
HLA-DQA1-201ENST00000343139 ZBED9Q6R2W3 1325 aa16.72■□□□□ 0.27
HLA-DQA1-201ENST00000343139 TCERG1O14776 1098 aaKnown RBP16.72■□□□□ 0.27
HLA-DQA1-201ENST00000343139 ALDH1L2Q3SY69 923 aa16.72■□□□□ 0.27
HLA-DQA1-201ENST00000343139 TRMT112Q9UI30 125 aaKnown RBP16.72■□□□□ 0.27
HLA-DQA1-201ENST00000343139 MAP3K2Q9Y2U5 619 aa16.72■□□□□ 0.27
HLA-DQA1-201ENST00000343139 ANKRD31Q8N7Z5 1873 aa16.71■□□□□ 0.27
HLA-DQA1-201ENST00000343139 N4BP2Q86UW6 1770 aaPredicted RBP16.71■□□□□ 0.27
HLA-DQA1-201ENST00000343139 HOXA10P31260 410 aaPredicted RBP16.71■□□□□ 0.27
HLA-DQA1-201ENST00000343139 NEXNQ0ZGT2 675 aa16.71■□□□□ 0.27
HLA-DQA1-201ENST00000343139 BRCA1P38398 1863 aaKnown RBP16.71■□□□□ 0.27
HLA-DQA1-201ENST00000343139 ATP5J2-PTCD1G3V325 749 aa16.7■□□□□ 0.26
HLA-DQA1-201ENST00000343139 HSP90B1P14625 803 aaKnown RBP16.7■□□□□ 0.26
HLA-DQA1-201ENST00000343139 FKBP5Q13451 457 aaPredicted RBP16.7■□□□□ 0.26
HLA-DQA1-201ENST00000343139 NLRP3Q96P20 1036 aa16.7■□□□□ 0.26
HLA-DQA1-201ENST00000343139 MYD88Q99836 296 aa16.7■□□□□ 0.26
HLA-DQA1-201ENST00000343139 ANKRD36CQ5JPF3 1778 aa16.7■□□□□ 0.26
HLA-DQA1-201ENST00000343139 DLEC1Q9Y238 1755 aa16.7■□□□□ 0.26
HLA-DQA1-201ENST00000343139 ALDH1B1P30837 517 aa16.69■□□□□ 0.26
HLA-DQA1-201ENST00000343139 ZBTB38Q8NAP3 1195 aaPredicted RBP16.69■□□□□ 0.26
HLA-DQA1-201ENST00000343139 DNAAF4Q8WXU2 420 aa16.69■□□□□ 0.26
HLA-DQA1-201ENST00000343139 ZNF622Q969S3 477 aaKnown RBP eCLIP16.69■□□□□ 0.26
HLA-DQA1-201ENST00000343139 CWC25Q9NXE8 425 aaPredicted RBP16.69■□□□□ 0.26
HLA-DQA1-201ENST00000343139 ARFGEF2Q9Y6D5 1785 aa16.69■□□□□ 0.26
HLA-DQA1-201ENST00000343139 CACNA1FO60840 1977 aa16.69■□□□□ 0.26
HLA-DQA1-201ENST00000343139 BRPF1P55201 1214 aaPredicted RBP16.68■□□□□ 0.26
HLA-DQA1-201ENST00000343139 PCCAP05165 728 aaPredicted RBP16.68■□□□□ 0.26
HLA-DQA1-201ENST00000343139 IGKV5-2P06315 115 aa16.68■□□□□ 0.26
HLA-DQA1-201ENST00000343139 SOGA3Q5TF21 947 aa16.68■□□□□ 0.26
HLA-DQA1-201ENST00000343139 MRPL50Q8N5N7 158 aaKnown RBP16.68■□□□□ 0.26
HLA-DQA1-201ENST00000343139 LINS1Q8NG48 757 aa16.68■□□□□ 0.26
HLA-DQA1-201ENST00000343139 PTPRCP08575 1304 aa16.67■□□□□ 0.26
HLA-DQA1-201ENST00000343139 SSH1Q8WYL5 1049 aa16.67■□□□□ 0.26
HLA-DQA1-201ENST00000343139 CRAMP1Q96RY5 1269 aa16.67■□□□□ 0.26
HLA-DQA1-201ENST00000343139 WWC3Q9ULE0 1092 aa16.67■□□□□ 0.26
HLA-DQA1-201ENST00000343139 NEURL1BA8MQ27 555 aa16.66■□□□□ 0.26
HLA-DQA1-201ENST00000343139 PRPF40BQ6NWY9 871 aaKnown RBP16.66■□□□□ 0.26
HLA-DQA1-201ENST00000343139 RPGRQ92834 1020 aaKnown RBP16.66■□□□□ 0.26
HLA-DQA1-201ENST00000343139 FAM89AQ96GI7 184 aa16.66■□□□□ 0.26
HLA-DQA1-201ENST00000343139 COL11A2P13942 1736 aaPredicted RBP16.66■□□□□ 0.26
HLA-DQA1-201ENST00000343139 ARFGEF1Q9Y6D6 1849 aa16.66■□□□□ 0.26
HLA-DQA1-201ENST00000343139 CDHR2Q9BYE9 1310 aa16.65■□□□□ 0.26
HLA-DQA1-201ENST00000343139 SF3B3Q15393 1217 aaKnown RBP16.65■□□□□ 0.26
HLA-DQA1-201ENST00000343139 C7orf43Q8WVR3 580 aa16.65■□□□□ 0.26
HLA-DQA1-201ENST00000343139 RBM17Q96I25 401 aaKnown RBP16.65■□□□□ 0.26
HLA-DQA1-201ENST00000343139 HCLS1P14317 486 aaPredicted RBP16.64■□□□□ 0.25
HLA-DQA1-201ENST00000343139 SYNE4Q8N205 404 aa16.64■□□□□ 0.25
HLA-DQA1-201ENST00000343139 TNRC6CQ9HCJ0 1690 aaKnown RBP16.64■□□□□ 0.25
HLA-DQA1-201ENST00000343139 IRS4O14654 1257 aaPredicted RBP16.64■□□□□ 0.25
HLA-DQA1-201ENST00000343139 GCKRQ14397 625 aa16.64■□□□□ 0.25
HLA-DQA1-201ENST00000343139 GRIPAP1Q4V328 841 aa16.64■□□□□ 0.25
HLA-DQA1-201ENST00000343139 BEND3Q5T5X7 828 aa16.64■□□□□ 0.25
HLA-DQA1-201ENST00000343139 CC2D2BQ6DHV5 1058 aa16.64■□□□□ 0.25
HLA-DQA1-201ENST00000343139 ARHGAP27Q6ZUM4 889 aa16.64■□□□□ 0.25
HLA-DQA1-201ENST00000343139 C3orf67Q6ZVT6 689 aa16.64■□□□□ 0.25
HLA-DQA1-201ENST00000343139 LTBP3Q9NS15 1303 aa16.63■□□□□ 0.25
HLA-DQA1-201ENST00000343139 YY1P25490 414 aa16.63■□□□□ 0.25
HLA-DQA1-201ENST00000343139 H7C1W4 665 aa16.62■□□□□ 0.25
HLA-DQA1-201ENST00000343139 RARSP54136 660 aaKnown RBP16.62■□□□□ 0.25
HLA-DQA1-201ENST00000343139 CWF19L2Q2TBE0 894 aaKnown RBP16.62■□□□□ 0.25
HLA-DQA1-201ENST00000343139 SMC4Q9NTJ3 1288 aa16.62■□□□□ 0.25
HLA-DQA1-201ENST00000343139 F6X3S4 739 aa16.61■□□□□ 0.25
HLA-DQA1-201ENST00000343139 C21orf2O43822 256 aa16.61■□□□□ 0.25
HLA-DQA1-201ENST00000343139 PDE8AO60658 829 aa16.61■□□□□ 0.25
HLA-DQA1-201ENST00000343139 ALDH1L1O75891 902 aa16.61■□□□□ 0.25
HLA-DQA1-201ENST00000343139 BBOX1O75936 387 aa16.61■□□□□ 0.25
HLA-DQA1-201ENST00000343139 TMC4Q7Z404 712 aa16.61■□□□□ 0.25
HLA-DQA1-201ENST00000343139 CCDC93Q567U6 631 aa16.6■□□□□ 0.25
HLA-DQA1-201ENST00000343139 DDX46Q7L014 1031 aaKnown RBP16.6■□□□□ 0.25
HLA-DQA1-201ENST00000343139 RTKN2Q8IZC4 609 aa16.6■□□□□ 0.25
HLA-DQA1-201ENST00000343139 ARHGAP45Q92619 1136 aa16.6■□□□□ 0.25
HLA-DQA1-201ENST00000343139 PLA2G12BQ9BX93 195 aa16.6■□□□□ 0.25
HLA-DQA1-201ENST00000343139 NFKBIEO00221 500 aa16.6■□□□□ 0.25
HLA-DQA1-201ENST00000343139 SRCIN1Q9C0H9 1055 aa16.6■□□□□ 0.25
HLA-DQA1-201ENST00000343139 ABCC4O15439 1325 aa16.59■□□□□ 0.25
HLA-DQA1-201ENST00000343139 KIF16BQ96L93 1317 aa16.59■□□□□ 0.25
HLA-DQA1-201ENST00000343139 CASP7P55210 303 aa16.59■□□□□ 0.25
HLA-DQA1-201ENST00000343139 GRAPQ13588 217 aa16.59■□□□□ 0.25
HLA-DQA1-201ENST00000343139 CCDC152Q4G0S7 254 aa16.59■□□□□ 0.25
HLA-DQA1-201ENST00000343139 RTL5Q5HYW3 569 aaPredicted RBP16.59■□□□□ 0.25
HLA-DQA1-201ENST00000343139 GRAPLQ8TC17 118 aaPredicted RBP16.59■□□□□ 0.25
HLA-DQA1-201ENST00000343139 ZC3H4Q9UPT8 1303 aaKnown RBP16.58■□□□□ 0.25
HLA-DQA1-201ENST00000343139 CHD4Q14839 1912 aa16.58■□□□□ 0.25
HLA-DQA1-201ENST00000343139 SNED1Q8TER0 1413 aa16.58■□□□□ 0.24
HLA-DQA1-201ENST00000343139 PPEF1O14829 653 aaPredicted RBP16.58■□□□□ 0.24
HLA-DQA1-201ENST00000343139 LMNB1P20700 586 aa16.58■□□□□ 0.24
HLA-DQA1-201ENST00000343139 BCL2L13Q9BXK5 485 aa16.58■□□□□ 0.24
HLA-DQA1-201ENST00000343139 ATP6V0A2Q9Y487 856 aa16.58■□□□□ 0.24
HLA-DQA1-201ENST00000343139 RTL9Q8NET4 1388 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms