RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 PI4KAP2A4QPH2 592 aa26.62■■□□□ 1.85
TRIM28-202ENST00000341753 GOLGA6L6A8MZA4 724 aa26.62■■□□□ 1.85
TRIM28-202ENST00000341753 IGSF3O75054 1194 aa26.62■■□□□ 1.85
TRIM28-202ENST00000341753 GCP02774 474 aa26.62■■□□□ 1.85
TRIM28-202ENST00000341753 DRC7Q8IY82 874 aa26.62■■□□□ 1.85
TRIM28-202ENST00000341753 PI4KAP1Q8N8J0 262 aa26.62■■□□□ 1.85
TRIM28-202ENST00000341753 NUP62CLQ9H1M0 184 aa26.62■■□□□ 1.85
TRIM28-202ENST00000341753 KCNJ4P48050 445 aa26.62■■□□□ 1.85
TRIM28-202ENST00000341753 MAP3K11Q16584 847 aa26.62■■□□□ 1.85
TRIM28-202ENST00000341753 CCDC186Q7Z3E2 898 aa26.62■■□□□ 1.85
TRIM28-202ENST00000341753 FAM200AQ8TCP9 573 aa26.62■■□□□ 1.85
TRIM28-202ENST00000341753 ZSWIM6Q9HCJ5 1215 aa26.62■■□□□ 1.85
TRIM28-202ENST00000341753 NFAT5O94916 1531 aa26.62■■□□□ 1.85
TRIM28-202ENST00000341753 EIF4A1P60842 406 aaKnown RBP26.61■■□□□ 1.85
TRIM28-202ENST00000341753 PA2G4Q9UQ80 394 aaKnown RBP26.61■■□□□ 1.85
TRIM28-202ENST00000341753 C16orf45Q96MC5 204 aaPredicted RBP26.61■■□□□ 1.85
TRIM28-202ENST00000341753 ADGRL3Q9HAR2 1447 aa26.6■■□□□ 1.85
TRIM28-202ENST00000341753 GLRX3O76003 335 aaKnown RBP26.6■■□□□ 1.85
TRIM28-202ENST00000341753 AXIN2Q9Y2T1 843 aa26.6■■□□□ 1.85
TRIM28-202ENST00000341753 DACT1Q9NYF0 836 aa26.6■■□□□ 1.85
TRIM28-202ENST00000341753 ANO6Q4KMQ2 910 aa26.59■■□□□ 1.85
TRIM28-202ENST00000341753 PRAMEF22A3QJZ6 481 aa26.59■■□□□ 1.85
TRIM28-202ENST00000341753 KRT85P78386 507 aa26.59■■□□□ 1.85
TRIM28-202ENST00000341753 UTP14CQ5TAP6 766 aaKnown RBP26.59■■□□□ 1.85
TRIM28-202ENST00000341753 ZSCAN31Q96LW9 406 aaPredicted RBP26.59■■□□□ 1.85
TRIM28-202ENST00000341753 FAM227BQ96M60 508 aa26.59■■□□□ 1.85
TRIM28-202ENST00000341753 SH2B1Q9NRF2 756 aaPredicted RBP26.59■■□□□ 1.85
TRIM28-202ENST00000341753 TEFQ10587 303 aa26.59■■□□□ 1.85
TRIM28-202ENST00000341753 RUFY2Q8WXA3 655 aa26.59■■□□□ 1.85
TRIM28-202ENST00000341753 RBM8AQ9Y5S9 174 aaKnown RBP26.59■■□□□ 1.85
TRIM28-202ENST00000341753 CEMIPQ8WUJ3 1361 aa26.58■■□□□ 1.85
TRIM28-202ENST00000341753 DDX17Q92841 729 aaKnown RBP26.58■■□□□ 1.85
TRIM28-202ENST00000341753 CBX8Q9HC52 389 aa26.58■■□□□ 1.85
TRIM28-202ENST00000341753 BTBD11A6QL63 1104 aa26.58■■□□□ 1.84
TRIM28-202ENST00000341753 TPM3P06753 285 aa26.58■■□□□ 1.84
TRIM28-202ENST00000341753 BEND3Q5T5X7 828 aa26.58■■□□□ 1.84
TRIM28-202ENST00000341753 TNMDQ9H2S6 317 aa26.58■■□□□ 1.84
TRIM28-202ENST00000341753 STK3Q13188 491 aa26.57■■□□□ 1.84
TRIM28-202ENST00000341753 CLASRPQ8N2M8 674 aaKnown RBP26.57■■□□□ 1.84
TRIM28-202ENST00000341753 KCNH5Q8NCM2 988 aa26.57■■□□□ 1.84
TRIM28-202ENST00000341753 DNAAF4Q8WXU2 420 aa26.57■■□□□ 1.84
TRIM28-202ENST00000341753 TAF6LQ9Y6J9 622 aa26.57■■□□□ 1.84
TRIM28-202ENST00000341753 PXDNLA1KZ92 1463 aa26.56■■□□□ 1.84
TRIM28-202ENST00000341753 CREB3L3Q68CJ9 461 aa26.56■■□□□ 1.84
TRIM28-202ENST00000341753 ANKRD7Q92527 254 aa26.56■■□□□ 1.84
TRIM28-202ENST00000341753 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP26.56■■□□□ 1.84
TRIM28-202ENST00000341753 NAA30Q147X3 362 aaPredicted RBP26.56■■□□□ 1.84
TRIM28-202ENST00000341753 NECTIN1Q15223 517 aa26.56■■□□□ 1.84
TRIM28-202ENST00000341753 ANKRD24Q8TF21 1146 aa26.56■■□□□ 1.84
TRIM28-202ENST00000341753 TRIM5Q9C035 493 aa26.56■■□□□ 1.84
TRIM28-202ENST00000341753 PXDNQ92626 1479 aa26.56■■□□□ 1.84
TRIM28-202ENST00000341753 ZKSCAN1P17029 563 aaPredicted RBP26.55■■□□□ 1.84
TRIM28-202ENST00000341753 ZC3H6P61129 1189 aaKnown RBP26.55■■□□□ 1.84
TRIM28-202ENST00000341753 ECHDC1Q9NTX5 307 aa26.55■■□□□ 1.84
TRIM28-202ENST00000341753 CCDC171Q6TFL3 1326 aa26.55■■□□□ 1.84
TRIM28-202ENST00000341753 GOLGA6L4A6NEF3 574 aa26.55■■□□□ 1.84
TRIM28-202ENST00000341753 ARHGEF25Q86VW2 580 aa26.55■■□□□ 1.84
TRIM28-202ENST00000341753 IFIT2P09913 472 aaKnown RBP26.54■■□□□ 1.84
TRIM28-202ENST00000341753 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP26.54■■□□□ 1.84
TRIM28-202ENST00000341753 TTC41PQ6P2S7 1318 aa26.54■■□□□ 1.84
TRIM28-202ENST00000341753 NPHP4O75161 1426 aaPredicted RBP26.54■■□□□ 1.84
TRIM28-202ENST00000341753 CTIFO43310 598 aaKnown RBP26.53■■□□□ 1.84
TRIM28-202ENST00000341753 PROSER3Q2NL68 480 aa26.53■■□□□ 1.84
TRIM28-202ENST00000341753 AACSQ86V21 672 aa26.53■■□□□ 1.84
TRIM28-202ENST00000341753 USP54Q70EL1 1684 aa26.53■■□□□ 1.84
TRIM28-202ENST00000341753 NMIQ13287 307 aaPredicted RBP26.53■■□□□ 1.84
TRIM28-202ENST00000341753 LARP1Q6PKG0 1096 aaKnown RBP26.53■■□□□ 1.84
TRIM28-202ENST00000341753 PROSER2Q86WR7 435 aaPredicted RBP26.53■■□□□ 1.84
TRIM28-202ENST00000341753 SPATA32Q96LK8 384 aa26.53■■□□□ 1.84
TRIM28-202ENST00000341753 TM6SF1Q9BZW5 370 aa26.53■■□□□ 1.84
TRIM28-202ENST00000341753 NCBP1Q09161 790 aaKnown RBP26.52■■□□□ 1.84
TRIM28-202ENST00000341753 PLEKHO1Q53GL0 409 aaPredicted RBP26.52■■□□□ 1.84
TRIM28-202ENST00000341753 HSP90AB4PQ58FF6 505 aa26.52■■□□□ 1.84
TRIM28-202ENST00000341753 AKAP4Q5JQC9 854 aa26.52■■□□□ 1.84
TRIM28-202ENST00000341753 KRT28Q7Z3Y7 464 aa26.52■■□□□ 1.84
TRIM28-202ENST00000341753 DNAJC25Q9H1X3 360 aa26.52■■□□□ 1.84
TRIM28-202ENST00000341753 BABAM1Q9NWV8 329 aa26.51■■□□□ 1.83
TRIM28-202ENST00000341753 USP42Q9H9J4 1324 aaKnown RBP26.51■■□□□ 1.83
TRIM28-202ENST00000341753 SLC27A2O14975 620 aa26.51■■□□□ 1.83
TRIM28-202ENST00000341753 RNMTO43148 476 aaKnown RBP26.5■■□□□ 1.83
TRIM28-202ENST00000341753 NR1I2O75469 434 aa26.5■■□□□ 1.83
TRIM28-202ENST00000341753 ZNF75DP51815 510 aa26.5■■□□□ 1.83
TRIM28-202ENST00000341753 ZSCAN25Q6NSZ9 544 aa26.5■■□□□ 1.83
TRIM28-202ENST00000341753 CCDC8Q9H0W5 538 aaPredicted RBP26.5■■□□□ 1.83
TRIM28-202ENST00000341753 TNNT1P13805 278 aa26.5■■□□□ 1.83
TRIM28-202ENST00000341753 C1orf141Q5JVX7 400 aa26.5■■□□□ 1.83
TRIM28-202ENST00000341753 BICD2Q8TD16 824 aa26.49■■□□□ 1.83
TRIM28-202ENST00000341753 ZNF592Q92610 1267 aa26.49■■□□□ 1.83
TRIM28-202ENST00000341753 KCNB2Q92953 911 aa26.49■■□□□ 1.83
TRIM28-202ENST00000341753 GTPBP4Q9BZE4 634 aaKnown RBP26.49■■□□□ 1.83
TRIM28-202ENST00000341753 LEO1Q8WVC0 666 aaPredicted RBP26.48■■□□□ 1.83
TRIM28-202ENST00000341753 EVI5LQ96CN4 794 aa26.48■■□□□ 1.83
TRIM28-202ENST00000341753 C9orf78Q9NZ63 289 aaPredicted RBP26.48■■□□□ 1.83
TRIM28-202ENST00000341753 A0A0D9SFI3 127 aa26.48■■□□□ 1.83
TRIM28-202ENST00000341753 DDX11Q96FC9 970 aa26.48■■□□□ 1.83
TRIM28-202ENST00000341753 CWF19L2Q2TBE0 894 aaKnown RBP26.47■■□□□ 1.83
TRIM28-202ENST00000341753 CCDC144BQ3MJ40 725 aa26.47■■□□□ 1.83
TRIM28-202ENST00000341753 CCDC144CPQ8IYA2 1237 aa26.47■■□□□ 1.83
TRIM28-202ENST00000341753 GPATCH3Q96I76 525 aa26.47■■□□□ 1.83
TRIM28-202ENST00000341753 TLR7Q9NYK1 1049 aaKnown RBP26.47■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms