RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 WASHC4Q2M389 1173 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 HS1BP3Q53T59 392 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 GIGYF2Q6Y7W6 1299 aaKnown RBP3.83□□□□□ -1.8
CSMD3-202ENST00000339701 GIMAP7Q8NHV1 300 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 CCDC110Q8TBZ0 833 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 API5Q9BZZ5 524 aaKnown RBP3.83□□□□□ -1.8
CSMD3-202ENST00000339701 SHTN1A0MZ66 631 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 FGFR1OPO95684 399 aaKnown RBP3.83□□□□□ -1.8
CSMD3-202ENST00000339701 IBSPP21815 317 aaPredicted RBP3.83□□□□□ -1.8
CSMD3-202ENST00000339701 GCC1Q96CN9 775 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 STMN4Q9H169 189 aaPredicted RBP3.83□□□□□ -1.8
CSMD3-202ENST00000339701 PZPP20742 1482 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 ACEP12821 1306 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 C6orf229H3BNL8 230 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 PPP1R12BO60237 982 aaPredicted RBP3.83□□□□□ -1.8
CSMD3-202ENST00000339701 CDKL5O76039 1030 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 TPRNQ4KMQ1 711 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 SASS6Q6UVJ0 657 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 FAM9BQ8IZU0 186 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 CEP112Q8N8E3 955 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 EYA3Q99504 573 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 POLE3Q9NRF9 147 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 ALDH1B1P30837 517 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 CAVIN4Q5BKX8 364 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 SRRTQ9BXP5 876 aaKnown RBP3.83□□□□□ -1.8
CSMD3-202ENST00000339701 IQCA1LA6NCM1 817 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 ZC3H6P61129 1189 aaKnown RBP3.83□□□□□ -1.8
CSMD3-202ENST00000339701 PDE3AQ14432 1141 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 CCDC73Q6ZRK6 1079 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 FAM200AQ8TCP9 573 aa3.83□□□□□ -1.8
CSMD3-202ENST00000339701 ADGRB3O60242 1522 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 KIF3CO14782 793 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 PABPC4Q13310 644 aaKnown RBP eCLIP3.82□□□□□ -1.8
CSMD3-202ENST00000339701 FAM43BQ6ZT52 329 aaPredicted RBP3.82□□□□□ -1.8
CSMD3-202ENST00000339701 TNPO1Q92973 898 aaKnown RBP3.82□□□□□ -1.8
CSMD3-202ENST00000339701 USP25Q9UHP3 1055 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 GOLIM4O00461 696 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 CCDC172P0C7W6 258 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 PRPHP41219 470 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 IQCDQ96DY2 449 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 CFAP45Q9UL16 551 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 GOLGA6CA6NDK9 693 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 GOLGA6BA6NDN3 693 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 CCDC85CA6NKD9 419 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 GOLGA6DP0CG33 693 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 TUBB2AQ13885 445 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 TRAPPC3LQ5T215 181 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 KRT27Q7Z3Y8 459 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 USP37Q86T82 979 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 TUBB2BQ9BVA1 445 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 PICK1Q9NRD5 415 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 GOLGA6AQ9NYA3 693 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 NR2E3Q9Y5X4 410 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 ATP7BP35670 1465 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 CHD2O14647 1828 aaKnown RBP3.82□□□□□ -1.8
CSMD3-202ENST00000339701 ZBTB17Q13105 803 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 C6orf163Q5TEZ5 329 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 PPP1R42Q7Z4L9 355 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 EXOC4Q96A65 974 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 TTC14Q96N46 770 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 NAA15Q9BXJ9 866 aaKnown RBP3.82□□□□□ -1.8
CSMD3-202ENST00000339701 OVOS2A0A0G2JMS6 1433 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 PALM3A6NDB9 673 aaPredicted RBP3.82□□□□□ -1.8
CSMD3-202ENST00000339701 PLIN1O60240 522 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 POTEJP0CG39 1038 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 RIPPLY1Q0D2K3 151 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 BIRC2Q13490 618 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 IBTKQ9P2D0 1353 aaPredicted RBP3.82□□□□□ -1.8
CSMD3-202ENST00000339701 IQSEC2Q5JU85 1478 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 NWD1Q149M9 1564 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 C3P01024 1663 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 NAIPQ13075 1403 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 PIK3C2BO00750 1634 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 PEAK1Q9H792 1746 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 CTAGE5O15320 804 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 EPB41L2O43491 1005 aaKnown RBP3.82□□□□□ -1.8
CSMD3-202ENST00000339701 CEBPAP49715 358 aaPredicted RBP3.82□□□□□ -1.8
CSMD3-202ENST00000339701 CCDC6Q16204 474 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 SPECC1LQ69YQ0 1117 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 C2orf69Q8N8R5 385 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 GOLGA1Q92805 767 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 TACO1Q9BSH4 297 aaKnown RBP3.82□□□□□ -1.8
CSMD3-202ENST00000339701 KRT32Q14532 448 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 GAS2L2Q8NHY3 880 aa3.82□□□□□ -1.8
CSMD3-202ENST00000339701 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.82□□□□□ -1.8
CSMD3-202ENST00000339701 PRC1O43663 620 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 PPP1R2P41236 205 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 NIM1KQ8IY84 436 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 DCCP43146 1447 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 FOXO3O43524 673 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 EIF2S2P20042 333 aaKnown RBP3.81□□□□□ -1.8
CSMD3-202ENST00000339701 SPOUT1Q5T280 376 aaKnown RBP3.81□□□□□ -1.8
CSMD3-202ENST00000339701 PPFIBP2Q8ND30 876 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 RNF216Q9NWF9 866 aaPredicted RBP3.81□□□□□ -1.8
CSMD3-202ENST00000339701 PDZRN3Q9UPQ7 1066 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 CSADQ9Y600 493 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 MNAT1P51948 309 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 OLFM4Q6UX06 510 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 KIAA1524Q8TCG1 905 aa3.81□□□□□ -1.8
CSMD3-202ENST00000339701 BABAM1Q9NWV8 329 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms