RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 FAM89AQ96GI7 184 aa20.89■□□□□ 0.93
SHOX-201ENST00000334060 ZBTB7AO95365 584 aa20.88■□□□□ 0.93
SHOX-201ENST00000334060 KAZALD1Q96I82 304 aa20.88■□□□□ 0.93
SHOX-201ENST00000334060 EPHA10Q5JZY3 1008 aa20.87■□□□□ 0.93
SHOX-201ENST00000334060 QSER1Q2KHR3 1735 aa20.87■□□□□ 0.93
SHOX-201ENST00000334060 CCT4P50991 539 aaKnown RBP20.86■□□□□ 0.93
SHOX-201ENST00000334060 UBE3BQ7Z3V4 1068 aa20.86■□□□□ 0.93
SHOX-201ENST00000334060 CASZ1Q86V15 1759 aa20.86■□□□□ 0.93
SHOX-201ENST00000334060 CASP7P55210 303 aa20.86■□□□□ 0.93
SHOX-201ENST00000334060 NEXNQ0ZGT2 675 aa20.86■□□□□ 0.93
SHOX-201ENST00000334060 CARMIL3Q8ND23 1372 aa20.86■□□□□ 0.93
SHOX-201ENST00000334060 C3orf67Q6ZVT6 689 aa20.85■□□□□ 0.93
SHOX-201ENST00000334060 SUCLG2Q96I99 432 aa20.85■□□□□ 0.93
SHOX-201ENST00000334060 ABCC12Q96J65 1359 aa20.85■□□□□ 0.93
SHOX-201ENST00000334060 NTSR2O95665 410 aa20.85■□□□□ 0.93
SHOX-201ENST00000334060 CWC25Q9NXE8 425 aaPredicted RBP20.85■□□□□ 0.93
SHOX-201ENST00000334060 ATF5Q9Y2D1 282 aaPredicted RBP20.85■□□□□ 0.93
SHOX-201ENST00000334060 COL24A1Q17RW2 1714 aa20.84■□□□□ 0.93
SHOX-201ENST00000334060 TM4SF1P30408 202 aa20.84■□□□□ 0.93
SHOX-201ENST00000334060 CLEC4GQ6UXB4 293 aa20.84■□□□□ 0.93
SHOX-201ENST00000334060 ZBTB40Q9NUA8 1239 aa20.84■□□□□ 0.93
SHOX-201ENST00000334060 PCDHB15Q9Y5E8 787 aa20.84■□□□□ 0.93
SHOX-201ENST00000334060 COL4A1P02462 1669 aa20.84■□□□□ 0.93
SHOX-201ENST00000334060 GRM8O00222 908 aa20.83■□□□□ 0.93
SHOX-201ENST00000334060 CCDC85AQ96PX6 553 aaPredicted RBP20.83■□□□□ 0.93
SHOX-201ENST00000334060 LRRFIP2Q9Y608 721 aaKnown RBP20.83■□□□□ 0.93
SHOX-201ENST00000334060 POLRMTO00411 1230 aaKnown RBP20.83■□□□□ 0.92
SHOX-201ENST00000334060 ALDH1L1O75891 902 aa20.83■□□□□ 0.92
SHOX-201ENST00000334060 MMP10P09238 476 aa20.83■□□□□ 0.92
SHOX-201ENST00000334060 HCLS1P14317 486 aaPredicted RBP20.83■□□□□ 0.92
SHOX-201ENST00000334060 ERFEQ4G0M1 354 aa20.83■□□□□ 0.92
SHOX-201ENST00000334060 UTRNP46939 3433 aa20.82■□□□□ 0.92
SHOX-201ENST00000334060 SLC51AQ86UW1 340 aa20.82■□□□□ 0.92
SHOX-201ENST00000334060 CCDC191Q8NCU4 936 aa20.82■□□□□ 0.92
SHOX-201ENST00000334060 C9orf78Q9NZ63 289 aaPredicted RBP20.82■□□□□ 0.92
SHOX-201ENST00000334060 TRMT112Q9UI30 125 aaKnown RBP20.82■□□□□ 0.92
SHOX-201ENST00000334060 ZNF652Q9Y2D9 606 aa20.82■□□□□ 0.92
SHOX-201ENST00000334060 H7C1W4 665 aa20.81■□□□□ 0.92
SHOX-201ENST00000334060 TRIM28Q13263 835 aaKnown RBP20.81■□□□□ 0.92
SHOX-201ENST00000334060 SETDB2Q96T68 719 aa20.81■□□□□ 0.92
SHOX-201ENST00000334060 DDX19BQ9UMR2 479 aa20.81■□□□□ 0.92
SHOX-201ENST00000334060 TNRC6CQ9HCJ0 1690 aaKnown RBP20.81■□□□□ 0.92
SHOX-201ENST00000334060 HSP90AB3PQ58FF7 597 aa20.8■□□□□ 0.92
SHOX-201ENST00000334060 SIRT2Q8IXJ6 389 aa20.8■□□□□ 0.92
SHOX-201ENST00000334060 FLAD1Q8NFF5 587 aa20.8■□□□□ 0.92
SHOX-201ENST00000334060 UTYO14607 1347 aa20.79■□□□□ 0.92
SHOX-201ENST00000334060 DDX60Q8IY21 1712 aaKnown RBP20.79■□□□□ 0.92
SHOX-201ENST00000334060 SOCS7O14512 581 aa20.79■□□□□ 0.92
SHOX-201ENST00000334060 SERPINB2P05120 415 aa20.79■□□□□ 0.92
SHOX-201ENST00000334060 BICC1Q9H694 974 aaKnown RBP20.79■□□□□ 0.92
SHOX-201ENST00000334060 NEFLP07196 543 aa20.78■□□□□ 0.92
SHOX-201ENST00000334060 UBTFL1P0CB47 393 aaPredicted RBP20.78■□□□□ 0.92
SHOX-201ENST00000334060 MS4A1P11836 297 aa20.78■□□□□ 0.92
SHOX-201ENST00000334060 PRR5LQ6MZQ0 368 aa20.78■□□□□ 0.92
SHOX-201ENST00000334060 NBPF5PQ86XG9 351 aaPredicted RBP20.78■□□□□ 0.92
SHOX-201ENST00000334060 ANKRD44Q8N8A2 993 aa20.78■□□□□ 0.92
SHOX-201ENST00000334060 ZBTB38Q8NAP3 1195 aaPredicted RBP20.78■□□□□ 0.92
SHOX-201ENST00000334060 UTP14AQ9BVJ6 771 aaKnown RBP20.78■□□□□ 0.92
SHOX-201ENST00000334060 PCCAP05165 728 aaPredicted RBP20.77■□□□□ 0.92
SHOX-201ENST00000334060 PNMA6EA0A0J9YXQ4 647 aa20.77■□□□□ 0.92
SHOX-201ENST00000334060 FOXO4P98177 505 aa20.77■□□□□ 0.92
SHOX-201ENST00000334060 ANP32EQ9BTT0 268 aa20.77■□□□□ 0.92
SHOX-201ENST00000334060 IRS4O14654 1257 aaPredicted RBP20.76■□□□□ 0.91
SHOX-201ENST00000334060 PARP10Q53GL7 1025 aa20.76■□□□□ 0.91
SHOX-201ENST00000334060 NLGN1Q8N2Q7 840 aa20.76■□□□□ 0.91
SHOX-201ENST00000334060 KLHDC4Q8TBB5 520 aa20.76■□□□□ 0.91
SHOX-201ENST00000334060 SH3TC1Q8TE82 1336 aa20.75■□□□□ 0.91
SHOX-201ENST00000334060 IGHDP01880 384 aa20.74■□□□□ 0.91
SHOX-201ENST00000334060 B4GALNT3Q6L9W6 998 aa20.74■□□□□ 0.91
SHOX-201ENST00000334060 CEP85Q6P2H3 762 aa20.74■□□□□ 0.91
SHOX-201ENST00000334060 TAF1P21675 1872 aa20.74■□□□□ 0.91
SHOX-201ENST00000334060 ANKRD31Q8N7Z5 1873 aa20.73■□□□□ 0.91
SHOX-201ENST00000334060 NRXN2Q9P2S2 1712 aa20.73■□□□□ 0.91
SHOX-201ENST00000334060 GNAI2P04899 355 aa20.73■□□□□ 0.91
SHOX-201ENST00000334060 PPP1R42Q7Z4L9 355 aa20.73■□□□□ 0.91
SHOX-201ENST00000334060 CNBD1Q8NA66 436 aa20.73■□□□□ 0.91
SHOX-201ENST00000334060 LAMB2P55268 1798 aa20.72■□□□□ 0.91
SHOX-201ENST00000334060 PTGER2P43116 358 aa20.72■□□□□ 0.91
SHOX-201ENST00000334060 LMBR1LQ6UX01 489 aa20.72■□□□□ 0.91
SHOX-201ENST00000334060 SGIP1Q9BQI5 828 aa20.72■□□□□ 0.91
SHOX-201ENST00000334060 GNAI3P08754 354 aa20.72■□□□□ 0.91
SHOX-201ENST00000334060 FAM161AQ3B820 660 aa20.72■□□□□ 0.91
SHOX-201ENST00000334060 RGL2O15211 777 aa20.71■□□□□ 0.91
SHOX-201ENST00000334060 GTF2E1P29083 439 aaPredicted RBP20.71■□□□□ 0.91
SHOX-201ENST00000334060 SKAP1Q86WV1 359 aa20.71■□□□□ 0.91
SHOX-201ENST00000334060 ZNF594Q96JF6 807 aaPredicted RBP20.71■□□□□ 0.91
SHOX-201ENST00000334060 GREM2Q9H772 168 aa20.71■□□□□ 0.91
SHOX-201ENST00000334060 SEC31BQ9NQW1 1179 aa20.71■□□□□ 0.91
SHOX-201ENST00000334060 PA2G4Q9UQ80 394 aaKnown RBP20.71■□□□□ 0.91
SHOX-201ENST00000334060 CDHR2Q9BYE9 1310 aa20.7■□□□□ 0.91
SHOX-201ENST00000334060 MTFR1LQ9H019 292 aa20.7■□□□□ 0.9
SHOX-201ENST00000334060 PARP3Q9Y6F1 533 aa20.7■□□□□ 0.9
SHOX-201ENST00000334060 NPHP1O15259 732 aa20.7■□□□□ 0.9
SHOX-201ENST00000334060 HMGB2P26583 209 aaKnown RBP20.7■□□□□ 0.9
SHOX-201ENST00000334060 TPTE2Q6XPS3 522 aa20.7■□□□□ 0.9
SHOX-201ENST00000334060 WWC3Q9ULE0 1092 aa20.7■□□□□ 0.9
SHOX-201ENST00000334060 CHMP3Q9Y3E7 222 aa20.7■□□□□ 0.9
SHOX-201ENST00000334060 TTLL11Q8NHH1 800 aa20.69■□□□□ 0.9
SHOX-201ENST00000334060 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.69■□□□□ 0.9
SHOX-201ENST00000334060 CTSWP56202 376 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms