RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 STYK1Q6J9G0 422 aa17.95■□□□□ 0.46
LIMS1-201ENST00000332345 KSR2Q6VAB6 950 aa17.95■□□□□ 0.46
LIMS1-201ENST00000332345 CNKSR1Q969H4 720 aa17.95■□□□□ 0.46
LIMS1-201ENST00000332345 TRMT112Q9UI30 125 aaKnown RBP17.95■□□□□ 0.46
LIMS1-201ENST00000332345 RNF123Q5XPI4 1314 aa17.95■□□□□ 0.46
LIMS1-201ENST00000332345 NTSR2O95665 410 aa17.94■□□□□ 0.46
LIMS1-201ENST00000332345 NPR1P16066 1061 aa17.94■□□□□ 0.46
LIMS1-201ENST00000332345 MAPK8IP2Q13387 824 aaPredicted RBP17.94■□□□□ 0.46
LIMS1-201ENST00000332345 ARHGAP27Q6ZUM4 889 aa17.94■□□□□ 0.46
LIMS1-201ENST00000332345 ISCA1Q9BUE6 129 aa17.94■□□□□ 0.46
LIMS1-201ENST00000332345 PI4KAP2A4QPH2 592 aa17.93■□□□□ 0.46
LIMS1-201ENST00000332345 ATP5J2-PTCD1G3V325 749 aa17.93■□□□□ 0.46
LIMS1-201ENST00000332345 SLC10A5Q5PT55 438 aa17.93■□□□□ 0.46
LIMS1-201ENST00000332345 PI4KAP1Q8N8J0 262 aa17.93■□□□□ 0.46
LIMS1-201ENST00000332345 CDCA7LQ96GN5 454 aa17.93■□□□□ 0.46
LIMS1-201ENST00000332345 NLRP3Q96P20 1036 aa17.93■□□□□ 0.46
LIMS1-201ENST00000332345 METTL22Q9BUU2 404 aaPredicted RBP17.93■□□□□ 0.46
LIMS1-201ENST00000332345 ANKRD36CQ5JPF3 1778 aa17.93■□□□□ 0.46
LIMS1-201ENST00000332345 ALDH1B1P30837 517 aa17.92■□□□□ 0.46
LIMS1-201ENST00000332345 FLIIQ13045 1269 aa17.92■□□□□ 0.46
LIMS1-201ENST00000332345 G2E3Q7L622 706 aa17.92■□□□□ 0.46
LIMS1-201ENST00000332345 TRMT2AQ8IZ69 625 aaKnown RBP17.92■□□□□ 0.46
LIMS1-201ENST00000332345 MYD88Q99836 296 aa17.92■□□□□ 0.46
LIMS1-201ENST00000332345 MAP3K2Q9Y2U5 619 aa17.92■□□□□ 0.46
LIMS1-201ENST00000332345 ARFGEF1Q9Y6D6 1849 aa17.92■□□□□ 0.46
LIMS1-201ENST00000332345 SH3TC1Q8TE82 1336 aa17.92■□□□□ 0.46
LIMS1-201ENST00000332345 DLEC1Q9Y238 1755 aa17.91■□□□□ 0.46
LIMS1-201ENST00000332345 HNRNPUQ00839 825 aaKnown RBP eCLIP17.91■□□□□ 0.46
LIMS1-201ENST00000332345 NEXNQ0ZGT2 675 aa17.91■□□□□ 0.46
LIMS1-201ENST00000332345 ZNF428Q96B54 188 aa17.91■□□□□ 0.46
LIMS1-201ENST00000332345 ARFGEF2Q9Y6D5 1785 aa17.9■□□□□ 0.46
LIMS1-201ENST00000332345 FKBP5Q13451 457 aaPredicted RBP17.9■□□□□ 0.46
LIMS1-201ENST00000332345 CRY2Q49AN0 593 aa17.9■□□□□ 0.46
LIMS1-201ENST00000332345 CCDC191Q8NCU4 936 aa17.9■□□□□ 0.46
LIMS1-201ENST00000332345 RPGRQ92834 1020 aaKnown RBP17.9■□□□□ 0.46
LIMS1-201ENST00000332345 RIC1Q4ADV7 1423 aa17.89■□□□□ 0.46
LIMS1-201ENST00000332345 HSP90B1P14625 803 aaKnown RBP17.89■□□□□ 0.45
LIMS1-201ENST00000332345 ABCC12Q96J65 1359 aa17.89■□□□□ 0.45
LIMS1-201ENST00000332345 ZBTB38Q8NAP3 1195 aaPredicted RBP17.88■□□□□ 0.45
LIMS1-201ENST00000332345 FAM89AQ96GI7 184 aa17.88■□□□□ 0.45
LIMS1-201ENST00000332345 RBM17Q96I25 401 aaKnown RBP17.88■□□□□ 0.45
LIMS1-201ENST00000332345 CWC25Q9NXE8 425 aaPredicted RBP17.88■□□□□ 0.45
LIMS1-201ENST00000332345 C21orf2O43822 256 aa17.87■□□□□ 0.45
LIMS1-201ENST00000332345 CT47B1P0C2W7 299 aaPredicted RBP17.87■□□□□ 0.45
LIMS1-201ENST00000332345 HCLS1P14317 486 aaPredicted RBP17.87■□□□□ 0.45
LIMS1-201ENST00000332345 HOXA10P31260 410 aaPredicted RBP17.87■□□□□ 0.45
LIMS1-201ENST00000332345 SOGA3Q5TF21 947 aa17.87■□□□□ 0.45
LIMS1-201ENST00000332345 PRPF40BQ6NWY9 871 aaKnown RBP17.87■□□□□ 0.45
LIMS1-201ENST00000332345 SYNE4Q8N205 404 aa17.87■□□□□ 0.45
LIMS1-201ENST00000332345 COL11A2P13942 1736 aaPredicted RBP17.86■□□□□ 0.45
LIMS1-201ENST00000332345 DNAAF4Q8WXU2 420 aa17.86■□□□□ 0.45
LIMS1-201ENST00000332345 CRAMP1Q96RY5 1269 aa17.86■□□□□ 0.45
LIMS1-201ENST00000332345 ZNF219Q9P2Y4 722 aaPredicted RBP17.86■□□□□ 0.45
LIMS1-201ENST00000332345 ADCY9O60503 1353 aa17.86■□□□□ 0.45
LIMS1-201ENST00000332345 PCCAP05165 728 aaPredicted RBP17.85■□□□□ 0.45
LIMS1-201ENST00000332345 RTL5Q5HYW3 569 aaPredicted RBP17.85■□□□□ 0.45
LIMS1-201ENST00000332345 SLX4Q8IY92 1834 aa17.85■□□□□ 0.45
LIMS1-201ENST00000332345 IRS4O14654 1257 aaPredicted RBP17.84■□□□□ 0.45
LIMS1-201ENST00000332345 IGKV5-2P06315 115 aa17.84■□□□□ 0.45
LIMS1-201ENST00000332345 ALDH1L2Q3SY69 923 aa17.84■□□□□ 0.45
LIMS1-201ENST00000332345 MRPL50Q8N5N7 158 aaKnown RBP17.84■□□□□ 0.45
LIMS1-201ENST00000332345 NEURL1BA8MQ27 555 aa17.83■□□□□ 0.44
LIMS1-201ENST00000332345 C3orf67Q6ZVT6 689 aa17.83■□□□□ 0.44
LIMS1-201ENST00000332345 DDX46Q7L014 1031 aaKnown RBP17.83■□□□□ 0.44
LIMS1-201ENST00000332345 LINS1Q8NG48 757 aa17.83■□□□□ 0.44
LIMS1-201ENST00000332345 C7orf43Q8WVR3 580 aa17.83■□□□□ 0.44
LIMS1-201ENST00000332345 SSH1Q8WYL5 1049 aa17.83■□□□□ 0.44
LIMS1-201ENST00000332345 CACNA1SQ13698 1873 aa17.83■□□□□ 0.44
LIMS1-201ENST00000332345 BBOX1O75936 387 aa17.82■□□□□ 0.44
LIMS1-201ENST00000332345 SF3B3Q15393 1217 aaKnown RBP17.82■□□□□ 0.44
LIMS1-201ENST00000332345 CWF19L2Q2TBE0 894 aaKnown RBP17.82■□□□□ 0.44
LIMS1-201ENST00000332345 TMX4Q9H1E5 349 aaPredicted RBP17.82■□□□□ 0.44
LIMS1-201ENST00000332345 TNRC6CQ9HCJ0 1690 aaKnown RBP17.82■□□□□ 0.44
LIMS1-201ENST00000332345 F6X3S4 739 aa17.81■□□□□ 0.44
LIMS1-201ENST00000332345 GRIPAP1Q4V328 841 aa17.81■□□□□ 0.44
LIMS1-201ENST00000332345 CCDC93Q567U6 631 aa17.81■□□□□ 0.44
LIMS1-201ENST00000332345 C9orf131Q5VYM1 1079 aa17.81■□□□□ 0.44
LIMS1-201ENST00000332345 CC2D2BQ6DHV5 1058 aa17.81■□□□□ 0.44
LIMS1-201ENST00000332345 RTKN2Q8IZC4 609 aa17.81■□□□□ 0.44
LIMS1-201ENST00000332345 PTPRCP08575 1304 aa17.8■□□□□ 0.44
LIMS1-201ENST00000332345 ZBED9Q6R2W3 1325 aa17.8■□□□□ 0.44
LIMS1-201ENST00000332345 PDE8AO60658 829 aa17.8■□□□□ 0.44
LIMS1-201ENST00000332345 LMNB1P20700 586 aa17.8■□□□□ 0.44
LIMS1-201ENST00000332345 GCKRQ14397 625 aa17.8■□□□□ 0.44
LIMS1-201ENST00000332345 SMC4Q9NTJ3 1288 aa17.8■□□□□ 0.44
LIMS1-201ENST00000332345 SBF1O95248 1867 aa17.8■□□□□ 0.44
LIMS1-201ENST00000332345 H7C1W4 665 aa17.79■□□□□ 0.44
LIMS1-201ENST00000332345 BEND3Q5T5X7 828 aa17.79■□□□□ 0.44
LIMS1-201ENST00000332345 SLC4A10Q6U841 1118 aa17.79■□□□□ 0.44
LIMS1-201ENST00000332345 ZNF784Q8NCA9 323 aaPredicted RBP17.79■□□□□ 0.44
LIMS1-201ENST00000332345 CNKSR2Q8WXI2 1034 aa17.79■□□□□ 0.44
LIMS1-201ENST00000332345 JARID2Q92833 1246 aaPredicted RBP17.79■□□□□ 0.44
LIMS1-201ENST00000332345 RNF181Q9P0P0 153 aa17.79■□□□□ 0.44
LIMS1-201ENST00000332345 CDHR2Q9BYE9 1310 aa17.78■□□□□ 0.44
LIMS1-201ENST00000332345 NFKBIEO00221 500 aa17.78■□□□□ 0.44
LIMS1-201ENST00000332345 PPEF1O14829 653 aaPredicted RBP17.78■□□□□ 0.44
LIMS1-201ENST00000332345 RASSF7Q02833 373 aa17.78■□□□□ 0.44
LIMS1-201ENST00000332345 CCDC152Q4G0S7 254 aa17.78■□□□□ 0.44
LIMS1-201ENST00000332345 BCL2L13Q9BXK5 485 aa17.78■□□□□ 0.44
LIMS1-201ENST00000332345 TAOK3Q9H2K8 898 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms