RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 HS1BP3Q53T59 392 aa19.35■□□□□ 0.69
USHBP1-202ENST00000324554 BICC1Q9H694 974 aaKnown RBP19.35■□□□□ 0.69
USHBP1-202ENST00000324554 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.35■□□□□ 0.69
USHBP1-202ENST00000324554 ABCC6O95255 1503 aa19.35■□□□□ 0.69
USHBP1-202ENST00000324554 SCN11AQ9UI33 1791 aa19.34■□□□□ 0.69
USHBP1-202ENST00000324554 AK2P54819 239 aa19.34■□□□□ 0.69
USHBP1-202ENST00000324554 AACSQ86V21 672 aa19.34■□□□□ 0.69
USHBP1-202ENST00000324554 TTC5Q8N0Z6 440 aa19.34■□□□□ 0.69
USHBP1-202ENST00000324554 USP16Q9Y5T5 823 aa19.34■□□□□ 0.69
USHBP1-202ENST00000324554 GADD45BO75293 160 aaPredicted RBP19.33■□□□□ 0.69
USHBP1-202ENST00000324554 SASH1O94885 1247 aa19.33■□□□□ 0.69
USHBP1-202ENST00000324554 RNF214Q8ND24 703 aa19.33■□□□□ 0.69
USHBP1-202ENST00000324554 RUFY2Q8WXA3 655 aa19.33■□□□□ 0.69
USHBP1-202ENST00000324554 NOL7Q9UMY1 257 aaKnown RBP19.33■□□□□ 0.69
USHBP1-202ENST00000324554 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.33■□□□□ 0.69
USHBP1-202ENST00000324554 WDR33Q9C0J8 1336 aaKnown RBP19.33■□□□□ 0.69
USHBP1-202ENST00000324554 RPAP1Q9BWH6 1393 aaPredicted RBP19.33■□□□□ 0.69
USHBP1-202ENST00000324554 C5P01031 1676 aa19.33■□□□□ 0.69
USHBP1-202ENST00000324554 IGKV5-2P06315 115 aa19.33■□□□□ 0.68
USHBP1-202ENST00000324554 UBE2Q2Q8WVN8 375 aa19.33■□□□□ 0.68
USHBP1-202ENST00000324554 TCHHQ07283 1943 aa19.33■□□□□ 0.68
USHBP1-202ENST00000324554 PCDH11XQ9BZA7 1347 aa19.33■□□□□ 0.68
USHBP1-202ENST00000324554 PCDH11YQ9BZA8 1340 aa19.33■□□□□ 0.68
USHBP1-202ENST00000324554 PTH1RQ03431 593 aa19.32■□□□□ 0.68
USHBP1-202ENST00000324554 RUFY3Q7L099 469 aa19.32■□□□□ 0.68
USHBP1-202ENST00000324554 EVI5LQ96CN4 794 aa19.32■□□□□ 0.68
USHBP1-202ENST00000324554 OFD1O75665 1012 aa19.32■□□□□ 0.68
USHBP1-202ENST00000324554 LARP6Q9BRS8 491 aaKnown RBP19.32■□□□□ 0.68
USHBP1-202ENST00000324554 RIC3Q7Z5B4 369 aa19.31■□□□□ 0.68
USHBP1-202ENST00000324554 USP48Q86UV5 1035 aa19.31■□□□□ 0.68
USHBP1-202ENST00000324554 EAF2Q96CJ1 260 aaPredicted RBP19.31■□□□□ 0.68
USHBP1-202ENST00000324554 LIMCH1Q9UPQ0 1083 aa19.31■□□□□ 0.68
USHBP1-202ENST00000324554 CASTP20810 708 aaKnown RBP19.31■□□□□ 0.68
USHBP1-202ENST00000324554 PKD1L3Q7Z443 1732 aa19.3■□□□□ 0.68
USHBP1-202ENST00000324554 PTCD1O75127 700 aaKnown RBP19.3■□□□□ 0.68
USHBP1-202ENST00000324554 G3BP1Q13283 466 aaKnown RBP eCLIP19.3■□□□□ 0.68
USHBP1-202ENST00000324554 CPA1P15085 419 aa19.3■□□□□ 0.68
USHBP1-202ENST00000324554 NEURL1BA8MQ27 555 aa19.29■□□□□ 0.68
USHBP1-202ENST00000324554 KCNB2Q92953 911 aa19.29■□□□□ 0.68
USHBP1-202ENST00000324554 PRPF40BQ6NWY9 871 aaKnown RBP19.29■□□□□ 0.68
USHBP1-202ENST00000324554 ADCK5Q3MIX3 580 aa19.28■□□□□ 0.68
USHBP1-202ENST00000324554 XAGE3Q8WTP9 111 aa19.28■□□□□ 0.68
USHBP1-202ENST00000324554 CCDC8Q9H0W5 538 aaPredicted RBP19.28■□□□□ 0.68
USHBP1-202ENST00000324554 TSPY26PQ9H489 355 aa19.28■□□□□ 0.68
USHBP1-202ENST00000324554 TLR7Q9NYK1 1049 aaKnown RBP19.28■□□□□ 0.68
USHBP1-202ENST00000324554 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.28■□□□□ 0.68
USHBP1-202ENST00000324554 CCDC171Q6TFL3 1326 aa19.28■□□□□ 0.68
USHBP1-202ENST00000324554 ZNF500O60304 480 aaPredicted RBP19.27■□□□□ 0.68
USHBP1-202ENST00000324554 NEXNQ0ZGT2 675 aa19.27■□□□□ 0.68
USHBP1-202ENST00000324554 GCKRQ14397 625 aa19.27■□□□□ 0.68
USHBP1-202ENST00000324554 SIL1Q9H173 461 aa19.27■□□□□ 0.68
USHBP1-202ENST00000324554 LARGE1O95461 756 aa19.27■□□□□ 0.68
USHBP1-202ENST00000324554 TPM2P07951 284 aa19.27■□□□□ 0.68
USHBP1-202ENST00000324554 NECTIN1Q15223 517 aa19.27■□□□□ 0.68
USHBP1-202ENST00000324554 VPS53Q5VIR6 699 aa19.27■□□□□ 0.68
USHBP1-202ENST00000324554 COPS6Q7L5N1 327 aa19.27■□□□□ 0.68
USHBP1-202ENST00000324554 JAKMIP1Q96N16 626 aaKnown RBP19.27■□□□□ 0.68
USHBP1-202ENST00000324554 FMNL2Q96PY5 1086 aa19.27■□□□□ 0.68
USHBP1-202ENST00000324554 TM6SF1Q9BZW5 370 aa19.27■□□□□ 0.68
USHBP1-202ENST00000324554 KAT6BQ8WYB5 2073 aa19.27■□□□□ 0.67
USHBP1-202ENST00000324554 UBAP1LF5GYI3 381 aa19.26■□□□□ 0.67
USHBP1-202ENST00000324554 KLHDC4Q8TBB5 520 aa19.26■□□□□ 0.67
USHBP1-202ENST00000324554 METTL22Q9BUU2 404 aaPredicted RBP19.26■□□□□ 0.67
USHBP1-202ENST00000324554 ZSWIM6Q9HCJ5 1215 aa19.26■□□□□ 0.67
USHBP1-202ENST00000324554 ZKSCAN5Q9Y2L8 839 aa19.26■□□□□ 0.67
USHBP1-202ENST00000324554 PARP4Q9UKK3 1724 aaKnown RBP19.26■□□□□ 0.67
USHBP1-202ENST00000324554 TOM1O60784 492 aa19.26■□□□□ 0.67
USHBP1-202ENST00000324554 SNRPA1P09661 255 aaKnown RBP19.26■□□□□ 0.67
USHBP1-202ENST00000324554 HSP90AA2PQ14568 343 aaPredicted RBP19.26■□□□□ 0.67
USHBP1-202ENST00000324554 LRP10Q7Z4F1 713 aa19.26■□□□□ 0.67
USHBP1-202ENST00000324554 SYAP1Q96A49 352 aaPredicted RBP19.26■□□□□ 0.67
USHBP1-202ENST00000324554 FAM227BQ96M60 508 aa19.26■□□□□ 0.67
USHBP1-202ENST00000324554 MYD88Q99836 296 aa19.26■□□□□ 0.67
USHBP1-202ENST00000324554 CNPY2Q9Y2B0 182 aa19.26■□□□□ 0.67
USHBP1-202ENST00000324554 MRC1P22897 1456 aa19.26■□□□□ 0.67
USHBP1-202ENST00000324554 HIP1O00291 1037 aa19.25■□□□□ 0.67
USHBP1-202ENST00000324554 ZSCAN22P10073 491 aaPredicted RBP19.25■□□□□ 0.67
USHBP1-202ENST00000324554 SYT1P21579 422 aa19.25■□□□□ 0.67
USHBP1-202ENST00000324554 NMIQ13287 307 aaPredicted RBP19.25■□□□□ 0.67
USHBP1-202ENST00000324554 EPHA10Q5JZY3 1008 aa19.25■□□□□ 0.67
USHBP1-202ENST00000324554 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.25■□□□□ 0.67
USHBP1-202ENST00000324554 PDRG1Q9NUG6 133 aa19.25■□□□□ 0.67
USHBP1-202ENST00000324554 AHDC1Q5TGY3 1603 aaPredicted RBP19.25■□□□□ 0.67
USHBP1-202ENST00000324554 STX6O43752 255 aa19.25■□□□□ 0.67
USHBP1-202ENST00000324554 TMEM87AQ8NBN3 555 aa19.25■□□□□ 0.67
USHBP1-202ENST00000324554 SMC3Q9UQE7 1217 aa19.25■□□□□ 0.67
USHBP1-202ENST00000324554 PHLPP1O60346 1717 aa19.24■□□□□ 0.67
USHBP1-202ENST00000324554 RRP9O43818 475 aaKnown RBP19.24■□□□□ 0.67
USHBP1-202ENST00000324554 DTNBO60941 627 aa19.24■□□□□ 0.67
USHBP1-202ENST00000324554 SNRKQ9NRH2 765 aa19.24■□□□□ 0.67
USHBP1-202ENST00000324554 RBM8AQ9Y5S9 174 aaKnown RBP19.24■□□□□ 0.67
USHBP1-202ENST00000324554 CYP46A1Q9Y6A2 500 aa19.24■□□□□ 0.67
USHBP1-202ENST00000324554 MAP4K1Q92918 833 aa19.24■□□□□ 0.67
USHBP1-202ENST00000324554 BOLA2Q9H3K6 86 aa19.24■□□□□ 0.67
USHBP1-202ENST00000324554 CREB3L3Q68CJ9 461 aa19.23■□□□□ 0.67
USHBP1-202ENST00000324554 ANKRD13DQ6ZTN6 518 aa19.23■□□□□ 0.67
USHBP1-202ENST00000324554 COL16A1Q07092 1604 aaPredicted RBP19.23■□□□□ 0.67
USHBP1-202ENST00000324554 ZKSCAN1P17029 563 aaPredicted RBP19.23■□□□□ 0.67
USHBP1-202ENST00000324554 CCDC83Q8IWF9 413 aa19.23■□□□□ 0.67
USHBP1-202ENST00000324554 CCDC39Q9UFE4 941 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms