RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 SH2B1Q9NRF2 756 aaPredicted RBP9.05□□□□□ -0.96
CIITA-201ENST00000324288 MRPS9P82933 396 aaKnown RBP9.05□□□□□ -0.96
CIITA-201ENST00000324288 ARID5AQ03989 594 aa9.05□□□□□ -0.96
CIITA-201ENST00000324288 AFAP1Q8N556 730 aa9.05□□□□□ -0.96
CIITA-201ENST00000324288 NEMFO60524 1076 aa9.05□□□□□ -0.96
CIITA-201ENST00000324288 CTCFLQ8NI51 663 aaPredicted RBP9.05□□□□□ -0.96
CIITA-201ENST00000324288 BICD1Q96G01 975 aa9.05□□□□□ -0.96
CIITA-201ENST00000324288 IDEP14735 1019 aa9.05□□□□□ -0.96
CIITA-201ENST00000324288 SEPT6Q14141 434 aa9.05□□□□□ -0.96
CIITA-201ENST00000324288 CCDC129Q6ZRS4 1044 aa9.05□□□□□ -0.96
CIITA-201ENST00000324288 CCDC25Q86WR0 208 aa9.05□□□□□ -0.96
CIITA-201ENST00000324288 CEP83Q9Y592 693 aa9.05□□□□□ -0.96
CIITA-201ENST00000324288 NLRP5P59047 1200 aa9.05□□□□□ -0.96
CIITA-201ENST00000324288 TMEM266Q2M3C6 531 aa9.05□□□□□ -0.96
CIITA-201ENST00000324288 CCDC186Q7Z3E2 898 aa9.05□□□□□ -0.96
CIITA-201ENST00000324288 LIMCH1Q9UPQ0 1083 aa9.05□□□□□ -0.96
CIITA-201ENST00000324288 F6X3S4 739 aa9.05□□□□□ -0.96
CIITA-201ENST00000324288 ANO6Q4KMQ2 910 aa9.05□□□□□ -0.96
CIITA-201ENST00000324288 KIF21BO75037 1637 aa9.05□□□□□ -0.96
CIITA-201ENST00000324288 HGSO14964 777 aaPredicted RBP9.04□□□□□ -0.96
CIITA-201ENST00000324288 SYNCQ9H7C4 482 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 PAXBP1Q9Y5B6 917 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 SARNPP82979 210 aaKnown RBP9.04□□□□□ -0.96
CIITA-201ENST00000324288 NSRP1Q9H0G5 558 aaKnown RBP9.04□□□□□ -0.96
CIITA-201ENST00000324288 CPSF2Q9P2I0 782 aaKnown RBP9.04□□□□□ -0.96
CIITA-201ENST00000324288 EBAG9O00559 213 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 N4BP3O15049 544 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 CCDC194A0A1B0GVG4 234 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 RTEL1-TNFRSF6BF6WH68 1400 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 AKR1B10O60218 316 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 U2AF2P26368 475 aaKnown RBP eCLIP9.04□□□□□ -0.96
CIITA-201ENST00000324288 MPRIPQ6WCQ1 1025 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 SCAND2PQ9GZW5 306 aaPredicted RBP9.04□□□□□ -0.96
CIITA-201ENST00000324288 KCNK9Q9NPC2 374 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 SNRKQ9NRH2 765 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 GOLGA8AA7E2F4 631 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 TTC36A6NLP5 189 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 IFIT3O14879 490 aaKnown RBP9.04□□□□□ -0.96
CIITA-201ENST00000324288 FGFR1OPO95684 399 aaKnown RBP9.04□□□□□ -0.96
CIITA-201ENST00000324288 CAVIN4Q5BKX8 364 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 PPM1EQ8WY54 764 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 MCM5P33992 734 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 DPH6Q7L8W6 267 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 MICU3Q86XE3 530 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 WDR63Q8IWG1 891 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 RRAGDQ9NQL2 400 aaPredicted RBP9.04□□□□□ -0.96
CIITA-201ENST00000324288 CNTRLQ7Z7A1 2325 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 IKBKGQ9Y6K9 419 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 ERBINQ96RT1 1412 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 ADAMTS2O95450 1211 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 GJB2P29033 226 aa9.04□□□□□ -0.96
CIITA-201ENST00000324288 FANCD2Q9BXW9 1451 aa9.03□□□□□ -0.96
CIITA-201ENST00000324288 RPUSD2Q8IZ73 545 aaKnown RBP9.03□□□□□ -0.96
CIITA-201ENST00000324288 NSD3Q9BZ95 1437 aa9.03□□□□□ -0.96
CIITA-201ENST00000324288 AFMP43652 599 aa9.03□□□□□ -0.96
CIITA-201ENST00000324288 ANKRD18BA2A2Z9 1011 aa9.03□□□□□ -0.96
CIITA-201ENST00000324288 CKAP4Q07065 602 aaKnown RBP9.03□□□□□ -0.96
CIITA-201ENST00000324288 RPGRQ92834 1020 aaKnown RBP9.03□□□□□ -0.96
CIITA-201ENST00000324288 TAOK3Q9H2K8 898 aa9.03□□□□□ -0.96
CIITA-201ENST00000324288 PCK1P35558 622 aa9.03□□□□□ -0.96
CIITA-201ENST00000324288 UBASH3AP57075 661 aa9.03□□□□□ -0.96
CIITA-201ENST00000324288 CATIPQ7Z7H3 387 aa9.03□□□□□ -0.96
CIITA-201ENST00000324288 OSCARQ8IYS5 282 aa9.03□□□□□ -0.96
CIITA-201ENST00000324288 USP16Q9Y5T5 823 aa9.03□□□□□ -0.96
CIITA-201ENST00000324288 FERP16591 822 aa9.03□□□□□ -0.96
CIITA-201ENST00000324288 USP48Q86UV5 1035 aa9.03□□□□□ -0.96
CIITA-201ENST00000324288 IFT81Q8WYA0 676 aa9.03□□□□□ -0.96
CIITA-201ENST00000324288 GNAT3A8MTJ3 354 aa9.03□□□□□ -0.96
CIITA-201ENST00000324288 PRIM1P49642 420 aaKnown RBP9.03□□□□□ -0.96
CIITA-201ENST00000324288 ZNF444Q8N0Y2 327 aaPredicted RBP9.03□□□□□ -0.96
CIITA-201ENST00000324288 WWC3Q9ULE0 1092 aa9.03□□□□□ -0.96
CIITA-201ENST00000324288 IFIT1P09914 478 aaKnown RBP9.03□□□□□ -0.96
CIITA-201ENST00000324288 RNASE9P60153 205 aaKnown RBP9.02□□□□□ -0.96
CIITA-201ENST00000324288 DNAJC25Q9H1X3 360 aa9.02□□□□□ -0.96
CIITA-201ENST00000324288 TLDC2A0PJX2 215 aa9.02□□□□□ -0.97
CIITA-201ENST00000324288 RAB11FIP3O75154 756 aa9.02□□□□□ -0.97
CIITA-201ENST00000324288 ANKRD30BQ9BXX2 1392 aa9.02□□□□□ -0.97
CIITA-201ENST00000324288 MYO9BQ13459 2157 aa9.02□□□□□ -0.97
CIITA-201ENST00000324288 CTAGE15A4D2H0 777 aa9.02□□□□□ -0.97
CIITA-201ENST00000324288 STX6O43752 255 aa9.02□□□□□ -0.97
CIITA-201ENST00000324288 CTAGE8P0CG41 777 aa9.02□□□□□ -0.97
CIITA-201ENST00000324288 FLIIQ13045 1269 aa9.02□□□□□ -0.97
CIITA-201ENST00000324288 CTAGE6Q86UF2 777 aa9.02□□□□□ -0.97
CIITA-201ENST00000324288 CTAGE4Q8IX94 777 aa9.02□□□□□ -0.97
CIITA-201ENST00000324288 DNAI2Q9GZS0 605 aa9.02□□□□□ -0.97
CIITA-201ENST00000324288 NOL3O60936 208 aaKnown RBP9.02□□□□□ -0.97
CIITA-201ENST00000324288 LZTFL1Q9NQ48 299 aa9.02□□□□□ -0.97
CIITA-201ENST00000324288 MYO18AQ92614 2054 aaKnown RBP9.02□□□□□ -0.97
CIITA-201ENST00000324288 ANKS4BQ8N8V4 417 aa9.02□□□□□ -0.97
CIITA-201ENST00000324288 TMOD3Q9NYL9 352 aa9.02□□□□□ -0.97
CIITA-201ENST00000324288 STARD3NLO95772 234 aa9.02□□□□□ -0.97
CIITA-201ENST00000324288 TBC1D9Q6ZT07 1266 aa9.02□□□□□ -0.97
CIITA-201ENST00000324288 AOPEPQ8N6M6 819 aa9.02□□□□□ -0.97
CIITA-201ENST00000324288 VIMP08670 466 aaKnown RBP9.02□□□□□ -0.97
CIITA-201ENST00000324288 UVSSAQ2YD98 709 aa9.02□□□□□ -0.97
CIITA-201ENST00000324288 ANAPC4Q9UJX5 808 aa9.02□□□□□ -0.97
CIITA-201ENST00000324288 SLC5A1P13866 664 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 IFIT5Q13325 482 aaKnown RBP9.01□□□□□ -0.97
CIITA-201ENST00000324288 SYT10Q6XYQ8 523 aa9.01□□□□□ -0.97
CIITA-201ENST00000324288 RASSF4Q9H2L5 321 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms