RNA–Protein interactions for RNA: ENST00000321117.9

DNMT3A-202, Transcript of DNA methyltransferase 3 alpha, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene DNMT3A, Length 4,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3A-202ENST00000321117 BRF1Q92994 677 aa14.93□□□□□ -0.02
DNMT3A-202ENST00000321117 CDK12Q9NYV4 1490 aaPredicted RBP14.93□□□□□ -0.02
DNMT3A-202ENST00000321117 HMGB1P09429 215 aaKnown RBP14.93□□□□□ -0.02
DNMT3A-202ENST00000321117 SAFBQ15424 915 aaKnown RBP eCLIP14.93□□□□□ -0.02
DNMT3A-202ENST00000321117 CCT2P78371 535 aaKnown RBP14.93□□□□□ -0.02
DNMT3A-202ENST00000321117 AMOTQ4VCS5 1084 aa14.93□□□□□ -0.02
DNMT3A-202ENST00000321117 ABCC3O15438 1527 aa14.93□□□□□ -0.02
DNMT3A-202ENST00000321117 NBPF7P0C2Y1 421 aaPredicted RBP14.92□□□□□ -0.02
DNMT3A-202ENST00000321117 CPSF1Q10570 1443 aaKnown RBP14.92□□□□□ -0.02
DNMT3A-202ENST00000321117 SKILP12757 684 aa14.92□□□□□ -0.02
DNMT3A-202ENST00000321117 MYD88Q99836 296 aa14.92□□□□□ -0.02
DNMT3A-202ENST00000321117 SMTNL1A8MU46 457 aa14.92□□□□□ -0.02
DNMT3A-202ENST00000321117 GSDMDP57764 484 aa14.92□□□□□ -0.02
DNMT3A-202ENST00000321117 AKAP17AQ02040 695 aaKnown RBP14.92□□□□□ -0.02
DNMT3A-202ENST00000321117 UBXN4Q92575 508 aa14.92□□□□□ -0.02
DNMT3A-202ENST00000321117 GTPBP4Q9BZE4 634 aaKnown RBP14.92□□□□□ -0.02
DNMT3A-202ENST00000321117 MYOM1P52179 1685 aa14.92□□□□□ -0.02
DNMT3A-202ENST00000321117 FAM177A1Q8N128 213 aaPredicted RBP14.92□□□□□ -0.02
DNMT3A-202ENST00000321117 KCNH5Q8NCM2 988 aa14.92□□□□□ -0.02
DNMT3A-202ENST00000321117 GRM8O00222 908 aa14.91□□□□□ -0.02
DNMT3A-202ENST00000321117 BCL2L12Q9HB09 334 aa14.91□□□□□ -0.02
DNMT3A-202ENST00000321117 SBNO1A3KN83 1393 aa14.91□□□□□ -0.02
DNMT3A-202ENST00000321117 KSR2Q6VAB6 950 aa14.91□□□□□ -0.02
DNMT3A-202ENST00000321117 LRRC2Q9BYS8 371 aa14.91□□□□□ -0.02
DNMT3A-202ENST00000321117 PPFIA3O75145 1194 aa14.9□□□□□ -0.02
DNMT3A-202ENST00000321117 TAF3Q5VWG9 929 aa14.9□□□□□ -0.02
DNMT3A-202ENST00000321117 RASEFQ8IZ41 740 aa14.9□□□□□ -0.02
DNMT3A-202ENST00000321117 MTMR6Q9Y217 621 aa14.9□□□□□ -0.02
DNMT3A-202ENST00000321117 CBFA2T2O43439 604 aa14.9□□□□□ -0.02
DNMT3A-202ENST00000321117 CTNNA3Q9UI47 895 aa14.9□□□□□ -0.02
DNMT3A-202ENST00000321117 ERICH4A6NGS2 130 aa14.9□□□□□ -0.02
DNMT3A-202ENST00000321117 PES1O00541 588 aaKnown RBP14.9□□□□□ -0.02
DNMT3A-202ENST00000321117 FKBP4Q02790 459 aaKnown RBP eCLIP14.9□□□□□ -0.02
DNMT3A-202ENST00000321117 CWF19L2Q2TBE0 894 aaKnown RBP14.9□□□□□ -0.02
DNMT3A-202ENST00000321117 TM6SF1Q9BZW5 370 aa14.9□□□□□ -0.02
DNMT3A-202ENST00000321117 CCDC158Q5M9N0 1113 aa14.89□□□□□ -0.03
DNMT3A-202ENST00000321117 RASSF8Q8NHQ8 419 aa14.89□□□□□ -0.03
DNMT3A-202ENST00000321117 CBX8Q9HC52 389 aa14.89□□□□□ -0.03
DNMT3A-202ENST00000321117 BABAM1Q9NWV8 329 aa14.89□□□□□ -0.03
DNMT3A-202ENST00000321117 NRXN1Q9ULB1 1477 aa14.89□□□□□ -0.03
DNMT3A-202ENST00000321117 PPRC1Q5VV67 1664 aaKnown RBP14.89□□□□□ -0.03
DNMT3A-202ENST00000321117 ARHGEF10O15013 1369 aa14.89□□□□□ -0.03
DNMT3A-202ENST00000321117 TATP17735 454 aaPredicted RBP14.89□□□□□ -0.03
DNMT3A-202ENST00000321117 CFAP100Q494V2 611 aa14.89□□□□□ -0.03
DNMT3A-202ENST00000321117 Q6ZUG5 572 aa14.89□□□□□ -0.03
DNMT3A-202ENST00000321117 C8orf76Q96K31 380 aa14.89□□□□□ -0.03
DNMT3A-202ENST00000321117 TNRQ92752 1358 aa14.89□□□□□ -0.03
DNMT3A-202ENST00000321117 IGSF3O75054 1194 aa14.89□□□□□ -0.03
DNMT3A-202ENST00000321117 PHF8Q9UPP1 1060 aa14.89□□□□□ -0.03
DNMT3A-202ENST00000321117 SNW1Q13573 536 aaKnown RBP14.89□□□□□ -0.03
DNMT3A-202ENST00000321117 CDC37L1Q7L3B6 337 aa14.89□□□□□ -0.03
DNMT3A-202ENST00000321117 TMC6Q7Z403 805 aa14.89□□□□□ -0.03
DNMT3A-202ENST00000321117 LINS1Q8NG48 757 aa14.89□□□□□ -0.03
DNMT3A-202ENST00000321117 FEZ1Q99689 392 aa14.89□□□□□ -0.03
DNMT3A-202ENST00000321117 ME3Q16798 604 aa14.88□□□□□ -0.03
DNMT3A-202ENST00000321117 FAM227BQ96M60 508 aa14.88□□□□□ -0.03
DNMT3A-202ENST00000321117 BIN1O00499 593 aa14.88□□□□□ -0.03
DNMT3A-202ENST00000321117 SLC27A2O14975 620 aa14.88□□□□□ -0.03
DNMT3A-202ENST00000321117 U2AF2P26368 475 aaKnown RBP eCLIP14.88□□□□□ -0.037e-6■□□□□ 9.6
DNMT3A-202ENST00000321117 TTC39AQ5SRH9 613 aa14.88□□□□□ -0.03
DNMT3A-202ENST00000321117 ATP2B1P20020 1258 aa14.88□□□□□ -0.03
DNMT3A-202ENST00000321117 HOXC9P31274 260 aa14.88□□□□□ -0.03
DNMT3A-202ENST00000321117 LSG1Q9H089 658 aaKnown RBP14.88□□□□□ -0.03
DNMT3A-202ENST00000321117 LMTK2Q8IWU2 1503 aa14.88□□□□□ -0.03
DNMT3A-202ENST00000321117 PTH1RQ03431 593 aa14.87□□□□□ -0.03
DNMT3A-202ENST00000321117 TSR1Q2NL82 804 aaKnown RBP14.87□□□□□ -0.03
DNMT3A-202ENST00000321117 TMCO3Q6UWJ1 677 aa14.87□□□□□ -0.03
DNMT3A-202ENST00000321117 KRT222Q8N1A0 295 aa14.87□□□□□ -0.03
DNMT3A-202ENST00000321117 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.87□□□□□ -0.03
DNMT3A-202ENST00000321117 V9GYY5 206 aaPredicted RBP14.87□□□□□ -0.03
DNMT3A-202ENST00000321117 SLC3A2P08195 630 aaKnown RBP14.87□□□□□ -0.03
DNMT3A-202ENST00000321117 ZNF75DP51815 510 aa14.87□□□□□ -0.03
DNMT3A-202ENST00000321117 DDX46Q7L014 1031 aaKnown RBP14.87□□□□□ -0.03
DNMT3A-202ENST00000321117 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.87□□□□□ -0.03
DNMT3A-202ENST00000321117 LEO1Q8WVC0 666 aaPredicted RBP14.87□□□□□ -0.03
DNMT3A-202ENST00000321117 CLSTN2Q9H4D0 955 aa14.87□□□□□ -0.03
DNMT3A-202ENST00000321117 CEP126Q9P2H0 1117 aa14.87□□□□□ -0.03
DNMT3A-202ENST00000321117 REREQ9P2R6 1566 aa14.87□□□□□ -0.03
DNMT3A-202ENST00000321117 PLEKHG3A1L390 1219 aa14.87□□□□□ -0.03
DNMT3A-202ENST00000321117 LIG1P18858 919 aa14.87□□□□□ -0.03
DNMT3A-202ENST00000321117 RPS6KB1P23443 525 aa14.87□□□□□ -0.03
DNMT3A-202ENST00000321117 IMMTQ16891 758 aaKnown RBP14.86□□□□□ -0.03
DNMT3A-202ENST00000321117 CCDC69A6NI79 296 aa14.86□□□□□ -0.03
DNMT3A-202ENST00000321117 URI1O94763 535 aaPredicted RBP14.86□□□□□ -0.03
DNMT3A-202ENST00000321117 TTC6Q86TZ1 520 aa14.86□□□□□ -0.03
DNMT3A-202ENST00000321117 AOPEPQ8N6M6 819 aa14.86□□□□□ -0.03
DNMT3A-202ENST00000321117 ANKRD20A12PQ8NF67 263 aa14.86□□□□□ -0.03
DNMT3A-202ENST00000321117 YEATS2Q9ULM3 1422 aa14.86□□□□□ -0.03
DNMT3A-202ENST00000321117 INO80Q9ULG1 1556 aaPredicted RBP14.86□□□□□ -0.03
DNMT3A-202ENST00000321117 GOLIM4O00461 696 aa14.86□□□□□ -0.03
DNMT3A-202ENST00000321117 UBE3BQ7Z3V4 1068 aa14.86□□□□□ -0.03
DNMT3A-202ENST00000321117 PYCARDQ9ULZ3 195 aa14.86□□□□□ -0.03
DNMT3A-202ENST00000321117 HECW2Q9P2P5 1572 aa14.86□□□□□ -0.03
DNMT3A-202ENST00000321117 NEO1Q92859 1461 aa14.86□□□□□ -0.03
DNMT3A-202ENST00000321117 A0A087WZG4 1122 aa14.86□□□□□ -0.03
DNMT3A-202ENST00000321117 JARID2Q92833 1246 aaPredicted RBP14.86□□□□□ -0.03
DNMT3A-202ENST00000321117 OGFRQ9NZT2 677 aa14.86□□□□□ -0.03
DNMT3A-202ENST00000321117 ADGRB1O14514 1584 aa14.85□□□□□ -0.03
DNMT3A-202ENST00000321117 IFIT1P09914 478 aaKnown RBP14.85□□□□□ -0.03
DNMT3A-202ENST00000321117 IL17REQ8NFR9 667 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms