RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 PRDM10Q9NQV6 1147 aa12.5□□□□□ -0.41
COL3A1-202ENST00000317840 AOX1Q06278 1338 aa12.5□□□□□ -0.41
COL3A1-202ENST00000317840 LARGE1O95461 756 aa12.5□□□□□ -0.41
COL3A1-202ENST00000317840 TERF1P54274 439 aa12.5□□□□□ -0.41
COL3A1-202ENST00000317840 TAF7LQ5H9L4 462 aa12.5□□□□□ -0.41
COL3A1-202ENST00000317840 MAP3K11Q16584 847 aa12.49□□□□□ -0.41
COL3A1-202ENST00000317840 SPATA32Q96LK8 384 aa12.49□□□□□ -0.41
COL3A1-202ENST00000317840 ZRSR1Q15695 479 aaKnown RBP12.49□□□□□ -0.41
COL3A1-202ENST00000317840 FBXW7Q969H0 707 aa12.49□□□□□ -0.41
COL3A1-202ENST00000317840 EVI5LQ96CN4 794 aa12.49□□□□□ -0.41
COL3A1-202ENST00000317840 DDX11Q96FC9 970 aa12.49□□□□□ -0.41
COL3A1-202ENST00000317840 FAM227BQ96M60 508 aa12.49□□□□□ -0.41
COL3A1-202ENST00000317840 DNAJC2Q99543 621 aaKnown RBP12.49□□□□□ -0.41
COL3A1-202ENST00000317840 ADAMTS13Q76LX8 1427 aa12.49□□□□□ -0.41
COL3A1-202ENST00000317840 KDM4AO75164 1064 aa12.49□□□□□ -0.41
COL3A1-202ENST00000317840 KIF3AQ9Y496 699 aa12.49□□□□□ -0.41
COL3A1-202ENST00000317840 SALL3Q9BXA9 1300 aa12.48□□□□□ -0.41
COL3A1-202ENST00000317840 EIF4A1P60842 406 aaKnown RBP12.48□□□□□ -0.41
COL3A1-202ENST00000317840 GORABQ5T7V8 394 aa12.48□□□□□ -0.41
COL3A1-202ENST00000317840 ZNF592Q92610 1267 aa12.48□□□□□ -0.41
COL3A1-202ENST00000317840 ATP5J2-PTCD1G3V325 749 aa12.48□□□□□ -0.41
COL3A1-202ENST00000317840 AMOTQ4VCS5 1084 aa12.48□□□□□ -0.41
COL3A1-202ENST00000317840 BEND3Q5T5X7 828 aa12.48□□□□□ -0.41
COL3A1-202ENST00000317840 TTC41PQ6P2S7 1318 aa12.47□□□□□ -0.41
COL3A1-202ENST00000317840 OVOS2A0A0J9YW53 1432 aa12.47□□□□□ -0.41
COL3A1-202ENST00000317840 GOLGA6L19H0YKK7 550 aa12.47□□□□□ -0.41
COL3A1-202ENST00000317840 HIP1O00291 1037 aa12.47□□□□□ -0.41
COL3A1-202ENST00000317840 NMIQ13287 307 aaPredicted RBP12.47□□□□□ -0.41
COL3A1-202ENST00000317840 ME3Q16798 604 aa12.47□□□□□ -0.41
COL3A1-202ENST00000317840 VPS53Q5VIR6 699 aa12.47□□□□□ -0.41
COL3A1-202ENST00000317840 OVOS2Q6IE36 1432 aa12.47□□□□□ -0.41
COL3A1-202ENST00000317840 PTPRUQ92729 1446 aa12.47□□□□□ -0.41
COL3A1-202ENST00000317840 HYPKQ9NX55 129 aa12.47□□□□□ -0.41
COL3A1-202ENST00000317840 PPFIA3O75145 1194 aa12.47□□□□□ -0.41
COL3A1-202ENST00000317840 CREB3L3Q68CJ9 461 aa12.47□□□□□ -0.41
COL3A1-202ENST00000317840 KLHDC4Q8TBB5 520 aa12.47□□□□□ -0.41
COL3A1-202ENST00000317840 PIBF1Q8WXW3 757 aa12.47□□□□□ -0.41
COL3A1-202ENST00000317840 NEUROD6Q96NK8 337 aa12.47□□□□□ -0.41
COL3A1-202ENST00000317840 MTMR6Q9Y217 621 aa12.47□□□□□ -0.41
COL3A1-202ENST00000317840 KNDC1Q76NI1 1749 aa12.47□□□□□ -0.41
COL3A1-202ENST00000317840 CCDC171Q6TFL3 1326 aa12.47□□□□□ -0.41
COL3A1-202ENST00000317840 DNAJC5Q9H3Z4 198 aa12.46□□□□□ -0.41
COL3A1-202ENST00000317840 DACT1Q9NYF0 836 aa12.46□□□□□ -0.41
COL3A1-202ENST00000317840 AGLP35573 1532 aa12.46□□□□□ -0.41
COL3A1-202ENST00000317840 BECN2A8MW95 431 aa12.46□□□□□ -0.41
COL3A1-202ENST00000317840 TMEM94Q12767 1356 aa12.46□□□□□ -0.41
COL3A1-202ENST00000317840 NPHP3Q7Z494 1330 aa12.46□□□□□ -0.41
COL3A1-202ENST00000317840 ANKRD1Q15327 319 aa12.46□□□□□ -0.42
COL3A1-202ENST00000317840 DLG5Q8TDM6 1919 aa12.45□□□□□ -0.42
COL3A1-202ENST00000317840 POLA2Q14181 598 aa12.45□□□□□ -0.42
COL3A1-202ENST00000317840 LUZP1Q86V48 1076 aa12.45□□□□□ -0.42
COL3A1-202ENST00000317840 MYD88Q99836 296 aa12.45□□□□□ -0.42
COL3A1-202ENST00000317840 KSR2Q6VAB6 950 aa12.45□□□□□ -0.42
COL3A1-202ENST00000317840 CDC37L1Q7L3B6 337 aa12.45□□□□□ -0.42
COL3A1-202ENST00000317840 AXIN2Q9Y2T1 843 aa12.45□□□□□ -0.42
COL3A1-202ENST00000317840 GRM8O00222 908 aa12.45□□□□□ -0.42
COL3A1-202ENST00000317840 EPB41L2O43491 1005 aaKnown RBP12.45□□□□□ -0.42
COL3A1-202ENST00000317840 TTC14Q96N46 770 aa12.45□□□□□ -0.42
COL3A1-202ENST00000317840 USP31Q70CQ4 1352 aa12.45□□□□□ -0.42
COL3A1-202ENST00000317840 PRAMEF22A3QJZ6 481 aa12.44□□□□□ -0.42
COL3A1-202ENST00000317840 PROSER3Q2NL68 480 aa12.44□□□□□ -0.42
COL3A1-202ENST00000317840 AKAP4Q5JQC9 854 aa12.44□□□□□ -0.42
COL3A1-202ENST00000317840 PRIMPOLQ96LW4 560 aa12.44□□□□□ -0.42
COL3A1-202ENST00000317840 LRRC2Q9BYS8 371 aa12.44□□□□□ -0.42
COL3A1-202ENST00000317840 SCAND2PQ9GZW5 306 aaPredicted RBP12.44□□□□□ -0.42
COL3A1-202ENST00000317840 TPM3P06753 285 aa12.44□□□□□ -0.42
COL3A1-202ENST00000317840 CBX1P83916 185 aa12.44□□□□□ -0.42
COL3A1-202ENST00000317840 EDC3Q96F86 508 aaKnown RBP12.44□□□□□ -0.42
COL3A1-202ENST00000317840 BICC1Q9H694 974 aaKnown RBP12.44□□□□□ -0.42
COL3A1-202ENST00000317840 TPCN1Q9ULQ1 816 aa12.44□□□□□ -0.42
COL3A1-202ENST00000317840 IFNL2Q8IZJ0 200 aa12.44□□□□□ -0.42
COL3A1-202ENST00000317840 FAM200AQ8TCP9 573 aa12.44□□□□□ -0.42
COL3A1-202ENST00000317840 ZBTB3Q9H5J0 574 aa12.44□□□□□ -0.42
COL3A1-202ENST00000317840 BABAM1Q9NWV8 329 aa12.44□□□□□ -0.42
COL3A1-202ENST00000317840 RNMTO43148 476 aaKnown RBP12.43□□□□□ -0.42
COL3A1-202ENST00000317840 ANO6Q4KMQ2 910 aa12.43□□□□□ -0.42
COL3A1-202ENST00000317840 EAF2Q96CJ1 260 aaPredicted RBP12.43□□□□□ -0.42
COL3A1-202ENST00000317840 C16orf45Q96MC5 204 aaPredicted RBP12.43□□□□□ -0.42
COL3A1-202ENST00000317840 NDUFB9Q9Y6M9 179 aa12.43□□□□□ -0.42
COL3A1-202ENST00000317840 KDRP35968 1356 aa12.43□□□□□ -0.42
COL3A1-202ENST00000317840 RPAP1Q9BWH6 1393 aaPredicted RBP12.43□□□□□ -0.42
COL3A1-202ENST00000317840 NPHP4O75161 1426 aaPredicted RBP12.43□□□□□ -0.42
COL3A1-202ENST00000317840 PTGS1P23219 599 aa12.43□□□□□ -0.42
COL3A1-202ENST00000317840 TYRO3Q06418 890 aa12.43□□□□□ -0.42
COL3A1-202ENST00000317840 CCDC186Q7Z3E2 898 aa12.43□□□□□ -0.42
COL3A1-202ENST00000317840 TTC6Q86TZ1 520 aa12.43□□□□□ -0.42
COL3A1-202ENST00000317840 LIG1P18858 919 aa12.43□□□□□ -0.42
COL3A1-202ENST00000317840 LARP1Q6PKG0 1096 aaKnown RBP12.43□□□□□ -0.42
COL3A1-202ENST00000317840 MYRIPQ8NFW9 859 aa12.43□□□□□ -0.42
COL3A1-202ENST00000317840 ZSWIM6Q9HCJ5 1215 aa12.43□□□□□ -0.42
COL3A1-202ENST00000317840 SLC27A2O14975 620 aa12.42□□□□□ -0.42
COL3A1-202ENST00000317840 ALDH1L1O75891 902 aa12.42□□□□□ -0.42
COL3A1-202ENST00000317840 ZNF165P49910 485 aa12.42□□□□□ -0.42
COL3A1-202ENST00000317840 COPS6Q7L5N1 327 aa12.42□□□□□ -0.42
COL3A1-202ENST00000317840 LINS1Q8NG48 757 aa12.42□□□□□ -0.42
COL3A1-202ENST00000317840 SUCLG2Q96I99 432 aa12.42□□□□□ -0.42
COL3A1-202ENST00000317840 A0A0D9SFI3 127 aa12.42□□□□□ -0.42
COL3A1-202ENST00000317840 SF3A1Q15459 793 aaKnown RBP12.42□□□□□ -0.42
COL3A1-202ENST00000317840 TPD52L1Q16890 204 aaPredicted RBP12.41□□□□□ -0.42
COL3A1-202ENST00000317840 TMEM87AQ8NBN3 555 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms