RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 PA2G4Q9UQ80 394 aaKnown RBP22.75■■□□□ 1.23
RTN4-201ENST00000317610 MAP3K2Q9Y2U5 619 aa22.75■■□□□ 1.23
RTN4-201ENST00000317610 HEG1Q9ULI3 1381 aa22.75■■□□□ 1.23
RTN4-201ENST00000317610 RGPD2P0DJD1 1756 aa22.74■■□□□ 1.23
RTN4-201ENST00000317610 NCAPD2Q15021 1401 aa22.74■■□□□ 1.23
RTN4-201ENST00000317610 PDCP20941 246 aa22.74■■□□□ 1.23
RTN4-201ENST00000317610 TEFQ10587 303 aa22.74■■□□□ 1.23
RTN4-201ENST00000317610 LARP1BQ659C4 914 aaKnown RBP22.74■■□□□ 1.23
RTN4-201ENST00000317610 AACSQ86V21 672 aa22.74■■□□□ 1.23
RTN4-201ENST00000317610 FAM200AQ8TCP9 573 aa22.74■■□□□ 1.23
RTN4-201ENST00000317610 UTYO14607 1347 aa22.74■■□□□ 1.23
RTN4-201ENST00000317610 SLC27A2O14975 620 aa22.74■■□□□ 1.23
RTN4-201ENST00000317610 NPHP4O75161 1426 aaPredicted RBP22.73■■□□□ 1.23
RTN4-201ENST00000317610 GOLGA6L6A8MZA4 724 aa22.73■■□□□ 1.23
RTN4-201ENST00000317610 NMIQ13287 307 aaPredicted RBP22.73■■□□□ 1.23
RTN4-201ENST00000317610 FAM227BQ96M60 508 aa22.73■■□□□ 1.23
RTN4-201ENST00000317610 JCADQ9P266 1359 aa22.73■■□□□ 1.23
RTN4-201ENST00000317610 ANKRD1Q15327 319 aa22.73■■□□□ 1.23
RTN4-201ENST00000317610 MAP3K11Q16584 847 aa22.73■■□□□ 1.23
RTN4-201ENST00000317610 CDC37L1Q7L3B6 337 aa22.73■■□□□ 1.23
RTN4-201ENST00000317610 PYCARDQ9ULZ3 195 aa22.73■■□□□ 1.23
RTN4-201ENST00000317610 MED23Q9ULK4 1368 aa22.72■■□□□ 1.23
RTN4-201ENST00000317610 CEBPAP49715 358 aaPredicted RBP22.72■■□□□ 1.23
RTN4-201ENST00000317610 NUP62CLQ9H1M0 184 aa22.72■■□□□ 1.23
RTN4-201ENST00000317610 KIF3AQ9Y496 699 aa22.72■■□□□ 1.23
RTN4-201ENST00000317610 MRVI1Q9Y6F6 885 aa22.72■■□□□ 1.23
RTN4-201ENST00000317610 DTNBO60941 627 aa22.71■■□□□ 1.23
RTN4-201ENST00000317610 SASH1O94885 1247 aa22.71■■□□□ 1.23
RTN4-201ENST00000317610 PLCB2Q00722 1185 aa22.71■■□□□ 1.23
RTN4-201ENST00000317610 JARID2Q92833 1246 aaPredicted RBP22.71■■□□□ 1.23
RTN4-201ENST00000317610 ZBTB7CA1YPR0 619 aa22.7■■□□□ 1.22
RTN4-201ENST00000317610 GIGYF1O75420 1035 aaPredicted RBP22.7■■□□□ 1.22
RTN4-201ENST00000317610 KCNA6P17658 529 aa22.7■■□□□ 1.22
RTN4-201ENST00000317610 LIG1P18858 919 aa22.7■■□□□ 1.22
RTN4-201ENST00000317610 TYRO3Q06418 890 aa22.7■■□□□ 1.22
RTN4-201ENST00000317610 ZNF530Q6P9A1 599 aaPredicted RBP22.7■■□□□ 1.22
RTN4-201ENST00000317610 DDX54Q8TDD1 881 aaKnown RBP22.7■■□□□ 1.22
RTN4-201ENST00000317610 EAF2Q96CJ1 260 aaPredicted RBP22.7■■□□□ 1.22
RTN4-201ENST00000317610 KAZALD1Q96I82 304 aa22.7■■□□□ 1.22
RTN4-201ENST00000317610 MRC1P22897 1456 aa22.7■■□□□ 1.22
RTN4-201ENST00000317610 RPS6KB1P23443 525 aa22.7■■□□□ 1.22
RTN4-201ENST00000317610 KCNJ4P48050 445 aa22.7■■□□□ 1.22
RTN4-201ENST00000317610 PROSER3Q2NL68 480 aa22.7■■□□□ 1.22
RTN4-201ENST00000317610 TSGA10IPQ3SY00 556 aa22.7■■□□□ 1.22
RTN4-201ENST00000317610 PLEKHO1Q53GL0 409 aaPredicted RBP22.7■■□□□ 1.22
RTN4-201ENST00000317610 RBM43Q6ZSC3 357 aaKnown RBP22.7■■□□□ 1.22
RTN4-201ENST00000317610 SIPA1L3O60292 1781 aaPredicted RBP22.69■■□□□ 1.22
RTN4-201ENST00000317610 RNF20Q5VTR2 975 aa22.69■■□□□ 1.22
RTN4-201ENST00000317610 BLOC1S2Q6QNY1 142 aa22.69■■□□□ 1.22
RTN4-201ENST00000317610 LINS1Q8NG48 757 aa22.69■■□□□ 1.22
RTN4-201ENST00000317610 SCAND2PQ9GZW5 306 aaPredicted RBP22.69■■□□□ 1.22
RTN4-201ENST00000317610 PRDM4Q9UKN5 801 aa22.69■■□□□ 1.22
RTN4-201ENST00000317610 RNMTO43148 476 aaKnown RBP22.69■■□□□ 1.22
RTN4-201ENST00000317610 COL9A3Q14050 684 aaPredicted RBP22.69■■□□□ 1.22
RTN4-201ENST00000317610 CWF19L2Q2TBE0 894 aaKnown RBP22.69■■□□□ 1.22
RTN4-201ENST00000317610 TSC1Q92574 1164 aa22.69■■□□□ 1.22
RTN4-201ENST00000317610 SUCLG2Q96I99 432 aa22.69■■□□□ 1.22
RTN4-201ENST00000317610 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.69■■□□□ 1.22
RTN4-201ENST00000317610 A0A0D9SFI3 127 aa22.68■■□□□ 1.22
RTN4-201ENST00000317610 GRM8O00222 908 aa22.68■■□□□ 1.22
RTN4-201ENST00000317610 TOB2Q14106 344 aaPredicted RBP22.68■■□□□ 1.22
RTN4-201ENST00000317610 AMOTQ4VCS5 1084 aa22.68■■□□□ 1.22
RTN4-201ENST00000317610 MPRIPQ6WCQ1 1025 aa22.68■■□□□ 1.22
RTN4-201ENST00000317610 PXDNQ92626 1479 aa22.67■■□□□ 1.22
RTN4-201ENST00000317610 G3BP1Q13283 466 aaKnown RBP eCLIP22.67■■□□□ 1.223e-16■□□□□ 9.4
RTN4-201ENST00000317610 THEMISQ8N1K5 641 aaPredicted RBP22.67■■□□□ 1.22
RTN4-201ENST00000317610 DDX19AQ9NUU7 478 aaKnown RBP22.67■■□□□ 1.22
RTN4-201ENST00000317610 HMG20BQ9P0W2 317 aa22.67■■□□□ 1.22
RTN4-201ENST00000317610 PHF8Q9UPP1 1060 aa22.67■■□□□ 1.22
RTN4-201ENST00000317610 NPHP3Q7Z494 1330 aa22.67■■□□□ 1.22
RTN4-201ENST00000317610 SETD1BQ9UPS6 1966 aaKnown RBP22.67■■□□□ 1.22
RTN4-201ENST00000317610 FERMT3Q86UX7 667 aa22.66■■□□□ 1.22
RTN4-201ENST00000317610 SPC24Q8NBT2 197 aa22.66■■□□□ 1.22
RTN4-201ENST00000317610 BICC1Q9H694 974 aaKnown RBP22.66■■□□□ 1.22
RTN4-201ENST00000317610 FAM173BQ6P4H8 233 aa22.65■■□□□ 1.22
RTN4-201ENST00000317610 C14orf37Q86TY3 774 aa22.65■■□□□ 1.22
RTN4-201ENST00000317610 LMTK3Q96Q04 1460 aa22.65■■□□□ 1.22
RTN4-201ENST00000317610 CCDC8Q9H0W5 538 aaPredicted RBP22.65■■□□□ 1.22
RTN4-201ENST00000317610 BCL2L12Q9HB09 334 aa22.65■■□□□ 1.22
RTN4-201ENST00000317610 TNMDQ9H2S6 317 aa22.65■■□□□ 1.22
RTN4-201ENST00000317610 CLSTN2Q9H4D0 955 aa22.65■■□□□ 1.22
RTN4-201ENST00000317610 DACT1Q9NYF0 836 aa22.65■■□□□ 1.22
RTN4-201ENST00000317610 ADAMTS7Q9UKP4 1686 aa22.65■■□□□ 1.22
RTN4-201ENST00000317610 LARP1Q6PKG0 1096 aaKnown RBP22.64■■□□□ 1.22
RTN4-201ENST00000317610 KCNH5Q8NCM2 988 aa22.64■■□□□ 1.22
RTN4-201ENST00000317610 LEO1Q8WVC0 666 aaPredicted RBP22.64■■□□□ 1.22
RTN4-201ENST00000317610 SPATA32Q96LK8 384 aa22.64■■□□□ 1.22
RTN4-201ENST00000317610 FSD1Q9BTV5 496 aa22.64■■□□□ 1.22
RTN4-201ENST00000317610 CBX8Q9HC52 389 aa22.64■■□□□ 1.22
RTN4-201ENST00000317610 TLR7Q9NYK1 1049 aaKnown RBP22.64■■□□□ 1.22
RTN4-201ENST00000317610 CHAF1AQ13111 956 aaPredicted RBP22.64■■□□□ 1.21
RTN4-201ENST00000317610 CAMK4Q16566 473 aa22.64■■□□□ 1.21
RTN4-201ENST00000317610 USPL1Q5W0Q7 1092 aa22.64■■□□□ 1.21
RTN4-201ENST00000317610 LUZP1Q86V48 1076 aa22.64■■□□□ 1.21
RTN4-201ENST00000317610 TAF6LQ9Y6J9 622 aa22.64■■□□□ 1.21
RTN4-201ENST00000317610 PTGS1P23219 599 aa22.63■■□□□ 1.21
RTN4-201ENST00000317610 TDRD7Q8NHU6 1098 aaKnown RBP22.63■■□□□ 1.21
RTN4-201ENST00000317610 DNAJC5Q9H3Z4 198 aa22.63■■□□□ 1.21
RTN4-201ENST00000317610 CAMTA1Q9Y6Y1 1673 aa22.63■■□□□ 1.21
RTN4-201ENST00000317610 CTIFO43310 598 aaKnown RBP22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms