RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 ABTB2Q8N961 1025 aa9.74□□□□□ -0.85
CNOT4-201ENST00000315544 KCNQ3O43525 872 aa9.73□□□□□ -0.85
CNOT4-201ENST00000315544 LARGE1O95461 756 aa9.73□□□□□ -0.85
CNOT4-201ENST00000315544 RUFY3Q7L099 469 aa9.73□□□□□ -0.85
CNOT4-201ENST00000315544 KCND1Q9NSA2 647 aa9.73□□□□□ -0.85
CNOT4-201ENST00000315544 SPTLC3Q9NUV7 552 aa9.73□□□□□ -0.85
CNOT4-201ENST00000315544 CCDC88AQ3V6T2 1871 aa9.73□□□□□ -0.85
CNOT4-201ENST00000315544 NPM2Q86SE8 214 aaKnown RBP9.73□□□□□ -0.85
CNOT4-201ENST00000315544 NKX2-3Q8TAU0 364 aa9.73□□□□□ -0.85
CNOT4-201ENST00000315544 SMARCA5O60264 1052 aaPredicted RBP9.73□□□□□ -0.85
CNOT4-201ENST00000315544 HYPKQ9NX55 129 aa9.73□□□□□ -0.85
CNOT4-201ENST00000315544 CCDC171Q6TFL3 1326 aa9.72□□□□□ -0.85
CNOT4-201ENST00000315544 COG3Q96JB2 828 aa9.72□□□□□ -0.85
CNOT4-201ENST00000315544 LMOD3Q0VAK6 560 aa9.72□□□□□ -0.85
CNOT4-201ENST00000315544 RABEP1Q15276 862 aa9.72□□□□□ -0.85
CNOT4-201ENST00000315544 ZSCAN23Q3MJ62 389 aa9.72□□□□□ -0.85
CNOT4-201ENST00000315544 FLIIQ13045 1269 aa9.72□□□□□ -0.85
CNOT4-201ENST00000315544 PHAXQ9H814 394 aaKnown RBP9.72□□□□□ -0.85
CNOT4-201ENST00000315544 LGR6Q9HBX8 967 aa9.72□□□□□ -0.85
CNOT4-201ENST00000315544 NOL7Q9UMY1 257 aaKnown RBP9.72□□□□□ -0.85
CNOT4-201ENST00000315544 LOC285556D6RIA3 1793 aa9.72□□□□□ -0.85
CNOT4-201ENST00000315544 NBPF7P0C2Y1 421 aaPredicted RBP9.71□□□□□ -0.85
CNOT4-201ENST00000315544 MRE11P49959 708 aa9.71□□□□□ -0.85
CNOT4-201ENST00000315544 PROSER3Q2NL68 480 aa9.71□□□□□ -0.85
CNOT4-201ENST00000315544 XPCQ01831 940 aaPredicted RBP9.71□□□□□ -0.85
CNOT4-201ENST00000315544 ANKRD24Q8TF21 1146 aa9.71□□□□□ -0.85
CNOT4-201ENST00000315544 GIGYF1O75420 1035 aaPredicted RBP9.71□□□□□ -0.86
CNOT4-201ENST00000315544 NGDNQ8NEJ9 315 aaKnown RBP9.71□□□□□ -0.86
CNOT4-201ENST00000315544 KRT27Q7Z3Y8 459 aa9.7□□□□□ -0.86
CNOT4-201ENST00000315544 C8orf37Q96NL8 207 aa9.7□□□□□ -0.86
CNOT4-201ENST00000315544 ZSWIM6Q9HCJ5 1215 aa9.7□□□□□ -0.86
CNOT4-201ENST00000315544 PCDH11XQ9BZA7 1347 aa9.7□□□□□ -0.86
CNOT4-201ENST00000315544 PCDH11YQ9BZA8 1340 aa9.7□□□□□ -0.86
CNOT4-201ENST00000315544 CCT4P50991 539 aaKnown RBP9.7□□□□□ -0.86
CNOT4-201ENST00000315544 SNX14Q9Y5W7 946 aa9.7□□□□□ -0.86
CNOT4-201ENST00000315544 CYP27B1O15528 508 aa9.7□□□□□ -0.86
CNOT4-201ENST00000315544 TICAM2Q86XR7 235 aa9.7□□□□□ -0.86
CNOT4-201ENST00000315544 TMX3Q96JJ7 454 aa9.7□□□□□ -0.86
CNOT4-201ENST00000315544 PRAMEF22A3QJZ6 481 aa9.69□□□□□ -0.86
CNOT4-201ENST00000315544 FAM196AQ6ZSG2 479 aa9.69□□□□□ -0.86
CNOT4-201ENST00000315544 CNTNAP4Q9C0A0 1308 aa9.69□□□□□ -0.86
CNOT4-201ENST00000315544 MYH7BA7E2Y1 1941 aa9.69□□□□□ -0.86
CNOT4-201ENST00000315544 F6X3S4 739 aa9.69□□□□□ -0.86
CNOT4-201ENST00000315544 UBE2Q2Q8WVN8 375 aa9.69□□□□□ -0.86
CNOT4-201ENST00000315544 TM6SF1Q9BZW5 370 aa9.69□□□□□ -0.86
CNOT4-201ENST00000315544 SCN4AP35499 1836 aa9.69□□□□□ -0.86
CNOT4-201ENST00000315544 TOB2Q14106 344 aaPredicted RBP9.69□□□□□ -0.86
CNOT4-201ENST00000315544 RGS22Q8NE09 1264 aa9.69□□□□□ -0.86
CNOT4-201ENST00000315544 HSD3B7Q9H2F3 369 aa9.69□□□□□ -0.86
CNOT4-201ENST00000315544 ZNF710Q8N1W2 664 aa9.68□□□□□ -0.86
CNOT4-201ENST00000315544 KCNF1Q9H3M0 494 aa9.68□□□□□ -0.86
CNOT4-201ENST00000315544 MFAP1P55081 439 aaKnown RBP9.68□□□□□ -0.86
CNOT4-201ENST00000315544 MAP4K1Q92918 833 aa9.68□□□□□ -0.86
CNOT4-201ENST00000315544 U2SURPO15042 1029 aaKnown RBP9.68□□□□□ -0.86
CNOT4-201ENST00000315544 CWC22Q9HCG8 908 aaKnown RBP9.68□□□□□ -0.86
CNOT4-201ENST00000315544 PRDM4Q9UKN5 801 aa9.68□□□□□ -0.86
CNOT4-201ENST00000315544 DDX11L8A8MPP1 907 aa9.67□□□□□ -0.86
CNOT4-201ENST00000315544 IL2RBP14784 551 aa9.67□□□□□ -0.86
CNOT4-201ENST00000315544 SLC27A3Q5K4L6 730 aa9.67□□□□□ -0.86
CNOT4-201ENST00000315544 MIS18AQ9NYP9 233 aa9.67□□□□□ -0.86
CNOT4-201ENST00000315544 GNAT3A8MTJ3 354 aa9.67□□□□□ -0.86
CNOT4-201ENST00000315544 PHKG2P15735 406 aa9.67□□□□□ -0.86
CNOT4-201ENST00000315544 PTGER2P43116 358 aa9.67□□□□□ -0.86
CNOT4-201ENST00000315544 PRIM1P49642 420 aaKnown RBP9.67□□□□□ -0.86
CNOT4-201ENST00000315544 ANKRD45Q5TZF3 282 aa9.67□□□□□ -0.86
CNOT4-201ENST00000315544 NLRP6P59044 892 aa9.67□□□□□ -0.86
CNOT4-201ENST00000315544 ADCK5Q3MIX3 580 aa9.67□□□□□ -0.86
CNOT4-201ENST00000315544 SLKQ9H2G2 1235 aaPredicted RBP9.67□□□□□ -0.86
CNOT4-201ENST00000315544 TTC41PQ6P2S7 1318 aa9.67□□□□□ -0.86
CNOT4-201ENST00000315544 OFD1O75665 1012 aa9.66□□□□□ -0.86
CNOT4-201ENST00000315544 EPHA10Q5JZY3 1008 aa9.66□□□□□ -0.86
CNOT4-201ENST00000315544 ERVV-2B6SEH9 535 aa9.66□□□□□ -0.86
CNOT4-201ENST00000315544 SLC4A2P04920 1241 aa9.66□□□□□ -0.86
CNOT4-201ENST00000315544 FOXO4P98177 505 aa9.66□□□□□ -0.86
CNOT4-201ENST00000315544 PTH1RQ03431 593 aa9.66□□□□□ -0.86
CNOT4-201ENST00000315544 NBPF3Q9H094 633 aa9.66□□□□□ -0.86
CNOT4-201ENST00000315544 IRS2Q9Y4H2 1338 aa9.66□□□□□ -0.86
CNOT4-201ENST00000315544 FANCGO15287 622 aa9.65□□□□□ -0.86
CNOT4-201ENST00000315544 CTDNEP1O95476 244 aa9.65□□□□□ -0.86
CNOT4-201ENST00000315544 LRSAM1Q6UWE0 723 aa9.65□□□□□ -0.86
CNOT4-201ENST00000315544 SLC4A9Q96Q91 983 aa9.65□□□□□ -0.86
CNOT4-201ENST00000315544 ELP1O95163 1332 aa9.65□□□□□ -0.86
CNOT4-201ENST00000315544 RNMTO43148 476 aaKnown RBP9.65□□□□□ -0.87
CNOT4-201ENST00000315544 GADD45BO75293 160 aaPredicted RBP9.65□□□□□ -0.87
CNOT4-201ENST00000315544 AKAP4Q5JQC9 854 aa9.65□□□□□ -0.87
CNOT4-201ENST00000315544 FTSJ3Q8IY81 847 aaKnown RBP9.65□□□□□ -0.87
CNOT4-201ENST00000315544 SMARCC2Q8TAQ2 1214 aa9.65□□□□□ -0.87
CNOT4-201ENST00000315544 TAF7Q15545 349 aaPredicted RBP9.64□□□□□ -0.87
CNOT4-201ENST00000315544 RC3H1Q5TC82 1133 aaKnown RBP9.64□□□□□ -0.87
CNOT4-201ENST00000315544 ATG9AQ7Z3C6 839 aa9.64□□□□□ -0.87
CNOT4-201ENST00000315544 COL1A1P02452 1464 aaPredicted RBP9.64□□□□□ -0.87
CNOT4-201ENST00000315544 MX1P20591 662 aa9.64□□□□□ -0.87
CNOT4-201ENST00000315544 TACC3Q9Y6A5 838 aa9.64□□□□□ -0.87
CNOT4-201ENST00000315544 ERC2O15083 957 aa9.64□□□□□ -0.87
CNOT4-201ENST00000315544 VSIG10Q8N0Z9 540 aa9.64□□□□□ -0.87
CNOT4-201ENST00000315544 MTMR6Q9Y217 621 aa9.64□□□□□ -0.87
CNOT4-201ENST00000315544 PARP14Q460N5 1801 aa9.63□□□□□ -0.87
CNOT4-201ENST00000315544 BECN1Q14457 450 aa9.63□□□□□ -0.87
CNOT4-201ENST00000315544 PTF1AQ7RTS3 328 aa9.63□□□□□ -0.87
CNOT4-201ENST00000315544 C14orf37Q86TY3 774 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms