RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SEC63Q9UGP8 760 aaKnown RBP19.96■□□□□ 0.79
SYNPO-201ENST00000307662 DESP17661 470 aa19.96■□□□□ 0.79
SYNPO-201ENST00000307662 SMAP1Q8IYB5 467 aaPredicted RBP19.96■□□□□ 0.79
SYNPO-201ENST00000307662 C14orf93Q9H972 538 aaKnown RBP19.96■□□□□ 0.79
SYNPO-201ENST00000307662 ARHGAP45Q92619 1136 aa19.95■□□□□ 0.78
SYNPO-201ENST00000307662 MYD88Q99836 296 aa19.95■□□□□ 0.78
SYNPO-201ENST00000307662 OGFRQ9NZT2 677 aa19.95■□□□□ 0.78
SYNPO-201ENST00000307662 ORC3Q9UBD5 711 aaPredicted RBP19.95■□□□□ 0.78
SYNPO-201ENST00000307662 TSHZ3Q63HK5 1081 aa19.95■□□□□ 0.78
SYNPO-201ENST00000307662 PYM1Q9BRP8 204 aaKnown RBP19.95■□□□□ 0.78
SYNPO-201ENST00000307662 MINDY4BA8MYZ0 360 aa19.95■□□□□ 0.78
SYNPO-201ENST00000307662 KIF20AO95235 890 aa19.95■□□□□ 0.78
SYNPO-201ENST00000307662 F13A1P00488 732 aa19.95■□□□□ 0.78
SYNPO-201ENST00000307662 MCM6Q14566 821 aa19.95■□□□□ 0.78
SYNPO-201ENST00000307662 FAM114A1Q8IWE2 563 aa19.95■□□□□ 0.78
SYNPO-201ENST00000307662 CCDC82Q8N4S0 544 aa19.95■□□□□ 0.78
SYNPO-201ENST00000307662 FEZ1Q99689 392 aa19.95■□□□□ 0.78
SYNPO-201ENST00000307662 RAB34Q9BZG1 259 aa19.95■□□□□ 0.78
SYNPO-201ENST00000307662 IGHMBP2P38935 993 aaKnown RBP19.94■□□□□ 0.78
SYNPO-201ENST00000307662 IDI1Q13907 227 aa19.94■□□□□ 0.78
SYNPO-201ENST00000307662 NF2P35240 595 aa19.94■□□□□ 0.78
SYNPO-201ENST00000307662 EMILIN1Q9Y6C2 1016 aa19.94■□□□□ 0.78
SYNPO-201ENST00000307662 GPATCH8Q9UKJ3 1502 aaKnown RBP19.94■□□□□ 0.78
SYNPO-201ENST00000307662 IFIT3O14879 490 aaKnown RBP19.94■□□□□ 0.78
SYNPO-201ENST00000307662 WASLO00401 505 aaPredicted RBP19.94■□□□□ 0.78
SYNPO-201ENST00000307662 IARSP41252 1262 aaKnown RBP19.94■□□□□ 0.78
SYNPO-201ENST00000307662 PAF1Q8N7H5 531 aa19.94■□□□□ 0.78
SYNPO-201ENST00000307662 DNAJC25Q9H1X3 360 aa19.94■□□□□ 0.78
SYNPO-201ENST00000307662 DACT1Q9NYF0 836 aa19.94■□□□□ 0.78
SYNPO-201ENST00000307662 MATR3P43243 847 aaKnown RBP eCLIP19.94■□□□□ 0.78
SYNPO-201ENST00000307662 ABCF2Q9UG63 623 aa19.94■□□□□ 0.78
SYNPO-201ENST00000307662 THOC2Q8NI27 1593 aaKnown RBP19.93■□□□□ 0.78
SYNPO-201ENST00000307662 NOS1P29475 1434 aa19.93■□□□□ 0.78
SYNPO-201ENST00000307662 HSPA4P34932 840 aa19.93■□□□□ 0.78
SYNPO-201ENST00000307662 SYKP43405 635 aa19.93■□□□□ 0.78
SYNPO-201ENST00000307662 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.93■□□□□ 0.78
SYNPO-201ENST00000307662 TMCO5BA8MYB1 307 aa19.93■□□□□ 0.78
SYNPO-201ENST00000307662 NOL12Q9UGY1 213 aaKnown RBP eCLIP19.93■□□□□ 0.78
SYNPO-201ENST00000307662 V9GYY5 206 aaPredicted RBP19.93■□□□□ 0.78
SYNPO-201ENST00000307662 NECAB1Q8N987 351 aa19.93■□□□□ 0.78
SYNPO-201ENST00000307662 ESYT1Q9BSJ8 1104 aa19.93■□□□□ 0.78
SYNPO-201ENST00000307662 RNF41Q9H4P4 317 aaPredicted RBP19.93■□□□□ 0.78
SYNPO-201ENST00000307662 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.93■□□□□ 0.78
SYNPO-201ENST00000307662 MAPKBP1O60336 1514 aa19.92■□□□□ 0.78
SYNPO-201ENST00000307662 N4BP3O15049 544 aa19.92■□□□□ 0.78
SYNPO-201ENST00000307662 TMEM266Q2M3C6 531 aa19.92■□□□□ 0.78
SYNPO-201ENST00000307662 UBE4AQ14139 1066 aa19.92■□□□□ 0.78
SYNPO-201ENST00000307662 GOLGA1Q92805 767 aa19.92■□□□□ 0.78
SYNPO-201ENST00000307662 ZNF287Q9HBT7 754 aa19.92■□□□□ 0.78
SYNPO-201ENST00000307662 PRDM11Q9NQV5 511 aa19.92■□□□□ 0.78
SYNPO-201ENST00000307662 MBIPQ9NS73 344 aa19.92■□□□□ 0.78
SYNPO-201ENST00000307662 CCDC194A0A1B0GVG4 234 aa19.92■□□□□ 0.78
SYNPO-201ENST00000307662 CAPN2P17655 700 aa19.92■□□□□ 0.78
SYNPO-201ENST00000307662 AOPEPQ8N6M6 819 aa19.92■□□□□ 0.78
SYNPO-201ENST00000307662 NLRP5P59047 1200 aa19.92■□□□□ 0.78
SYNPO-201ENST00000307662 CTAGE1Q96RT6 745 aa19.92■□□□□ 0.78
SYNPO-201ENST00000307662 TYRO3Q06418 890 aa19.91■□□□□ 0.78
SYNPO-201ENST00000307662 IQCA1Q86XH1 822 aa19.91■□□□□ 0.78
SYNPO-201ENST00000307662 MAP3K12Q12852 859 aa19.91■□□□□ 0.78
SYNPO-201ENST00000307662 KCNG4Q8TDN1 519 aa19.91■□□□□ 0.78
SYNPO-201ENST00000307662 MRPS27Q92552 414 aaKnown RBP19.91■□□□□ 0.78
SYNPO-201ENST00000307662 PTPRKQ15262 1439 aa19.91■□□□□ 0.78
SYNPO-201ENST00000307662 SYT1P21579 422 aa19.91■□□□□ 0.78
SYNPO-201ENST00000307662 RRAGDQ9NQL2 400 aaPredicted RBP19.91■□□□□ 0.78
SYNPO-201ENST00000307662 DNM1Q05193 864 aaKnown RBP19.9■□□□□ 0.78
SYNPO-201ENST00000307662 AMPD3Q01432 767 aa19.9■□□□□ 0.78
SYNPO-201ENST00000307662 PTGS1P23219 599 aa19.9■□□□□ 0.78
SYNPO-201ENST00000307662 PDE1AP54750 535 aa19.9■□□□□ 0.78
SYNPO-201ENST00000307662 PPP1R42Q7Z4L9 355 aa19.9■□□□□ 0.78
SYNPO-201ENST00000307662 CTNNBL1Q8WYA6 563 aaPredicted RBP19.9■□□□□ 0.78
SYNPO-201ENST00000307662 OPA1O60313 960 aa19.89■□□□□ 0.78
SYNPO-201ENST00000307662 RNF216Q9NWF9 866 aaPredicted RBP19.89■□□□□ 0.78
SYNPO-201ENST00000307662 UBA5Q9GZZ9 404 aa19.89■□□□□ 0.77
SYNPO-201ENST00000307662 UGGT2Q9NYU1 1516 aa19.89■□□□□ 0.77
SYNPO-201ENST00000307662 DBF4Q9UBU7 674 aaPredicted RBP19.89■□□□□ 0.77
SYNPO-201ENST00000307662 METAP2P50579 478 aaKnown RBP eCLIP19.89■□□□□ 0.77
SYNPO-201ENST00000307662 AMOTQ4VCS5 1084 aa19.89■□□□□ 0.77
SYNPO-201ENST00000307662 HYPKQ9NX55 129 aa19.89■□□□□ 0.77
SYNPO-201ENST00000307662 A0A087WZG4 1122 aa19.89■□□□□ 0.77
SYNPO-201ENST00000307662 GOLIM4O00461 696 aa19.89■□□□□ 0.77
SYNPO-201ENST00000307662 RANBP6O60518 1105 aaKnown RBP19.88■□□□□ 0.77
SYNPO-201ENST00000307662 TUBB4BP68371 445 aa19.88■□□□□ 0.77
SYNPO-201ENST00000307662 CCDC40Q4G0X9 1142 aa19.88■□□□□ 0.77
SYNPO-201ENST00000307662 CATIPQ7Z7H3 387 aa19.88■□□□□ 0.77
SYNPO-201ENST00000307662 RALGAPBQ86X10 1494 aa19.88■□□□□ 0.77
SYNPO-201ENST00000307662 CYLC1P35663 651 aaPredicted RBP19.88■□□□□ 0.77
SYNPO-201ENST00000307662 MICALL1Q8N3F8 863 aa19.88■□□□□ 0.77
SYNPO-201ENST00000307662 NOP2P46087 812 aaKnown RBP19.88■□□□□ 0.77
SYNPO-201ENST00000307662 BRF1Q92994 677 aa19.88■□□□□ 0.77
SYNPO-201ENST00000307662 ZC3H6P61129 1189 aaKnown RBP19.88■□□□□ 0.77
SYNPO-201ENST00000307662 PIP4K2BP78356 416 aa19.87■□□□□ 0.77
SYNPO-201ENST00000307662 HOOK3Q86VS8 718 aa19.87■□□□□ 0.77
SYNPO-201ENST00000307662 NCOA7Q8NI08 942 aa19.87■□□□□ 0.77
SYNPO-201ENST00000307662 MKNK2Q9HBH9 465 aa19.87■□□□□ 0.77
SYNPO-201ENST00000307662 DNAJC5BQ9UF47 199 aa19.87■□□□□ 0.77
SYNPO-201ENST00000307662 CTAGE9A4FU28 777 aa19.87■□□□□ 0.77
SYNPO-201ENST00000307662 TTC31Q49AM3 519 aaPredicted RBP19.87■□□□□ 0.77
SYNPO-201ENST00000307662 TMEM67Q5HYA8 995 aa19.87■□□□□ 0.77
SYNPO-201ENST00000307662 RMND1Q9NWS8 449 aa19.87■□□□□ 0.77
SYNPO-201ENST00000307662 ATP2C2O75185 946 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms