RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ALDH1L1O75891 902 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 ANO10Q9NW15 660 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 MINK1Q8N4C8 1332 aaPredicted RBP7.44□□□□□ -1.22
VPS35-201ENST00000299138 F13A1P00488 732 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 PIP4K2AP48426 406 aaPredicted RBP7.44□□□□□ -1.22
VPS35-201ENST00000299138 OLFM4Q6UX06 510 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 FCHSD1Q86WN1 690 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 CCDC113Q9H0I3 377 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 MBIPQ9NS73 344 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 ADGRL3Q9HAR2 1447 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 HSPA4P34932 840 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 TRIM29Q14134 588 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 A2ML1A8K2U0 1454 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 COL3A1P02461 1466 aaPredicted RBP7.44□□□□□ -1.22
VPS35-201ENST00000299138 A6NNZ2 444 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 RAD21O60216 631 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 TUBB8Q3ZCM7 444 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 TIGD1Q96MW7 591 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 FMNL2Q96PY5 1086 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 DMRT2Q9Y5R5 561 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 MYOM1P52179 1685 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 MAP3K5Q99683 1374 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 SETSIPP0DME0 302 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 ADCY5O95622 1261 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 TMED8Q6PL24 325 aaPredicted RBP7.44□□□□□ -1.22
VPS35-201ENST00000299138 KIAA1524Q8TCG1 905 aa7.44□□□□□ -1.22
VPS35-201ENST00000299138 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.44□□□□□ -1.223e-9■□□□□ 9.5
VPS35-201ENST00000299138 ZSCAN12O43309 604 aa7.43□□□□□ -1.22
VPS35-201ENST00000299138 DDX58O95786 925 aaKnown RBP7.43□□□□□ -1.22
VPS35-201ENST00000299138 XPCQ01831 940 aaPredicted RBP7.43□□□□□ -1.22
VPS35-201ENST00000299138 NAP1L3Q99457 506 aaPredicted RBP7.43□□□□□ -1.22
VPS35-201ENST00000299138 UBE4AQ14139 1066 aa7.43□□□□□ -1.22
VPS35-201ENST00000299138 KIF2CQ99661 725 aa7.43□□□□□ -1.22
VPS35-201ENST00000299138 MCM3P25205 808 aa7.43□□□□□ -1.22
VPS35-201ENST00000299138 CPLX2Q6PUV4 134 aaKnown RBP7.43□□□□□ -1.22
VPS35-201ENST00000299138 HOMEZQ8IX15 550 aa7.43□□□□□ -1.22
VPS35-201ENST00000299138 LLPHQ9BRT6 129 aaKnown RBP7.43□□□□□ -1.22
VPS35-201ENST00000299138 LRRC7Q96NW7 1537 aa7.43□□□□□ -1.22
VPS35-201ENST00000299138 SARM1Q6SZW1 724 aa7.43□□□□□ -1.22
VPS35-201ENST00000299138 CCDC91Q7Z6B0 441 aa7.43□□□□□ -1.22
VPS35-201ENST00000299138 TXLNBQ8N3L3 684 aa7.43□□□□□ -1.22
VPS35-201ENST00000299138 SLC20A2Q08357 652 aa7.43□□□□□ -1.22
VPS35-201ENST00000299138 SLC4A10Q6U841 1118 aa7.43□□□□□ -1.22
VPS35-201ENST00000299138 PLEKHG2Q9H7P9 1386 aa7.43□□□□□ -1.22
VPS35-201ENST00000299138 TDRD7Q8NHU6 1098 aaKnown RBP7.42□□□□□ -1.22
VPS35-201ENST00000299138 TNMDQ9H2S6 317 aa7.42□□□□□ -1.22
VPS35-201ENST00000299138 RBM28Q9NW13 759 aaKnown RBP7.42□□□□□ -1.22
VPS35-201ENST00000299138 DACH1Q9UI36 760 aa7.42□□□□□ -1.22
VPS35-201ENST00000299138 KIF3CO14782 793 aa7.42□□□□□ -1.22
VPS35-201ENST00000299138 KINO60870 393 aaKnown RBP7.42□□□□□ -1.22
VPS35-201ENST00000299138 STAMBPO95630 424 aa7.42□□□□□ -1.22
VPS35-201ENST00000299138 SMARCE1Q969G3 411 aa7.42□□□□□ -1.22
VPS35-201ENST00000299138 POLKQ9UBT6 870 aa7.42□□□□□ -1.22
VPS35-201ENST00000299138 ZC3H13Q5T200 1668 aaKnown RBP7.42□□□□□ -1.22
VPS35-201ENST00000299138 CTIFO43310 598 aaKnown RBP7.42□□□□□ -1.22
VPS35-201ENST00000299138 ATP2C2O75185 946 aa7.42□□□□□ -1.22
VPS35-201ENST00000299138 CHMLP26374 656 aa7.42□□□□□ -1.22
VPS35-201ENST00000299138 STX1AQ16623 288 aa7.42□□□□□ -1.22
VPS35-201ENST00000299138 EVI5LQ96CN4 794 aa7.42□□□□□ -1.22
VPS35-201ENST00000299138 ZMAT2Q96NC0 199 aaKnown RBP7.42□□□□□ -1.22
VPS35-201ENST00000299138 CDK19Q9BWU1 502 aa7.42□□□□□ -1.22
VPS35-201ENST00000299138 PPRC1Q5VV67 1664 aaKnown RBP7.42□□□□□ -1.22
VPS35-201ENST00000299138 IL13P35225 146 aa7.41□□□□□ -1.22
VPS35-201ENST00000299138 PTPN14Q15678 1187 aa7.41□□□□□ -1.22
VPS35-201ENST00000299138 SKAP1Q86WV1 359 aa7.41□□□□□ -1.22
VPS35-201ENST00000299138 CABP2Q9NPB3 220 aa7.41□□□□□ -1.22
VPS35-201ENST00000299138 KCND1Q9NSA2 647 aa7.41□□□□□ -1.22
VPS35-201ENST00000299138 KIAA1328Q86T90 577 aa7.41□□□□□ -1.22
VPS35-201ENST00000299138 TMEM63CQ9P1W3 806 aa7.41□□□□□ -1.22
VPS35-201ENST00000299138 PSDA5PKW4 1024 aaPredicted RBP7.41□□□□□ -1.22
VPS35-201ENST00000299138 PDE1CQ14123 709 aaPredicted RBP7.41□□□□□ -1.22
VPS35-201ENST00000299138 WASLO00401 505 aaPredicted RBP7.41□□□□□ -1.22
VPS35-201ENST00000299138 ZWINTO95229 277 aa7.41□□□□□ -1.22
VPS35-201ENST00000299138 SLU7O95391 586 aaKnown RBP7.41□□□□□ -1.22
VPS35-201ENST00000299138 IDI1Q13907 227 aa7.41□□□□□ -1.22
VPS35-201ENST00000299138 PPP4R3BQ5MIZ7 849 aa7.41□□□□□ -1.22
VPS35-201ENST00000299138 SYNE3Q6ZMZ3 975 aa7.41□□□□□ -1.22
VPS35-201ENST00000299138 PDRG1Q9NUG6 133 aa7.41□□□□□ -1.22
VPS35-201ENST00000299138 IVLP07476 585 aa7.41□□□□□ -1.22
VPS35-201ENST00000299138 ERBB4Q15303 1308 aa7.4□□□□□ -1.22
VPS35-201ENST00000299138 GIGYF2Q6Y7W6 1299 aaKnown RBP7.4□□□□□ -1.22
VPS35-201ENST00000299138 PRAM1Q96QH2 718 aa7.4□□□□□ -1.22
VPS35-201ENST00000299138 ZBTB12Q9Y330 459 aaPredicted RBP7.4□□□□□ -1.22
VPS35-201ENST00000299138 MIPOL1Q8TD10 442 aa7.4□□□□□ -1.22
VPS35-201ENST00000299138 FEZ2Q9UHY8 353 aaPredicted RBP7.4□□□□□ -1.22
VPS35-201ENST00000299138 TSPYL4Q9UJ04 414 aa7.4□□□□□ -1.22
VPS35-201ENST00000299138 FLT4P35916 1363 aa7.4□□□□□ -1.22
VPS35-201ENST00000299138 SGSM2O43147 1006 aa7.4□□□□□ -1.22
VPS35-201ENST00000299138 IFIT2P09913 472 aaKnown RBP7.4□□□□□ -1.22
VPS35-201ENST00000299138 RFC1P35251 1148 aaPredicted RBP7.4□□□□□ -1.22
VPS35-201ENST00000299138 SMC1AQ14683 1233 aaKnown RBP7.4□□□□□ -1.22
VPS35-201ENST00000299138 BLOC1S2Q6QNY1 142 aa7.4□□□□□ -1.22
VPS35-201ENST00000299138 TCHPQ9BT92 498 aa7.4□□□□□ -1.22
VPS35-201ENST00000299138 ECHDC1Q9NTX5 307 aa7.4□□□□□ -1.22
VPS35-201ENST00000299138 USP42Q9H9J4 1324 aaKnown RBP7.4□□□□□ -1.22
VPS35-201ENST00000299138 PLEKHG1Q9ULL1 1385 aa7.4□□□□□ -1.22
VPS35-201ENST00000299138 FBXO31Q5XUX0 539 aaPredicted RBP7.4□□□□□ -1.23
VPS35-201ENST00000299138 NAA16Q6N069 864 aaPredicted RBP7.4□□□□□ -1.23
VPS35-201ENST00000299138 SSH3Q8TE77 659 aa7.4□□□□□ -1.23
VPS35-201ENST00000299138 NUP133Q8WUM0 1156 aa7.4□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms