RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 CEP152O94986 1710 aa11.38□□□□□ -0.59
COL6A3-201ENST00000295550 CABP4P57796 275 aa11.38□□□□□ -0.59
COL6A3-201ENST00000295550 MSL1Q68DK7 614 aa11.38□□□□□ -0.59
COL6A3-201ENST00000295550 AK9Q5TCS8 1911 aa11.38□□□□□ -0.59
COL6A3-201ENST00000295550 CAVIN2O95810 425 aa11.38□□□□□ -0.59
COL6A3-201ENST00000295550 DNA2P51530 1060 aa11.38□□□□□ -0.59
COL6A3-201ENST00000295550 CCDC83Q8IWF9 413 aa11.38□□□□□ -0.59
COL6A3-201ENST00000295550 BBXQ8WY36 941 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-201ENST00000295550 CEP131Q9UPN4 1083 aa11.38□□□□□ -0.59
COL6A3-201ENST00000295550 CLGNO14967 610 aa11.38□□□□□ -0.59
COL6A3-201ENST00000295550 SEPT6Q14141 434 aa11.38□□□□□ -0.59
COL6A3-201ENST00000295550 URI1O94763 535 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-201ENST00000295550 KRT222Q8N1A0 295 aa11.38□□□□□ -0.59
COL6A3-201ENST00000295550 ANKRD44Q8N8A2 993 aa11.38□□□□□ -0.59
COL6A3-201ENST00000295550 U3KPZ7 1027 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-201ENST00000295550 PTPRTO14522 1441 aa11.38□□□□□ -0.59
COL6A3-201ENST00000295550 STX6O43752 255 aa11.38□□□□□ -0.59
COL6A3-201ENST00000295550 HMGB1P09429 215 aaKnown RBP11.38□□□□□ -0.59
COL6A3-201ENST00000295550 TRIM21P19474 475 aaKnown RBP11.38□□□□□ -0.59
COL6A3-201ENST00000295550 UVSSAQ2YD98 709 aa11.38□□□□□ -0.59
COL6A3-201ENST00000295550 TAOK3Q9H2K8 898 aa11.38□□□□□ -0.59
COL6A3-201ENST00000295550 ZBTB40Q9NUA8 1239 aa11.38□□□□□ -0.59
COL6A3-201ENST00000295550 UHRF1BP1LA0JNW5 1464 aa11.38□□□□□ -0.59
COL6A3-201ENST00000295550 WASF1Q92558 559 aa11.37□□□□□ -0.59
COL6A3-201ENST00000295550 CARD14Q9BXL6 1004 aa11.37□□□□□ -0.59
COL6A3-201ENST00000295550 TTC21AQ8NDW8 1320 aa11.37□□□□□ -0.59
COL6A3-201ENST00000295550 F6X3S4 739 aa11.37□□□□□ -0.59
COL6A3-201ENST00000295550 SDSP20132 328 aa11.37□□□□□ -0.59
COL6A3-201ENST00000295550 UBE2HP62256 183 aa11.37□□□□□ -0.59
COL6A3-201ENST00000295550 EVI5LQ96CN4 794 aa11.37□□□□□ -0.59
COL6A3-201ENST00000295550 DDX23Q9BUQ8 820 aaKnown RBP11.37□□□□□ -0.59
COL6A3-201ENST00000295550 IVLP07476 585 aa11.37□□□□□ -0.59
COL6A3-201ENST00000295550 MYL6BP14649 208 aa11.37□□□□□ -0.59
COL6A3-201ENST00000295550 HLTFQ14527 1009 aaKnown RBP eCLIP11.37□□□□□ -0.59
COL6A3-201ENST00000295550 HS1BP3Q53T59 392 aa11.37□□□□□ -0.59
COL6A3-201ENST00000295550 FKBP15Q5T1M5 1219 aa11.37□□□□□ -0.59
COL6A3-201ENST00000295550 LARP1Q6PKG0 1096 aaKnown RBP11.37□□□□□ -0.59
COL6A3-201ENST00000295550 SBNO2Q9Y2G9 1366 aa11.37□□□□□ -0.59
COL6A3-201ENST00000295550 MACROD2A1Z1Q3 448 aa11.37□□□□□ -0.59
COL6A3-201ENST00000295550 KLHL10Q6JEL2 608 aa11.37□□□□□ -0.59
COL6A3-201ENST00000295550 LRSAM1Q6UWE0 723 aa11.37□□□□□ -0.59
COL6A3-201ENST00000295550 ANKS4BQ8N8V4 417 aa11.37□□□□□ -0.59
COL6A3-201ENST00000295550 NEMFO60524 1076 aa11.37□□□□□ -0.59
COL6A3-201ENST00000295550 CTAGE5O15320 804 aa11.37□□□□□ -0.59
COL6A3-201ENST00000295550 HMG20BQ9P0W2 317 aa11.37□□□□□ -0.59
COL6A3-201ENST00000295550 ATP10AO60312 1499 aa11.36□□□□□ -0.59
COL6A3-201ENST00000295550 MSH6P52701 1360 aa11.36□□□□□ -0.59
COL6A3-201ENST00000295550 QRICH2Q9H0J4 1663 aa11.36□□□□□ -0.59
COL6A3-201ENST00000295550 DAAM2Q86T65 1068 aa11.36□□□□□ -0.59
COL6A3-201ENST00000295550 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.36□□□□□ -0.59
COL6A3-201ENST00000295550 TMX1Q9H3N1 280 aa11.36□□□□□ -0.59
COL6A3-201ENST00000295550 FAM83GA6ND36 823 aa11.36□□□□□ -0.59
COL6A3-201ENST00000295550 DDX19AQ9NUU7 478 aaKnown RBP11.36□□□□□ -0.59
COL6A3-201ENST00000295550 TRMT1Q9NXH9 659 aaKnown RBP11.36□□□□□ -0.59
COL6A3-201ENST00000295550 EDC4Q6P2E9 1401 aaKnown RBP11.36□□□□□ -0.59
COL6A3-201ENST00000295550 SOGA3Q5TF21 947 aa11.36□□□□□ -0.59
COL6A3-201ENST00000295550 LIG1P18858 919 aa11.36□□□□□ -0.59
COL6A3-201ENST00000295550 UBAC1Q9BSL1 405 aa11.36□□□□□ -0.59
COL6A3-201ENST00000295550 ANO10Q9NW15 660 aa11.36□□□□□ -0.59
COL6A3-201ENST00000295550 DBF4Q9UBU7 674 aaPredicted RBP11.36□□□□□ -0.59
COL6A3-201ENST00000295550 STX1AQ16623 288 aa11.36□□□□□ -0.59
COL6A3-201ENST00000295550 MAGI2Q86UL8 1455 aa11.36□□□□□ -0.59
COL6A3-201ENST00000295550 GSDMDP57764 484 aa11.35□□□□□ -0.59
COL6A3-201ENST00000295550 GOLGA4Q13439 2230 aaKnown RBP11.35□□□□□ -0.59
COL6A3-201ENST00000295550 MADDQ8WXG6 1647 aa11.35□□□□□ -0.59
COL6A3-201ENST00000295550 NAA15Q9BXJ9 866 aaKnown RBP11.35□□□□□ -0.59
COL6A3-201ENST00000295550 ECHDC1Q9NTX5 307 aa11.35□□□□□ -0.59
COL6A3-201ENST00000295550 SERPINA10Q9UK55 444 aa11.35□□□□□ -0.59
COL6A3-201ENST00000295550 SPECC1Q5M775 1068 aa11.35□□□□□ -0.59
COL6A3-201ENST00000295550 WDR66Q8TBY9 1149 aa11.35□□□□□ -0.59
COL6A3-201ENST00000295550 CCDC160A6NGH7 325 aa11.35□□□□□ -0.59
COL6A3-201ENST00000295550 SNW1Q13573 536 aaKnown RBP11.35□□□□□ -0.59
COL6A3-201ENST00000295550 CNNM1Q9NRU3 951 aa11.35□□□□□ -0.59
COL6A3-201ENST00000295550 CEP135Q66GS9 1140 aa11.35□□□□□ -0.59
COL6A3-201ENST00000295550 ZNF526Q8TF50 670 aaPredicted RBP11.35□□□□□ -0.59
COL6A3-201ENST00000295550 PDE1AP54750 535 aa11.34□□□□□ -0.59
COL6A3-201ENST00000295550 FBXO31Q5XUX0 539 aaPredicted RBP11.34□□□□□ -0.59
COL6A3-201ENST00000295550 ZFYVE16Q7Z3T8 1539 aa11.34□□□□□ -0.59
COL6A3-201ENST00000295550 FSD2A1L4K1 749 aa11.34□□□□□ -0.59
COL6A3-201ENST00000295550 TNRQ92752 1358 aa11.34□□□□□ -0.59
COL6A3-201ENST00000295550 PAFAH1B1P43034 410 aa11.34□□□□□ -0.59
COL6A3-201ENST00000295550 TSG101Q99816 390 aa11.34□□□□□ -0.59
COL6A3-201ENST00000295550 TMCO5BA8MYB1 307 aa11.34□□□□□ -0.59
COL6A3-201ENST00000295550 GJB2P29033 226 aa11.34□□□□□ -0.59
COL6A3-201ENST00000295550 ERVK-7P63135 1459 aa11.34□□□□□ -0.59
COL6A3-201ENST00000295550 ANKLE2Q86XL3 938 aa11.34□□□□□ -0.59
COL6A3-201ENST00000295550 NAP1L3Q99457 506 aaPredicted RBP11.34□□□□□ -0.59
COL6A3-201ENST00000295550 NSRP1Q9H0G5 558 aaKnown RBP11.34□□□□□ -0.59
COL6A3-201ENST00000295550 TMX3Q96JJ7 454 aa11.34□□□□□ -0.59
COL6A3-201ENST00000295550 MAP3K4Q9Y6R4 1608 aa11.34□□□□□ -0.59
COL6A3-201ENST00000295550 FLT4P35916 1363 aa11.34□□□□□ -0.59
COL6A3-201ENST00000295550 FGFR1OPO95684 399 aaKnown RBP11.34□□□□□ -0.59
COL6A3-201ENST00000295550 CACNA2D4Q7Z3S7 1137 aa11.34□□□□□ -0.59
COL6A3-201ENST00000295550 PRIMPOLQ96LW4 560 aa11.34□□□□□ -0.59
COL6A3-201ENST00000295550 USO1O60763 962 aaKnown RBP11.33□□□□□ -0.6
COL6A3-201ENST00000295550 YEATS4O95619 227 aa11.33□□□□□ -0.6
COL6A3-201ENST00000295550 CLTCL1P53675 1640 aa11.33□□□□□ -0.6
COL6A3-201ENST00000295550 HECW2Q9P2P5 1572 aa11.33□□□□□ -0.6
COL6A3-201ENST00000295550 ADCY5O95622 1261 aa11.33□□□□□ -0.6
COL6A3-201ENST00000295550 TDO2P48775 406 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms