RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 ATP6V1AP38606 617 aa20.65■□□□□ 0.9
CPSF4-201ENST00000292476 ITPK1Q13572 414 aa20.64■□□□□ 0.9
CPSF4-201ENST00000292476 CCDC191Q8NCU4 936 aa20.64■□□□□ 0.9
CPSF4-201ENST00000292476 SNX21Q969T3 373 aa20.64■□□□□ 0.9
CPSF4-201ENST00000292476 SLC4A9Q96Q91 983 aa20.64■□□□□ 0.9
CPSF4-201ENST00000292476 TFCP2L1Q9NZI6 479 aa20.64■□□□□ 0.9
CPSF4-201ENST00000292476 CICQ96RK0 1608 aaPredicted RBP20.64■□□□□ 0.89
CPSF4-201ENST00000292476 COL15A1P39059 1388 aa20.64■□□□□ 0.89
CPSF4-201ENST00000292476 RAB11FIP3O75154 756 aa20.64■□□□□ 0.89
CPSF4-201ENST00000292476 POLA2Q14181 598 aa20.64■□□□□ 0.89
CPSF4-201ENST00000292476 HSP90AB3PQ58FF7 597 aa20.64■□□□□ 0.89
CPSF4-201ENST00000292476 TTLL7Q6ZT98 887 aa20.64■□□□□ 0.89
CPSF4-201ENST00000292476 PPP1R42Q7Z4L9 355 aa20.64■□□□□ 0.89
CPSF4-201ENST00000292476 ARFGEF2Q9Y6D5 1785 aa20.64■□□□□ 0.89
CPSF4-201ENST00000292476 C4BP0C0L5 1744 aa20.63■□□□□ 0.89
CPSF4-201ENST00000292476 SRGAP3O43295 1099 aa20.63■□□□□ 0.89
CPSF4-201ENST00000292476 LINC00116Q8NCU8 138 aa20.63■□□□□ 0.89
CPSF4-201ENST00000292476 CWC25Q9NXE8 425 aaPredicted RBP20.63■□□□□ 0.89
CPSF4-201ENST00000292476 ZNF831Q5JPB2 1677 aa20.62■□□□□ 0.89
CPSF4-201ENST00000292476 PNMA6EA0A0J9YXQ4 647 aa20.62■□□□□ 0.89
CPSF4-201ENST00000292476 TRIM28Q13263 835 aaKnown RBP20.61■□□□□ 0.89
CPSF4-201ENST00000292476 HSCBQ8IWL3 235 aa20.61■□□□□ 0.89
CPSF4-201ENST00000292476 SLKQ9H2G2 1235 aaPredicted RBP20.61■□□□□ 0.89
CPSF4-201ENST00000292476 CCDC87Q9NVE4 849 aa20.61■□□□□ 0.89
CPSF4-201ENST00000292476 ZNF330Q9Y3S2 320 aaPredicted RBP20.61■□□□□ 0.89
CPSF4-201ENST00000292476 MAP3K15Q6ZN16 1313 aa20.61■□□□□ 0.89
CPSF4-201ENST00000292476 TJP1Q07157 1748 aa20.61■□□□□ 0.89
CPSF4-201ENST00000292476 ERVV-1B6SEH8 477 aa20.61■□□□□ 0.89
CPSF4-201ENST00000292476 ZBTB7AO95365 584 aa20.61■□□□□ 0.89
CPSF4-201ENST00000292476 TCIRG1Q13488 830 aa20.61■□□□□ 0.89
CPSF4-201ENST00000292476 LRRCC1Q9C099 1032 aa20.61■□□□□ 0.89
CPSF4-201ENST00000292476 ZBTB3Q9H5J0 574 aa20.61■□□□□ 0.89
CPSF4-201ENST00000292476 PNPLA7Q6ZV29 1317 aa20.6■□□□□ 0.89
CPSF4-201ENST00000292476 QSER1Q2KHR3 1735 aa20.6■□□□□ 0.89
CPSF4-201ENST00000292476 LRP5O75197 1615 aa20.6■□□□□ 0.89
CPSF4-201ENST00000292476 A0A087WZG4 1122 aa20.6■□□□□ 0.89
CPSF4-201ENST00000292476 CHMP5Q9NZZ3 219 aa20.6■□□□□ 0.89
CPSF4-201ENST00000292476 HMGB2P26583 209 aaKnown RBP20.59■□□□□ 0.89
CPSF4-201ENST00000292476 GIGYF2Q6Y7W6 1299 aaKnown RBP20.59■□□□□ 0.89
CPSF4-201ENST00000292476 AK7Q96M32 723 aa20.59■□□□□ 0.89
CPSF4-201ENST00000292476 ZBTB1Q9Y2K1 713 aa20.59■□□□□ 0.89
CPSF4-201ENST00000292476 SMIM5Q71RC9 77 aa20.58■□□□□ 0.89
CPSF4-201ENST00000292476 SUCLG2Q96I99 432 aa20.58■□□□□ 0.89
CPSF4-201ENST00000292476 ATP5J2-PTCD1G3V325 749 aa20.58■□□□□ 0.88
CPSF4-201ENST00000292476 H7C1W4 665 aa20.58■□□□□ 0.88
CPSF4-201ENST00000292476 SURF6O75683 361 aaKnown RBP20.58■□□□□ 0.88
CPSF4-201ENST00000292476 CRKLP46109 303 aaKnown RBP20.58■□□□□ 0.88
CPSF4-201ENST00000292476 ERC1Q8IUD2 1116 aa20.58■□□□□ 0.88
CPSF4-201ENST00000292476 ISCA1Q9BUE6 129 aa20.58■□□□□ 0.88
CPSF4-201ENST00000292476 COL5A3P25940 1745 aaPredicted RBP20.57■□□□□ 0.88
CPSF4-201ENST00000292476 CDC45O75419 566 aa20.57■□□□□ 0.88
CPSF4-201ENST00000292476 EIF5P55010 431 aaKnown RBP20.57■□□□□ 0.88
CPSF4-201ENST00000292476 AMIGO3Q86WK7 504 aa20.57■□□□□ 0.88
CPSF4-201ENST00000292476 ARXQ96QS3 562 aa20.57■□□□□ 0.88
CPSF4-201ENST00000292476 BICC1Q9H694 974 aaKnown RBP20.57■□□□□ 0.88
CPSF4-201ENST00000292476 ATF5Q9Y2D1 282 aaPredicted RBP20.57■□□□□ 0.88
CPSF4-201ENST00000292476 EXOC6BQ9Y2D4 811 aa20.57■□□□□ 0.88
CPSF4-201ENST00000292476 UBR3Q6ZT12 1888 aa20.56■□□□□ 0.88
CPSF4-201ENST00000292476 AFDNP55196 1824 aaKnown RBP20.56■□□□□ 0.88
CPSF4-201ENST00000292476 PHF14O94880 888 aa20.56■□□□□ 0.88
CPSF4-201ENST00000292476 INTS5Q6P9B9 1019 aaKnown RBP20.56■□□□□ 0.88
CPSF4-201ENST00000292476 DZIP3Q86Y13 1208 aaKnown RBP20.56■□□□□ 0.88
CPSF4-201ENST00000292476 KIF1BPQ96EK5 621 aa20.56■□□□□ 0.88
CPSF4-201ENST00000292476 SPON1Q9HCB6 807 aa20.56■□□□□ 0.88
CPSF4-201ENST00000292476 UBE3BQ7Z3V4 1068 aa20.55■□□□□ 0.88
CPSF4-201ENST00000292476 COL23A1Q86Y22 540 aaPredicted RBP20.55■□□□□ 0.88
CPSF4-201ENST00000292476 GNPATO15228 680 aa20.54■□□□□ 0.88
CPSF4-201ENST00000292476 TBC1D9Q6ZT07 1266 aa20.54■□□□□ 0.88
CPSF4-201ENST00000292476 CIZ1Q9ULV3 898 aaPredicted RBP20.54■□□□□ 0.88
CPSF4-201ENST00000292476 APBB1O00213 710 aa20.54■□□□□ 0.88
CPSF4-201ENST00000292476 RABL6Q3YEC7 729 aaPredicted RBP20.54■□□□□ 0.88
CPSF4-201ENST00000292476 PLEKHM2Q8IWE5 1019 aa20.54■□□□□ 0.88
CPSF4-201ENST00000292476 KAZALD1Q96I82 304 aa20.54■□□□□ 0.88
CPSF4-201ENST00000292476 CNTNAP4Q9C0A0 1308 aa20.53■□□□□ 0.88
CPSF4-201ENST00000292476 MYH14Q7Z406 1995 aaKnown RBP20.53■□□□□ 0.88
CPSF4-201ENST00000292476 RGL2O15211 777 aa20.53■□□□□ 0.88
CPSF4-201ENST00000292476 OS9Q13438 667 aaPredicted RBP20.53■□□□□ 0.88
CPSF4-201ENST00000292476 RC3H1Q5TC82 1133 aaKnown RBP20.53■□□□□ 0.88
CPSF4-201ENST00000292476 MTFR1LQ9H019 292 aa20.53■□□□□ 0.88
CPSF4-201ENST00000292476 DDIT3P35638 169 aa20.52■□□□□ 0.88
CPSF4-201ENST00000292476 CASP7P55210 303 aa20.52■□□□□ 0.88
CPSF4-201ENST00000292476 OSBPL3Q9H4L5 887 aa20.52■□□□□ 0.88
CPSF4-201ENST00000292476 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.51■□□□□ 0.87
CPSF4-201ENST00000292476 PCCAP05165 728 aaPredicted RBP20.51■□□□□ 0.87
CPSF4-201ENST00000292476 G3BP1Q13283 466 aaKnown RBP eCLIP20.51■□□□□ 0.87
CPSF4-201ENST00000292476 RHPN1Q8TCX5 695 aa20.51■□□□□ 0.87
CPSF4-201ENST00000292476 TTC22Q5TAA0 569 aa20.51■□□□□ 0.87
CPSF4-201ENST00000292476 ZBTB38Q8NAP3 1195 aaPredicted RBP20.51■□□□□ 0.87
CPSF4-201ENST00000292476 ZNF652Q9Y2D9 606 aa20.51■□□□□ 0.87
CPSF4-201ENST00000292476 SMARCA5O60264 1052 aaPredicted RBP20.5■□□□□ 0.87
CPSF4-201ENST00000292476 MCM4P33991 863 aa20.49■□□□□ 0.87
CPSF4-201ENST00000292476 PTGER2P43116 358 aa20.49■□□□□ 0.87
CPSF4-201ENST00000292476 FLAD1Q8NFF5 587 aa20.49■□□□□ 0.87
CPSF4-201ENST00000292476 SLC16A10Q8TF71 515 aa20.49■□□□□ 0.87
CPSF4-201ENST00000292476 KIF2CQ99661 725 aa20.49■□□□□ 0.87
CPSF4-201ENST00000292476 PPP1R1BQ9UD71 204 aaPredicted RBP20.49■□□□□ 0.87
CPSF4-201ENST00000292476 TBC1D2BQ9UPU7 963 aa20.49■□□□□ 0.87
CPSF4-201ENST00000292476 RTCBQ9Y3I0 505 aaKnown RBP20.49■□□□□ 0.87
CPSF4-201ENST00000292476 AOX1Q06278 1338 aa20.49■□□□□ 0.87
CPSF4-201ENST00000292476 HSP90B1P14625 803 aaKnown RBP20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 126.9 ms