RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 H7C1W4 665 aa23.68■■□□□ 1.38
PDLIM3-202ENST00000284770 RWDD1Q9H446 243 aaPredicted RBP23.68■■□□□ 1.38
PDLIM3-202ENST00000284770 ANKRD36CQ5JPF3 1778 aa23.68■■□□□ 1.38
PDLIM3-202ENST00000284770 IGHDP01880 384 aa23.68■■□□□ 1.38
PDLIM3-202ENST00000284770 HDAC1Q13547 482 aaPredicted RBP23.68■■□□□ 1.38
PDLIM3-202ENST00000284770 CEP85Q6P2H3 762 aa23.68■■□□□ 1.38
PDLIM3-202ENST00000284770 SCN7AQ01118 1682 aa23.68■■□□□ 1.38
PDLIM3-202ENST00000284770 CASP7P55210 303 aa23.67■■□□□ 1.38
PDLIM3-202ENST00000284770 UBE3BQ7Z3V4 1068 aa23.67■■□□□ 1.38
PDLIM3-202ENST00000284770 ANKRD44Q8N8A2 993 aa23.67■■□□□ 1.38
PDLIM3-202ENST00000284770 UBN2Q6ZU65 1347 aa23.67■■□□□ 1.38
PDLIM3-202ENST00000284770 C4AP0C0L4 1744 aa23.66■■□□□ 1.38
PDLIM3-202ENST00000284770 PARP10Q53GL7 1025 aa23.66■■□□□ 1.38
PDLIM3-202ENST00000284770 CENPQQ7L2Z9 268 aaPredicted RBP23.66■■□□□ 1.38
PDLIM3-202ENST00000284770 SIRT2Q8IXJ6 389 aa23.66■■□□□ 1.38
PDLIM3-202ENST00000284770 NIP7Q9Y221 180 aaKnown RBP eCLIP23.66■■□□□ 1.38
PDLIM3-202ENST00000284770 ZBTB38Q8NAP3 1195 aaPredicted RBP23.65■■□□□ 1.38
PDLIM3-202ENST00000284770 FLAD1Q8NFF5 587 aa23.65■■□□□ 1.38
PDLIM3-202ENST00000284770 PCCAP05165 728 aaPredicted RBP23.65■■□□□ 1.38
PDLIM3-202ENST00000284770 JARID2Q92833 1246 aaPredicted RBP23.65■■□□□ 1.38
PDLIM3-202ENST00000284770 SUCLG2Q96I99 432 aa23.65■■□□□ 1.38
PDLIM3-202ENST00000284770 KAZALD1Q96I82 304 aa23.64■■□□□ 1.37
PDLIM3-202ENST00000284770 ATP8B2P98198 1209 aa23.63■■□□□ 1.37
PDLIM3-202ENST00000284770 SLC15A2Q16348 729 aa23.63■■□□□ 1.37
PDLIM3-202ENST00000284770 TBC1D9BQ66K14 1250 aa23.63■■□□□ 1.37
PDLIM3-202ENST00000284770 ANO8Q9HCE9 1232 aaPredicted RBP23.63■■□□□ 1.37
PDLIM3-202ENST00000284770 STK32BQ9NY57 414 aa23.63■■□□□ 1.37
PDLIM3-202ENST00000284770 TRMT112Q9UI30 125 aaKnown RBP23.63■■□□□ 1.37
PDLIM3-202ENST00000284770 RTL5Q5HYW3 569 aaPredicted RBP23.62■■□□□ 1.37
PDLIM3-202ENST00000284770 SUSD4Q5VX71 490 aa23.62■■□□□ 1.37
PDLIM3-202ENST00000284770 UPF1Q92900 1129 aaKnown RBP eCLIP23.62■■□□□ 1.37
PDLIM3-202ENST00000284770 FAM89AQ96GI7 184 aa23.62■■□□□ 1.37
PDLIM3-202ENST00000284770 PPP1R42Q7Z4L9 355 aa23.61■■□□□ 1.37
PDLIM3-202ENST00000284770 COL23A1Q86Y22 540 aaPredicted RBP23.61■■□□□ 1.37
PDLIM3-202ENST00000284770 UTP14AQ9BVJ6 771 aaKnown RBP23.61■■□□□ 1.37
PDLIM3-202ENST00000284770 BICC1Q9H694 974 aaKnown RBP23.61■■□□□ 1.37
PDLIM3-202ENST00000284770 PNPLA7Q6ZV29 1317 aa23.6■■□□□ 1.37
PDLIM3-202ENST00000284770 HMMRO75330 724 aa23.6■■□□□ 1.37
PDLIM3-202ENST00000284770 GYS1P13807 737 aa23.6■■□□□ 1.37
PDLIM3-202ENST00000284770 MTX1Q13505 466 aa23.6■■□□□ 1.37
PDLIM3-202ENST00000284770 SETDB2Q96T68 719 aa23.6■■□□□ 1.37
PDLIM3-202ENST00000284770 CDHR2Q9BYE9 1310 aa23.6■■□□□ 1.37
PDLIM3-202ENST00000284770 BICDL1Q6ZP65 573 aa23.6■■□□□ 1.37
PDLIM3-202ENST00000284770 PELP1Q8IZL8 1130 aaKnown RBP23.6■■□□□ 1.37
PDLIM3-202ENST00000284770 PNMA6EA0A0J9YXQ4 647 aa23.59■■□□□ 1.37
PDLIM3-202ENST00000284770 EPHA10Q5JZY3 1008 aa23.59■■□□□ 1.37
PDLIM3-202ENST00000284770 TUBGCP6Q96RT7 1819 aa23.58■■□□□ 1.37
PDLIM3-202ENST00000284770 SH3TC1Q8TE82 1336 aa23.58■■□□□ 1.36
PDLIM3-202ENST00000284770 NTSR2O95665 410 aa23.57■■□□□ 1.36
PDLIM3-202ENST00000284770 FOXO4P98177 505 aa23.57■■□□□ 1.36
PDLIM3-202ENST00000284770 RABL6Q3YEC7 729 aaPredicted RBP23.57■■□□□ 1.36
PDLIM3-202ENST00000284770 SYNE4Q8N205 404 aa23.57■■□□□ 1.36
PDLIM3-202ENST00000284770 SSH3Q8TE77 659 aa23.57■■□□□ 1.36
PDLIM3-202ENST00000284770 PLA2G12BQ9BX93 195 aa23.57■■□□□ 1.36
PDLIM3-202ENST00000284770 FAM177BA6PVY3 158 aa23.57■■□□□ 1.36
PDLIM3-202ENST00000284770 MSH5O43196 834 aa23.57■■□□□ 1.36
PDLIM3-202ENST00000284770 SRGAP3O43295 1099 aa23.57■■□□□ 1.36
PDLIM3-202ENST00000284770 POLA2Q14181 598 aa23.57■■□□□ 1.36
PDLIM3-202ENST00000284770 NFIXQ14938 502 aa23.56■■□□□ 1.36
PDLIM3-202ENST00000284770 IRS4O14654 1257 aaPredicted RBP23.55■■□□□ 1.36
PDLIM3-202ENST00000284770 SMC5Q8IY18 1101 aa23.55■■□□□ 1.36
PDLIM3-202ENST00000284770 GCC1Q96CN9 775 aa23.55■■□□□ 1.36
PDLIM3-202ENST00000284770 NYXQ9GZU5 481 aa23.55■■□□□ 1.36
PDLIM3-202ENST00000284770 DCTPP1Q9H773 170 aa23.55■■□□□ 1.36
PDLIM3-202ENST00000284770 NLGN1Q8N2Q7 840 aa23.54■■□□□ 1.36
PDLIM3-202ENST00000284770 CARMIL3Q8ND23 1372 aa23.54■■□□□ 1.36
PDLIM3-202ENST00000284770 TM4SF1P30408 202 aa23.53■■□□□ 1.36
PDLIM3-202ENST00000284770 LMBR1LQ6UX01 489 aa23.53■■□□□ 1.36
PDLIM3-202ENST00000284770 NBPF5PQ86XG9 351 aaPredicted RBP23.53■■□□□ 1.36
PDLIM3-202ENST00000284770 COL24A1Q17RW2 1714 aa23.53■■□□□ 1.36
PDLIM3-202ENST00000284770 HSP90B1P14625 803 aaKnown RBP23.52■■□□□ 1.36
PDLIM3-202ENST00000284770 TPTE2Q6XPS3 522 aa23.52■■□□□ 1.36
PDLIM3-202ENST00000284770 NUTM1Q86Y26 1132 aa23.52■■□□□ 1.36
PDLIM3-202ENST00000284770 QSER1Q2KHR3 1735 aa23.52■■□□□ 1.36
PDLIM3-202ENST00000284770 PDE8AO60658 829 aa23.52■■□□□ 1.36
PDLIM3-202ENST00000284770 CSF1RP07333 972 aa23.51■■□□□ 1.35
PDLIM3-202ENST00000284770 GTF2E1P29083 439 aaPredicted RBP23.5■■□□□ 1.35
PDLIM3-202ENST00000284770 ERFEQ4G0M1 354 aa23.5■■□□□ 1.35
PDLIM3-202ENST00000284770 HCLS1P14317 486 aaPredicted RBP23.5■■□□□ 1.35
PDLIM3-202ENST00000284770 SLC10A5Q5PT55 438 aa23.5■■□□□ 1.35
PDLIM3-202ENST00000284770 CTSWP56202 376 aa23.49■■□□□ 1.35
PDLIM3-202ENST00000284770 TTLL11Q8NHH1 800 aa23.49■■□□□ 1.35
PDLIM3-202ENST00000284770 CHMP3Q9Y3E7 222 aa23.48■■□□□ 1.35
PDLIM3-202ENST00000284770 SKAP1Q86WV1 359 aa23.47■■□□□ 1.35
PDLIM3-202ENST00000284770 SURF6O75683 361 aaKnown RBP23.47■■□□□ 1.35
PDLIM3-202ENST00000284770 SERPINB2P05120 415 aa23.47■■□□□ 1.35
PDLIM3-202ENST00000284770 RFX5P48382 616 aaPredicted RBP23.47■■□□□ 1.35
PDLIM3-202ENST00000284770 DDR1Q08345 913 aa23.47■■□□□ 1.35
PDLIM3-202ENST00000284770 ILDR2Q71H61 639 aa23.47■■□□□ 1.35
PDLIM3-202ENST00000284770 EXOC6BQ9Y2D4 811 aa23.47■■□□□ 1.35
PDLIM3-202ENST00000284770 NOP58Q9Y2X3 529 aaKnown RBP23.47■■□□□ 1.35
PDLIM3-202ENST00000284770 POLRMTO00411 1230 aaKnown RBP23.46■■□□□ 1.35
PDLIM3-202ENST00000284770 NUCB1Q02818 461 aa23.46■■□□□ 1.35
PDLIM3-202ENST00000284770 CNBD1Q8NA66 436 aa23.46■■□□□ 1.35
PDLIM3-202ENST00000284770 NPHP1O15259 732 aa23.45■■□□□ 1.34
PDLIM3-202ENST00000284770 COPRSQ9NQ92 184 aa23.45■■□□□ 1.34
PDLIM3-202ENST00000284770 PDZRN3Q9UPQ7 1066 aa23.45■■□□□ 1.34
PDLIM3-202ENST00000284770 PTPN12Q05209 780 aaKnown RBP23.45■■□□□ 1.34
PDLIM3-202ENST00000284770 CCDC57Q2TAC2 916 aa23.45■■□□□ 1.34
PDLIM3-202ENST00000284770 HSP90AB4PQ58FF6 505 aa23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms