RNA–Protein interactions for RNA: ENST00000278544.9

ACER3-201, Transcript of alkaline ceramidase 3, humanhuman

TSL 1 (best)

Gene ACER3, Length 3,500 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACER3-201ENST00000278544 SUSD4Q5VX71 490 aa16.47■□□□□ 0.23
ACER3-201ENST00000278544 FAM161AQ3B820 660 aa16.47■□□□□ 0.23
ACER3-201ENST00000278544 CCDC8Q9H0W5 538 aaPredicted RBP16.47■□□□□ 0.23
ACER3-201ENST00000278544 PROM2Q8N271 834 aa16.46■□□□□ 0.23
ACER3-201ENST00000278544 SSH3Q8TE77 659 aa16.46■□□□□ 0.23
ACER3-201ENST00000278544 ARHGEF1Q92888 912 aaKnown RBP16.46■□□□□ 0.23
ACER3-201ENST00000278544 COL15A1P39059 1388 aa16.46■□□□□ 0.23
ACER3-201ENST00000278544 UBR2Q8IWV8 1755 aa16.46■□□□□ 0.23
ACER3-201ENST00000278544 ZPR1O75312 459 aa16.46■□□□□ 0.23
ACER3-201ENST00000278544 CCDC191Q8NCU4 936 aa16.46■□□□□ 0.23
ACER3-201ENST00000278544 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.46■□□□□ 0.23
ACER3-201ENST00000278544 CAMTA2O94983 1202 aa16.46■□□□□ 0.23
ACER3-201ENST00000278544 RFC4P35249 363 aa16.46■□□□□ 0.23
ACER3-201ENST00000278544 TXNRD1Q16881 649 aa16.46■□□□□ 0.23
ACER3-201ENST00000278544 EN1Q05925 392 aaPredicted RBP16.45■□□□□ 0.22
ACER3-201ENST00000278544 G3BP1Q13283 466 aaKnown RBP eCLIP16.45■□□□□ 0.22
ACER3-201ENST00000278544 PUS3Q9BZE2 481 aaKnown RBP16.45■□□□□ 0.22
ACER3-201ENST00000278544 IRS4O14654 1257 aaPredicted RBP16.45■□□□□ 0.22
ACER3-201ENST00000278544 TAF7LQ5H9L4 462 aa16.45■□□□□ 0.22
ACER3-201ENST00000278544 RHPN1Q8TCX5 695 aa16.45■□□□□ 0.22
ACER3-201ENST00000278544 ISCA1Q9BUE6 129 aa16.45■□□□□ 0.22
ACER3-201ENST00000278544 DEFB132Q7Z7B7 95 aa16.45■□□□□ 0.22
ACER3-201ENST00000278544 TBC1D9BQ66K14 1250 aa16.44■□□□□ 0.22
ACER3-201ENST00000278544 PLEKHM2Q8IWE5 1019 aa16.44■□□□□ 0.22
ACER3-201ENST00000278544 TFCP2L1Q9NZI6 479 aa16.44■□□□□ 0.22
ACER3-201ENST00000278544 NDUFB9Q9Y6M9 179 aa16.44■□□□□ 0.22
ACER3-201ENST00000278544 BRWD3Q6RI45 1802 aa16.44■□□□□ 0.22
ACER3-201ENST00000278544 H7C1W4 665 aa16.44■□□□□ 0.22
ACER3-201ENST00000278544 C8orf34Q49A92 452 aa16.44■□□□□ 0.22
ACER3-201ENST00000278544 LRRC24Q50LG9 513 aa16.44■□□□□ 0.22
ACER3-201ENST00000278544 BACH2Q9BYV9 841 aa16.44■□□□□ 0.22
ACER3-201ENST00000278544 TRIM6-TRIM34B2RNG4 842 aa16.43■□□□□ 0.22
ACER3-201ENST00000278544 MSL1Q68DK7 614 aa16.43■□□□□ 0.22
ACER3-201ENST00000278544 RILPL2Q969X0 211 aa16.43■□□□□ 0.22
ACER3-201ENST00000278544 BTAF1O14981 1849 aa16.43■□□□□ 0.22
ACER3-201ENST00000278544 PAPPAQ13219 1627 aa16.43■□□□□ 0.22
ACER3-201ENST00000278544 FOXO4P98177 505 aa16.43■□□□□ 0.22
ACER3-201ENST00000278544 ILDR1Q86SU0 546 aaPredicted RBP16.43■□□□□ 0.22
ACER3-201ENST00000278544 HELBQ8NG08 1087 aaPredicted RBP16.43■□□□□ 0.22
ACER3-201ENST00000278544 THSD7AQ9UPZ6 1657 aa16.43■□□□□ 0.22
ACER3-201ENST00000278544 SNAP23O00161 211 aa16.42■□□□□ 0.22
ACER3-201ENST00000278544 MFAP1P55081 439 aaKnown RBP16.42■□□□□ 0.22
ACER3-201ENST00000278544 CASP7P55210 303 aa16.42■□□□□ 0.22
ACER3-201ENST00000278544 TRAPPC3LQ5T215 181 aa16.42■□□□□ 0.22
ACER3-201ENST00000278544 NEUROD6Q96NK8 337 aa16.42■□□□□ 0.22
ACER3-201ENST00000278544 GREM2Q9H772 168 aa16.42■□□□□ 0.22
ACER3-201ENST00000278544 AACSQ86V21 672 aa16.42■□□□□ 0.22
ACER3-201ENST00000278544 TLR7Q9NYK1 1049 aaKnown RBP16.42■□□□□ 0.22
ACER3-201ENST00000278544 PXDNLA1KZ92 1463 aa16.42■□□□□ 0.22
ACER3-201ENST00000278544 POLA2Q14181 598 aa16.42■□□□□ 0.22
ACER3-201ENST00000278544 SEC31BQ9NQW1 1179 aa16.41■□□□□ 0.22
ACER3-201ENST00000278544 SASH1O94885 1247 aa16.41■□□□□ 0.22
ACER3-201ENST00000278544 TFCP2Q12800 502 aa16.41■□□□□ 0.22
ACER3-201ENST00000278544 CCDC57Q2TAC2 916 aa16.41■□□□□ 0.22
ACER3-201ENST00000278544 RPS6KA4O75676 772 aa16.41■□□□□ 0.22
ACER3-201ENST00000278544 GSPT1P15170 499 aaKnown RBP16.41■□□□□ 0.22
ACER3-201ENST00000278544 PTPN12Q05209 780 aaKnown RBP16.41■□□□□ 0.22
ACER3-201ENST00000278544 ZBTB38Q8NAP3 1195 aaPredicted RBP16.41■□□□□ 0.22
ACER3-201ENST00000278544 EZH2Q15910 746 aaKnown RBP16.4■□□□□ 0.22
ACER3-201ENST00000278544 BCL2L12Q9HB09 334 aa16.4■□□□□ 0.22
ACER3-201ENST00000278544 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.4■□□□□ 0.22
ACER3-201ENST00000278544 ERFEQ4G0M1 354 aa16.4■□□□□ 0.22
ACER3-201ENST00000278544 LAMB4A4D0S4 1761 aa16.4■□□□□ 0.22
ACER3-201ENST00000278544 ARFGEF2Q9Y6D5 1785 aa16.4■□□□□ 0.22
ACER3-201ENST00000278544 TIMM10P62072 90 aa16.4■□□□□ 0.22
ACER3-201ENST00000278544 AFDNP55196 1824 aaKnown RBP16.39■□□□□ 0.22
ACER3-201ENST00000278544 IBTKQ9P2D0 1353 aaPredicted RBP16.39■□□□□ 0.21
ACER3-201ENST00000278544 C3orf67Q6ZVT6 689 aa16.39■□□□□ 0.21
ACER3-201ENST00000278544 SLC51AQ86UW1 340 aa16.39■□□□□ 0.21
ACER3-201ENST00000278544 UTP14AQ9BVJ6 771 aaKnown RBP16.39■□□□□ 0.21
ACER3-201ENST00000278544 PDE1AP54750 535 aa16.39■□□□□ 0.21
ACER3-201ENST00000278544 ZNF827Q17R98 1081 aa16.39■□□□□ 0.21
ACER3-201ENST00000278544 HSP90AB3PQ58FF7 597 aa16.39■□□□□ 0.21
ACER3-201ENST00000278544 ZNF34Q8IZ26 560 aa16.39■□□□□ 0.21
ACER3-201ENST00000278544 TJP1Q07157 1748 aa16.39■□□□□ 0.21
ACER3-201ENST00000278544 IFIT2P09913 472 aaKnown RBP16.39■□□□□ 0.21
ACER3-201ENST00000278544 ITGA6P23229 1130 aa16.39■□□□□ 0.21
ACER3-201ENST00000278544 NBPF5PQ86XG9 351 aaPredicted RBP16.39■□□□□ 0.21
ACER3-201ENST00000278544 CLASRPQ8N2M8 674 aaKnown RBP16.39■□□□□ 0.21
ACER3-201ENST00000278544 EAF2Q96CJ1 260 aaPredicted RBP16.39■□□□□ 0.21
ACER3-201ENST00000278544 KIF1BPQ96EK5 621 aa16.39■□□□□ 0.21
ACER3-201ENST00000278544 SETDB2Q96T68 719 aa16.39■□□□□ 0.21
ACER3-201ENST00000278544 PCCAP05165 728 aaPredicted RBP16.38■□□□□ 0.21
ACER3-201ENST00000278544 MX1P20591 662 aa16.38■□□□□ 0.21
ACER3-201ENST00000278544 UTYO14607 1347 aa16.38■□□□□ 0.21
ACER3-201ENST00000278544 WWC3Q9ULE0 1092 aa16.38■□□□□ 0.21
ACER3-201ENST00000278544 ZNF652Q9Y2D9 606 aa16.38■□□□□ 0.21
ACER3-201ENST00000278544 ERVV-1B6SEH8 477 aa16.37■□□□□ 0.21
ACER3-201ENST00000278544 IFIT5Q13325 482 aaKnown RBP16.37■□□□□ 0.21
ACER3-201ENST00000278544 EDC3Q96F86 508 aaKnown RBP16.37■□□□□ 0.21
ACER3-201ENST00000278544 HDAC5Q9UQL6 1122 aa16.37■□□□□ 0.21
ACER3-201ENST00000278544 SH3TC1Q8TE82 1336 aa16.37■□□□□ 0.21
ACER3-201ENST00000278544 CNNM1Q9NRU3 951 aa16.37■□□□□ 0.21
ACER3-201ENST00000278544 TTLL11Q8NHH1 800 aa16.36■□□□□ 0.21
ACER3-201ENST00000278544 PDGFDQ9GZP0 370 aaPredicted RBP16.36■□□□□ 0.21
ACER3-201ENST00000278544 BOLA2Q9H3K6 86 aa16.36■□□□□ 0.21
ACER3-201ENST00000278544 RFX5P48382 616 aaPredicted RBP16.36■□□□□ 0.21
ACER3-201ENST00000278544 LDHAL6AQ6ZMR3 332 aa16.36■□□□□ 0.21
ACER3-201ENST00000278544 TAF5LO75529 589 aa16.36■□□□□ 0.21
ACER3-201ENST00000278544 SDSP20132 328 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms