RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 CLEC17AQ6ZS10 378 aa19.96■□□□□ 0.79
VPS54-201ENST00000272322 ZNF594Q96JF6 807 aaPredicted RBP19.96■□□□□ 0.79
VPS54-201ENST00000272322 ZNF830Q96NB3 372 aaPredicted RBP19.96■□□□□ 0.79
VPS54-201ENST00000272322 ALDH1L1O75891 902 aa19.96■□□□□ 0.79
VPS54-201ENST00000272322 TIMM10P62072 90 aa19.96■□□□□ 0.79
VPS54-201ENST00000272322 ME3Q16798 604 aa19.96■□□□□ 0.79
VPS54-201ENST00000272322 TOM1L2Q6ZVM7 507 aa19.96■□□□□ 0.79
VPS54-201ENST00000272322 TFIP11Q9UBB9 837 aaKnown RBP19.96■□□□□ 0.79
VPS54-201ENST00000272322 HOXB7P09629 217 aa19.95■□□□□ 0.78
VPS54-201ENST00000272322 FGD1P98174 961 aa19.95■□□□□ 0.78
VPS54-201ENST00000272322 CCDC173Q0VFZ6 552 aa19.95■□□□□ 0.78
VPS54-201ENST00000272322 LMBR1LQ6UX01 489 aa19.95■□□□□ 0.78
VPS54-201ENST00000272322 DBNDD2Q9BQY9 259 aa19.95■□□□□ 0.78
VPS54-201ENST00000272322 RGPD2P0DJD1 1756 aa19.95■□□□□ 0.78
VPS54-201ENST00000272322 CREB3L3Q68CJ9 461 aa19.95■□□□□ 0.78
VPS54-201ENST00000272322 DDX11Q96FC9 970 aa19.95■□□□□ 0.78
VPS54-201ENST00000272322 WDR33Q9C0J8 1336 aaKnown RBP19.94■□□□□ 0.78
VPS54-201ENST00000272322 ADGRL3Q9HAR2 1447 aa19.94■□□□□ 0.78
VPS54-201ENST00000272322 CEBPZQ03701 1054 aaKnown RBP19.94■□□□□ 0.78
VPS54-201ENST00000272322 TTLL7Q6ZT98 887 aa19.94■□□□□ 0.78
VPS54-201ENST00000272322 IFNL2Q8IZJ0 200 aa19.94■□□□□ 0.78
VPS54-201ENST00000272322 ZNF445P59923 1031 aa19.94■□□□□ 0.78
VPS54-201ENST00000272322 EVI5LQ96CN4 794 aa19.94■□□□□ 0.78
VPS54-201ENST00000272322 GIMAP6Q6P9H5 292 aa19.93■□□□□ 0.78
VPS54-201ENST00000272322 CAMK4Q16566 473 aa19.93■□□□□ 0.78
VPS54-201ENST00000272322 LRSAM1Q6UWE0 723 aa19.93■□□□□ 0.78
VPS54-201ENST00000272322 TPCN1Q9ULQ1 816 aa19.93■□□□□ 0.78
VPS54-201ENST00000272322 PRDM11Q9NQV5 511 aa19.93■□□□□ 0.78
VPS54-201ENST00000272322 CCDC171Q6TFL3 1326 aa19.92■□□□□ 0.78
VPS54-201ENST00000272322 TTC14Q96N46 770 aa19.92■□□□□ 0.78
VPS54-201ENST00000272322 SNRKQ9NRH2 765 aa19.92■□□□□ 0.78
VPS54-201ENST00000272322 CHST3Q7LGC8 479 aa19.92■□□□□ 0.78
VPS54-201ENST00000272322 ERC1Q8IUD2 1116 aa19.92■□□□□ 0.78
VPS54-201ENST00000272322 DBNLQ9UJU6 430 aaKnown RBP19.92■□□□□ 0.78
VPS54-201ENST00000272322 ISY1Q9ULR0 285 aaKnown RBP19.92■□□□□ 0.78
VPS54-201ENST00000272322 ZSCAN22P10073 491 aaPredicted RBP19.92■□□□□ 0.78
VPS54-201ENST00000272322 HCLS1P14317 486 aaPredicted RBP19.92■□□□□ 0.78
VPS54-201ENST00000272322 HSP90B1P14625 803 aaKnown RBP19.92■□□□□ 0.78
VPS54-201ENST00000272322 INTS4Q96HW7 963 aaKnown RBP19.92■□□□□ 0.78
VPS54-201ENST00000272322 NPHP4O75161 1426 aaPredicted RBP19.91■□□□□ 0.78
VPS54-201ENST00000272322 TTC41PQ6P2S7 1318 aa19.91■□□□□ 0.78
VPS54-201ENST00000272322 HSP90AB3PQ58FF7 597 aa19.91■□□□□ 0.78
VPS54-201ENST00000272322 LARP1BQ659C4 914 aaKnown RBP19.91■□□□□ 0.78
VPS54-201ENST00000272322 SNRPA1P09661 255 aaKnown RBP19.91■□□□□ 0.78
VPS54-201ENST00000272322 CHMP4AQ9BY43 222 aa19.91■□□□□ 0.78
VPS54-201ENST00000272322 USP25Q9UHP3 1055 aa19.9■□□□□ 0.78
VPS54-201ENST00000272322 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.9■□□□□ 0.78
VPS54-201ENST00000272322 KDM4AO75164 1064 aa19.9■□□□□ 0.78
VPS54-201ENST00000272322 METTL22Q9BUU2 404 aaPredicted RBP19.9■□□□□ 0.78
VPS54-201ENST00000272322 TMEM94Q12767 1356 aa19.9■□□□□ 0.78
VPS54-201ENST00000272322 SLC27A2O14975 620 aa19.89■□□□□ 0.78
VPS54-201ENST00000272322 MBD3O95983 291 aa19.89■□□□□ 0.78
VPS54-201ENST00000272322 TSPY26PQ9H489 355 aa19.89■□□□□ 0.78
VPS54-201ENST00000272322 LTN1O94822 1766 aa19.89■□□□□ 0.77
VPS54-201ENST00000272322 BLOC1S2Q6QNY1 142 aa19.89■□□□□ 0.77
VPS54-201ENST00000272322 AOX1Q06278 1338 aa19.89■□□□□ 0.77
VPS54-201ENST00000272322 GOLIM4O00461 696 aa19.89■□□□□ 0.77
VPS54-201ENST00000272322 A0A0G2JLW4 131 aa19.88■□□□□ 0.77
VPS54-201ENST00000272322 FMNL2Q96PY5 1086 aa19.88■□□□□ 0.77
VPS54-201ENST00000272322 RAB11FIP4Q86YS3 637 aa19.88■□□□□ 0.77
VPS54-201ENST00000272322 RPAP1Q9BWH6 1393 aaPredicted RBP19.88■□□□□ 0.77
VPS54-201ENST00000272322 F13A1P00488 732 aa19.88■□□□□ 0.77
VPS54-201ENST00000272322 MTX1Q13505 466 aa19.88■□□□□ 0.77
VPS54-201ENST00000272322 R3HCC1Q9Y3T6 440 aaKnown RBP19.88■□□□□ 0.77
VPS54-201ENST00000272322 JAK2O60674 1132 aa19.87■□□□□ 0.77
VPS54-201ENST00000272322 PTPN12Q05209 780 aaKnown RBP19.87■□□□□ 0.77
VPS54-201ENST00000272322 CDC37L1Q7L3B6 337 aa19.87■□□□□ 0.77
VPS54-201ENST00000272322 ZSCAN30Q86W11 494 aa19.87■□□□□ 0.77
VPS54-201ENST00000272322 NFAT5O94916 1531 aa19.87■□□□□ 0.77
VPS54-201ENST00000272322 ST3GAL1Q11201 340 aa19.87■□□□□ 0.77
VPS54-201ENST00000272322 NECTIN1Q15223 517 aa19.87■□□□□ 0.77
VPS54-201ENST00000272322 SYTL4Q96C24 671 aaPredicted RBP19.87■□□□□ 0.77
VPS54-201ENST00000272322 XRN1Q8IZH2 1706 aaKnown RBP19.86■□□□□ 0.77
VPS54-201ENST00000272322 C17orf53Q8N3J3 647 aaPredicted RBP19.86■□□□□ 0.77
VPS54-201ENST00000272322 FKBP4Q02790 459 aaKnown RBP eCLIP19.86■□□□□ 0.771e-12■■□□□ 14
VPS54-201ENST00000272322 FAM208AQ9UK61 1670 aaKnown RBP19.85■□□□□ 0.77
VPS54-201ENST00000272322 TCHHQ07283 1943 aa19.85■□□□□ 0.77
VPS54-201ENST00000272322 FAM177BA6PVY3 158 aa19.85■□□□□ 0.77
VPS54-201ENST00000272322 LRRC24Q50LG9 513 aa19.85■□□□□ 0.77
VPS54-201ENST00000272322 TNNI3KQ59H18 835 aa19.85■□□□□ 0.77
VPS54-201ENST00000272322 PUS3Q9BZE2 481 aaKnown RBP19.85■□□□□ 0.77
VPS54-201ENST00000272322 FPGT-TNNI3KV9GXZ4 949 aa19.85■□□□□ 0.77
VPS54-201ENST00000272322 GUCY1B3Q02153 619 aa19.85■□□□□ 0.77
VPS54-201ENST00000272322 VPS53Q5VIR6 699 aa19.85■□□□□ 0.77
VPS54-201ENST00000272322 SYNE4Q8N205 404 aa19.85■□□□□ 0.77
VPS54-201ENST00000272322 FBXW7Q969H0 707 aa19.85■□□□□ 0.77
VPS54-201ENST00000272322 NBPF26B4DH59 902 aa19.85■□□□□ 0.77
VPS54-201ENST00000272322 CCT2P78371 535 aaKnown RBP19.85■□□□□ 0.77
VPS54-201ENST00000272322 NBPF14Q5TI25 921 aa19.85■□□□□ 0.77
VPS54-201ENST00000272322 NBPF10Q6P3W6 841 aaKnown RBP19.85■□□□□ 0.77
VPS54-201ENST00000272322 CKAP2LQ8IYA6 745 aa19.85■□□□□ 0.77
VPS54-201ENST00000272322 NBPF15Q8N660 670 aa19.85■□□□□ 0.77
VPS54-201ENST00000272322 MTMR6Q9Y217 621 aa19.85■□□□□ 0.77
VPS54-201ENST00000272322 HDAC5Q9UQL6 1122 aa19.84■□□□□ 0.77
VPS54-201ENST00000272322 GPTP24298 496 aa19.84■□□□□ 0.77
VPS54-201ENST00000272322 EVA1CP58658 441 aa19.84■□□□□ 0.77
VPS54-201ENST00000272322 RBM10P98175 930 aaKnown RBP19.84■□□□□ 0.77
VPS54-201ENST00000272322 SYAP1Q96A49 352 aaPredicted RBP19.84■□□□□ 0.77
VPS54-201ENST00000272322 PPP1R9BQ96SB3 815 aa19.84■□□□□ 0.77
VPS54-201ENST00000272322 ZSWIM6Q9HCJ5 1215 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms