RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 JARID2Q92833 1246 aaPredicted RBP15.69■□□□□ 0.1
SPTLC1-201ENST00000262554 PALD1Q9ULE6 856 aa15.69■□□□□ 0.1
SPTLC1-201ENST00000262554 ITGB4P16144 1822 aa15.68■□□□□ 0.1
SPTLC1-201ENST00000262554 CASP7P55210 303 aa15.68■□□□□ 0.1
SPTLC1-201ENST00000262554 TTLL7Q6ZT98 887 aa15.68■□□□□ 0.1
SPTLC1-201ENST00000262554 KLHDC4Q8TBB5 520 aa15.68■□□□□ 0.1
SPTLC1-201ENST00000262554 IL25Q9H293 177 aa15.68■□□□□ 0.1
SPTLC1-201ENST00000262554 CWC25Q9NXE8 425 aaPredicted RBP15.68■□□□□ 0.1
SPTLC1-201ENST00000262554 PLCH1Q4KWH8 1693 aa15.68■□□□□ 0.1
SPTLC1-201ENST00000262554 RAD50Q92878 1312 aa15.68■□□□□ 0.1
SPTLC1-201ENST00000262554 H7C1W4 665 aa15.67■□□□□ 0.1
SPTLC1-201ENST00000262554 PTMSP20962 102 aa15.67■□□□□ 0.1
SPTLC1-201ENST00000262554 RFX5P48382 616 aaPredicted RBP15.67■□□□□ 0.1
SPTLC1-201ENST00000262554 CWC27Q6UX04 472 aaKnown RBP15.67■□□□□ 0.1
SPTLC1-201ENST00000262554 TEX13AQ9BXU3 409 aaPredicted RBP15.67■□□□□ 0.1
SPTLC1-201ENST00000262554 CCDC8Q9H0W5 538 aaPredicted RBP15.67■□□□□ 0.1
SPTLC1-201ENST00000262554 HIP1O00291 1037 aa15.67■□□□□ 0.1
SPTLC1-201ENST00000262554 NUCB2P80303 420 aa15.67■□□□□ 0.1
SPTLC1-201ENST00000262554 PTPN12Q05209 780 aaKnown RBP15.67■□□□□ 0.1
SPTLC1-201ENST00000262554 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.67■□□□□ 0.1
SPTLC1-201ENST00000262554 TJP1Q07157 1748 aa15.67■□□□□ 0.1
SPTLC1-201ENST00000262554 DISP2A7MBM2 1401 aa15.66■□□□□ 0.1
SPTLC1-201ENST00000262554 VSIG10Q8N0Z9 540 aa15.66■□□□□ 0.1
SPTLC1-201ENST00000262554 CCDC191Q8NCU4 936 aa15.66■□□□□ 0.1
SPTLC1-201ENST00000262554 LSG1Q9H089 658 aaKnown RBP15.66■□□□□ 0.1
SPTLC1-201ENST00000262554 COL16A1Q07092 1604 aaPredicted RBP15.66■□□□□ 0.1
SPTLC1-201ENST00000262554 TRAK2O60296 914 aa15.65■□□□□ 0.1
SPTLC1-201ENST00000262554 ZBTB3Q9H5J0 574 aa15.65■□□□□ 0.1
SPTLC1-201ENST00000262554 WNK3Q9BYP7 1800 aa15.65■□□□□ 0.1
SPTLC1-201ENST00000262554 SSFA2P28290 1259 aa15.65■□□□□ 0.1
SPTLC1-201ENST00000262554 LMBR1LQ6UX01 489 aa15.65■□□□□ 0.1
SPTLC1-201ENST00000262554 PIGBQ92521 554 aa15.65■□□□□ 0.1
SPTLC1-201ENST00000262554 TLR7Q9NYK1 1049 aaKnown RBP15.65■□□□□ 0.1
SPTLC1-201ENST00000262554 CLEC17AQ6ZS10 378 aa15.64■□□□□ 0.09
SPTLC1-201ENST00000262554 TMX3Q96JJ7 454 aa15.64■□□□□ 0.09
SPTLC1-201ENST00000262554 ASAP1Q9ULH1 1129 aa15.64■□□□□ 0.09
SPTLC1-201ENST00000262554 LRP6O75581 1613 aa15.64■□□□□ 0.09
SPTLC1-201ENST00000262554 FOXO4P98177 505 aa15.63■□□□□ 0.09
SPTLC1-201ENST00000262554 TFCP2Q12800 502 aa15.63■□□□□ 0.09
SPTLC1-201ENST00000262554 TNNI3KQ59H18 835 aa15.63■□□□□ 0.09
SPTLC1-201ENST00000262554 CHMP3Q9Y3E7 222 aa15.63■□□□□ 0.09
SPTLC1-201ENST00000262554 FPGT-TNNI3KV9GXZ4 949 aa15.63■□□□□ 0.09
SPTLC1-201ENST00000262554 GOLGA6L22H0YM25 854 aa15.63■□□□□ 0.09
SPTLC1-201ENST00000262554 STARD3NLO95772 234 aa15.63■□□□□ 0.09
SPTLC1-201ENST00000262554 MKRN4PQ13434 485 aaPredicted RBP15.63■□□□□ 0.09
SPTLC1-201ENST00000262554 BOLA2Q9H3K6 86 aa15.63■□□□□ 0.09
SPTLC1-201ENST00000262554 ATG3Q9NT62 314 aa15.63■□□□□ 0.09
SPTLC1-201ENST00000262554 EXOC5O00471 708 aa15.62■□□□□ 0.09
SPTLC1-201ENST00000262554 KIF6Q6ZMV9 814 aa15.62■□□□□ 0.09
SPTLC1-201ENST00000262554 DNAJC10Q8IXB1 793 aa15.62■□□□□ 0.09
SPTLC1-201ENST00000262554 ZGPATQ8N5A5 531 aaKnown RBP15.62■□□□□ 0.09
SPTLC1-201ENST00000262554 SNX14Q9Y5W7 946 aa15.62■□□□□ 0.09
SPTLC1-201ENST00000262554 ATP5JP18859 108 aa15.61■□□□□ 0.09
SPTLC1-201ENST00000262554 CUL4AQ13619 759 aa15.61■□□□□ 0.09
SPTLC1-201ENST00000262554 SKOR2Q2VWA4 1001 aaPredicted RBP15.61■□□□□ 0.09
SPTLC1-201ENST00000262554 FSD1Q9BTV5 496 aa15.61■□□□□ 0.09
SPTLC1-201ENST00000262554 UPF3BQ9BZI7 483 aaKnown RBP15.61■□□□□ 0.09
SPTLC1-201ENST00000262554 BCL9O00512 1426 aa15.61■□□□□ 0.09
SPTLC1-201ENST00000262554 CYP2E1P05181 493 aaPredicted RBP15.61■□□□□ 0.09
SPTLC1-201ENST00000262554 TCIRG1Q13488 830 aa15.61■□□□□ 0.09
SPTLC1-201ENST00000262554 ZNF330Q9Y3S2 320 aaPredicted RBP15.61■□□□□ 0.09
SPTLC1-201ENST00000262554 KAT6BQ8WYB5 2073 aa15.6■□□□□ 0.09
SPTLC1-201ENST00000262554 INTS4Q96HW7 963 aaKnown RBP15.6■□□□□ 0.09
SPTLC1-201ENST00000262554 ISCA1Q9BUE6 129 aa15.6■□□□□ 0.09
SPTLC1-201ENST00000262554 DBNLQ9UJU6 430 aaKnown RBP15.6■□□□□ 0.09
SPTLC1-201ENST00000262554 PHLPP1O60346 1717 aa15.6■□□□□ 0.09
SPTLC1-201ENST00000262554 BAG4O95429 457 aaKnown RBP15.59■□□□□ 0.09
SPTLC1-201ENST00000262554 PTH1RQ03431 593 aa15.59■□□□□ 0.09
SPTLC1-201ENST00000262554 NMIQ13287 307 aaPredicted RBP15.59■□□□□ 0.09
SPTLC1-201ENST00000262554 CCDC171Q6TFL3 1326 aa15.59■□□□□ 0.09
SPTLC1-201ENST00000262554 TRIM28Q13263 835 aaKnown RBP15.59■□□□□ 0.09
SPTLC1-201ENST00000262554 NOL8Q76FK4 1167 aaKnown RBP15.59■□□□□ 0.09
SPTLC1-201ENST00000262554 RASEFQ8IZ41 740 aa15.59■□□□□ 0.09
SPTLC1-201ENST00000262554 CDCA7Q9BWT1 371 aaPredicted RBP15.59■□□□□ 0.09
SPTLC1-201ENST00000262554 SNRKQ9NRH2 765 aa15.59■□□□□ 0.09
SPTLC1-201ENST00000262554 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.58■□□□□ 0.08
SPTLC1-201ENST00000262554 LTBP4Q8N2S1 1624 aa15.58■□□□□ 0.08
SPTLC1-201ENST00000262554 IL15P40933 162 aaPredicted RBP15.58■□□□□ 0.08
SPTLC1-201ENST00000262554 L1TD1Q5T7N2 865 aaKnown RBP15.58■□□□□ 0.08
SPTLC1-201ENST00000262554 FAM227BQ96M60 508 aa15.58■□□□□ 0.08
SPTLC1-201ENST00000262554 GZF1Q9H116 711 aaPredicted RBP15.58■□□□□ 0.08
SPTLC1-201ENST00000262554 PRPF40BQ6NWY9 871 aaKnown RBP15.57■□□□□ 0.08
SPTLC1-201ENST00000262554 ATG9AQ7Z3C6 839 aa15.57■□□□□ 0.08
SPTLC1-201ENST00000262554 KCNB2Q92953 911 aa15.57■□□□□ 0.08
SPTLC1-201ENST00000262554 DBNDD2Q9BQY9 259 aa15.57■□□□□ 0.08
SPTLC1-201ENST00000262554 GPR108Q9NPR9 543 aa15.57■□□□□ 0.08
SPTLC1-201ENST00000262554 RFX7Q2KHR2 1363 aa15.57■□□□□ 0.08
SPTLC1-201ENST00000262554 NRAPQ86VF7 1730 aa15.57■□□□□ 0.08
SPTLC1-201ENST00000262554 DOT1LQ8TEK3 1739 aa15.57■□□□□ 0.08
SPTLC1-201ENST00000262554 ZKSCAN1P17029 563 aaPredicted RBP15.57■□□□□ 0.08
SPTLC1-201ENST00000262554 KCNJ4P48050 445 aa15.57■□□□□ 0.08
SPTLC1-201ENST00000262554 PKP1Q13835 747 aa15.57■□□□□ 0.08
SPTLC1-201ENST00000262554 SYTL4Q96C24 671 aaPredicted RBP15.57■□□□□ 0.08
SPTLC1-201ENST00000262554 MAP3K15Q6ZN16 1313 aa15.56■□□□□ 0.08
SPTLC1-201ENST00000262554 A0A0D9SFI3 127 aa15.56■□□□□ 0.08
SPTLC1-201ENST00000262554 EYA2O00167 538 aa15.56■□□□□ 0.08
SPTLC1-201ENST00000262554 CIAO1O76071 339 aa15.56■□□□□ 0.08
SPTLC1-201ENST00000262554 CASTP20810 708 aaKnown RBP15.56■□□□□ 0.08
SPTLC1-201ENST00000262554 NECTIN1Q15223 517 aa15.56■□□□□ 0.08
SPTLC1-201ENST00000262554 MAP4K1Q92918 833 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms