RNA–Protein interactions for RNA: ENST00000241704.7

COPA-201, Transcript of coatomer protein complex subunit alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPA, Length 4,789 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-201ENST00000241704 NFATC2IPQ8NCF5 419 aa12.86□□□□□ -0.35
COPA-201ENST00000241704 LMBRD1Q9NUN5 540 aa12.86□□□□□ -0.35
COPA-201ENST00000241704 NBPF6Q5VWK0 638 aa12.85□□□□□ -0.35
COPA-201ENST00000241704 DDX46Q7L014 1031 aaKnown RBP12.85□□□□□ -0.35
COPA-201ENST00000241704 NBPF5PQ86XG9 351 aaPredicted RBP12.85□□□□□ -0.35
COPA-201ENST00000241704 NBPF4Q96M43 638 aa12.85□□□□□ -0.35
COPA-201ENST00000241704 RNMTO43148 476 aaKnown RBP12.85□□□□□ -0.35
COPA-201ENST00000241704 WDHD1O75717 1129 aaPredicted RBP12.85□□□□□ -0.35
COPA-201ENST00000241704 TSR1Q2NL82 804 aaKnown RBP12.85□□□□□ -0.35
COPA-201ENST00000241704 RHPN1Q8TCX5 695 aa12.85□□□□□ -0.35
COPA-201ENST00000241704 HOOK1Q9UJC3 728 aaKnown RBP12.85□□□□□ -0.35
COPA-201ENST00000241704 PAXBP1Q9Y5B6 917 aa12.85□□□□□ -0.35
COPA-201ENST00000241704 ANKRD18BA2A2Z9 1011 aa12.85□□□□□ -0.35
COPA-201ENST00000241704 RIOK3O14730 519 aaKnown RBP12.85□□□□□ -0.35
COPA-201ENST00000241704 CNKSR2Q8WXI2 1034 aa12.85□□□□□ -0.35
COPA-201ENST00000241704 SLAIN2Q9P270 581 aa12.85□□□□□ -0.35
COPA-201ENST00000241704 SYNMO15061 1565 aa12.85□□□□□ -0.35
COPA-201ENST00000241704 CDC42BPBQ9Y5S2 1711 aa12.84□□□□□ -0.35
COPA-201ENST00000241704 C16orf45Q96MC5 204 aaPredicted RBP12.84□□□□□ -0.35
COPA-201ENST00000241704 LINS1Q8NG48 757 aa12.84□□□□□ -0.35
COPA-201ENST00000241704 TSPOAP1O95153 1857 aa12.84□□□□□ -0.35
COPA-201ENST00000241704 CDC5LQ99459 802 aaKnown RBP12.84□□□□□ -0.35
COPA-201ENST00000241704 TFCP2L1Q9NZI6 479 aa12.84□□□□□ -0.35
COPA-201ENST00000241704 MNS1Q8NEH6 495 aa12.84□□□□□ -0.35
COPA-201ENST00000241704 EVI5LQ96CN4 794 aa12.84□□□□□ -0.35
COPA-201ENST00000241704 GRM8O00222 908 aa12.83□□□□□ -0.36
COPA-201ENST00000241704 AIDAQ96BJ3 306 aa12.83□□□□□ -0.36
COPA-201ENST00000241704 DCTPP1Q9H773 170 aa12.83□□□□□ -0.36
COPA-201ENST00000241704 CASTP20810 708 aaKnown RBP12.83□□□□□ -0.36
COPA-201ENST00000241704 GTF2F1P35269 517 aaKnown RBP eCLIP12.83□□□□□ -0.36
COPA-201ENST00000241704 STK3Q13188 491 aa12.83□□□□□ -0.36
COPA-201ENST00000241704 NLRP1Q9C000 1473 aa12.83□□□□□ -0.36
COPA-201ENST00000241704 PDLIM2Q96JY6 352 aa12.83□□□□□ -0.36
COPA-201ENST00000241704 UPF3BQ9BZI7 483 aaKnown RBP12.83□□□□□ -0.36
COPA-201ENST00000241704 ABCA9Q8IUA7 1624 aa12.83□□□□□ -0.36
COPA-201ENST00000241704 ST5P78524 1137 aa12.82□□□□□ -0.36
COPA-201ENST00000241704 TTLL12Q14166 644 aaPredicted RBP12.82□□□□□ -0.36
COPA-201ENST00000241704 LARP1BQ659C4 914 aaKnown RBP12.82□□□□□ -0.36
COPA-201ENST00000241704 PRPF40BQ6NWY9 871 aaKnown RBP12.82□□□□□ -0.36
COPA-201ENST00000241704 DZIP1Q86YF9 867 aaKnown RBP12.82□□□□□ -0.36
COPA-201ENST00000241704 CROCC2H7BZ55 1655 aa12.82□□□□□ -0.36
COPA-201ENST00000241704 ZBTB7BO15156 539 aaPredicted RBP12.82□□□□□ -0.36
COPA-201ENST00000241704 FIBPO43427 364 aa12.82□□□□□ -0.36
COPA-201ENST00000241704 SETQ01105 290 aaPredicted RBP12.82□□□□□ -0.36
COPA-201ENST00000241704 CEP85Q6P2H3 762 aa12.82□□□□□ -0.36
COPA-201ENST00000241704 CRACR2BQ8N4Y2 399 aaPredicted RBP12.82□□□□□ -0.36
COPA-201ENST00000241704 BMS1Q14692 1282 aaKnown RBP12.82□□□□□ -0.36
COPA-201ENST00000241704 LDHAL6AQ6ZMR3 332 aa12.82□□□□□ -0.36
COPA-201ENST00000241704 HOMER1Q86YM7 354 aa12.82□□□□□ -0.36
COPA-201ENST00000241704 ANKRD20A12PQ8NF67 263 aa12.82□□□□□ -0.36
COPA-201ENST00000241704 SETDB2Q96T68 719 aa12.82□□□□□ -0.36
COPA-201ENST00000241704 PRM3Q9NNZ6 103 aa12.82□□□□□ -0.36
COPA-201ENST00000241704 U3KPZ7 1027 aaPredicted RBP12.82□□□□□ -0.36
COPA-201ENST00000241704 ARHGEF10O15013 1369 aa12.82□□□□□ -0.36
COPA-201ENST00000241704 AATKQ6ZMQ8 1374 aa12.82□□□□□ -0.36
COPA-201ENST00000241704 HOXB7P09629 217 aa12.81□□□□□ -0.36
COPA-201ENST00000241704 POLD1P28340 1107 aa12.81□□□□□ -0.36
COPA-201ENST00000241704 PDE1AP54750 535 aa12.81□□□□□ -0.36
COPA-201ENST00000241704 ATP2B3Q16720 1220 aa12.81□□□□□ -0.36
COPA-201ENST00000241704 FAM135BQ49AJ0 1406 aa12.81□□□□□ -0.36
COPA-201ENST00000241704 SMTNL1A8MU46 457 aa12.81□□□□□ -0.36
COPA-201ENST00000241704 TPM1P09493 284 aa12.81□□□□□ -0.36
COPA-201ENST00000241704 HCLS1P14317 486 aaPredicted RBP12.81□□□□□ -0.36
COPA-201ENST00000241704 IMMTQ16891 758 aaKnown RBP12.81□□□□□ -0.36
COPA-201ENST00000241704 LEKR1Q6ZMV7 388 aa12.81□□□□□ -0.36
COPA-201ENST00000241704 NOC3LQ8WTT2 800 aaKnown RBP12.81□□□□□ -0.36
COPA-201ENST00000241704 ZNF396Q96N95 335 aaPredicted RBP12.81□□□□□ -0.36
COPA-201ENST00000241704 UBAC1Q9BSL1 405 aa12.81□□□□□ -0.36
COPA-201ENST00000241704 DEF6Q9H4E7 631 aa12.81□□□□□ -0.36
COPA-201ENST00000241704 ATP7BP35670 1465 aa12.81□□□□□ -0.36
COPA-201ENST00000241704 SLC5A1P13866 664 aa12.81□□□□□ -0.36
COPA-201ENST00000241704 GTF2A1P52655 376 aaPredicted RBP12.81□□□□□ -0.36
COPA-201ENST00000241704 ZNF397Q8NF99 534 aaPredicted RBP12.81□□□□□ -0.36
COPA-201ENST00000241704 USP5P45974 858 aa12.81□□□□□ -0.36
COPA-201ENST00000241704 TRIM22Q8IYM9 498 aa12.81□□□□□ -0.36
COPA-201ENST00000241704 NUP133Q8WUM0 1156 aa12.81□□□□□ -0.36
COPA-201ENST00000241704 SDF4Q9BRK5 362 aa12.81□□□□□ -0.36
COPA-201ENST00000241704 SDSP20132 328 aa12.8□□□□□ -0.36
COPA-201ENST00000241704 PCMTD1Q96MG8 357 aaPredicted RBP12.8□□□□□ -0.36
COPA-201ENST00000241704 ROBO2Q9HCK4 1378 aa12.8□□□□□ -0.36
COPA-201ENST00000241704 CLTCL1P53675 1640 aa12.8□□□□□ -0.36
COPA-201ENST00000241704 C17orf53Q8N3J3 647 aaPredicted RBP12.8□□□□□ -0.36
COPA-201ENST00000241704 DDX21Q9NR30 783 aaKnown RBP eCLIP12.8□□□□□ -0.36
COPA-201ENST00000241704 POLR3DP05423 398 aaPredicted RBP12.8□□□□□ -0.36
COPA-201ENST00000241704 PTPN14Q15678 1187 aa12.8□□□□□ -0.36
COPA-201ENST00000241704 TSHZ3Q63HK5 1081 aa12.8□□□□□ -0.36
COPA-201ENST00000241704 TMEM63CQ9P1W3 806 aa12.8□□□□□ -0.36
COPA-201ENST00000241704 RTCBQ9Y3I0 505 aaKnown RBP12.8□□□□□ -0.36
COPA-201ENST00000241704 PCDH11XQ9BZA7 1347 aa12.79□□□□□ -0.36
COPA-201ENST00000241704 PCDH11YQ9BZA8 1340 aa12.79□□□□□ -0.36
COPA-201ENST00000241704 KRT85P78386 507 aa12.79□□□□□ -0.36
COPA-201ENST00000241704 JARID2Q92833 1246 aaPredicted RBP12.79□□□□□ -0.36
COPA-201ENST00000241704 ZNF287Q9HBT7 754 aa12.79□□□□□ -0.36
COPA-201ENST00000241704 ZNF521Q96K83 1311 aa12.79□□□□□ -0.36
COPA-201ENST00000241704 CCDC69A6NI79 296 aa12.79□□□□□ -0.36
COPA-201ENST00000241704 SOGA3Q5TF21 947 aa12.79□□□□□ -0.36
COPA-201ENST00000241704 CTR9Q6PD62 1173 aa12.79□□□□□ -0.36
COPA-201ENST00000241704 TRMT2AQ8IZ69 625 aaKnown RBP12.79□□□□□ -0.36
COPA-201ENST00000241704 PHAXQ9H814 394 aaKnown RBP12.79□□□□□ -0.36
COPA-201ENST00000241704 G2E3Q7L622 706 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms