RNA–Protein interactions for RNA: ENST00000241393.3

CXCR4-201, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CXCR4, Length 1,682 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-201ENST00000241393 GPC1P35052 558 aa10.6□□□□□ -0.71
CXCR4-201ENST00000241393 MTFR1Q15390 333 aa10.6□□□□□ -0.71
CXCR4-201ENST00000241393 TRIM67Q6ZTA4 783 aa10.6□□□□□ -0.71
CXCR4-201ENST00000241393 TAS1R3Q7RTX0 852 aa10.6□□□□□ -0.71
CXCR4-201ENST00000241393 TXNDC2Q86VQ3 553 aa10.6□□□□□ -0.71
CXCR4-201ENST00000241393 STAG2Q8N3U4 1231 aa10.6□□□□□ -0.71
CXCR4-201ENST00000241393 SCHIP1Q9P0W5 487 aaPredicted RBP10.6□□□□□ -0.71
CXCR4-201ENST00000241393 ATAD2Q6PL18 1390 aa10.6□□□□□ -0.71
CXCR4-201ENST00000241393 PPP1R12BO60237 982 aaPredicted RBP10.6□□□□□ -0.71
CXCR4-201ENST00000241393 PSMA6P60900 246 aaKnown RBP10.6□□□□□ -0.71
CXCR4-201ENST00000241393 CCDC184Q52MB2 194 aa10.6□□□□□ -0.71
CXCR4-201ENST00000241393 HPS1Q92902 700 aa10.6□□□□□ -0.71
CXCR4-201ENST00000241393 CARD11Q9BXL7 1154 aa10.6□□□□□ -0.71
CXCR4-201ENST00000241393 GPRASP1Q5JY77 1395 aa10.59□□□□□ -0.71
CXCR4-201ENST00000241393 IL2RAP01589 272 aa10.59□□□□□ -0.71
CXCR4-201ENST00000241393 PRAG1Q86YV5 1406 aa10.58□□□□□ -0.72
CXCR4-201ENST00000241393 GNASQ5JWF2 1037 aa10.58□□□□□ -0.72
CXCR4-201ENST00000241393 PHLDB3Q6NSJ2 640 aa10.58□□□□□ -0.72
CXCR4-201ENST00000241393 SLC9A9Q8IVB4 645 aa10.58□□□□□ -0.72
CXCR4-201ENST00000241393 ZSCAN10Q96SZ4 725 aaPredicted RBP10.58□□□□□ -0.72
CXCR4-201ENST00000241393 EGFL7Q9UHF1 273 aa10.58□□□□□ -0.72
CXCR4-201ENST00000241393 ERCC6L2Q5T890 1561 aa10.57□□□□□ -0.72
CXCR4-201ENST00000241393 FAM187AA6NFU0 413 aa10.57□□□□□ -0.72
CXCR4-201ENST00000241393 EPHA4P54764 986 aa10.57□□□□□ -0.72
CXCR4-201ENST00000241393 CENPCQ03188 943 aa10.57□□□□□ -0.72
CXCR4-201ENST00000241393 SCARF1Q14162 830 aa10.57□□□□□ -0.72
CXCR4-201ENST00000241393 LAPTM4AQ15012 233 aa10.57□□□□□ -0.72
CXCR4-201ENST00000241393 CTC1Q2NKJ3 1217 aa10.57□□□□□ -0.72
CXCR4-201ENST00000241393 ZNF326Q5BKZ1 582 aaKnown RBP10.57□□□□□ -0.72
CXCR4-201ENST00000241393 TMEM214Q6NUQ4 689 aaKnown RBP10.57□□□□□ -0.72
CXCR4-201ENST00000241393 SND1Q7KZF4 910 aaKnown RBP eCLIP10.57□□□□□ -0.72
CXCR4-201ENST00000241393 AGBL1Q96MI9 1066 aa10.57□□□□□ -0.72
CXCR4-201ENST00000241393 ZCCHC11Q5TAX3 1644 aaKnown RBP10.57□□□□□ -0.72
CXCR4-201ENST00000241393 TRPM1Q7Z4N2 1603 aa10.57□□□□□ -0.72
CXCR4-201ENST00000241393 EIF2AK4Q9P2K8 1649 aaKnown RBP10.57□□□□□ -0.72
CXCR4-201ENST00000241393 ABCC1P33527 1531 aa10.57□□□□□ -0.72
CXCR4-201ENST00000241393 PLA2R1Q13018 1463 aa10.57□□□□□ -0.72
CXCR4-201ENST00000241393 DGAT1O75907 488 aa10.57□□□□□ -0.72
CXCR4-201ENST00000241393 FOXK2Q01167 660 aa10.57□□□□□ -0.72
CXCR4-201ENST00000241393 SLC27A3Q5K4L6 730 aa10.57□□□□□ -0.72
CXCR4-201ENST00000241393 EFCAB2Q5VUJ9 269 aa10.57□□□□□ -0.72
CXCR4-201ENST00000241393 TSPAN10Q9H1Z9 355 aaPredicted RBP10.57□□□□□ -0.72
CXCR4-201ENST00000241393 SLAIN2Q9P270 581 aa10.57□□□□□ -0.72
CXCR4-201ENST00000241393 RTEL1-TNFRSF6BF6WH68 1400 aa10.56□□□□□ -0.72
CXCR4-201ENST00000241393 E9PCH4 1651 aa10.56□□□□□ -0.72
CXCR4-201ENST00000241393 FAM9BQ8IZU0 186 aa10.56□□□□□ -0.72
CXCR4-201ENST00000241393 DCAF11Q8TEB1 546 aa10.56□□□□□ -0.72
CXCR4-201ENST00000241393 NIFKQ9BYG3 293 aaKnown RBP10.56□□□□□ -0.72
CXCR4-201ENST00000241393 STAU1O95793 577 aaKnown RBP10.55□□□□□ -0.72
CXCR4-201ENST00000241393 PKDCCQ504Y2 493 aa10.55□□□□□ -0.72
CXCR4-201ENST00000241393 LINC00528Q8N1L1 170 aa10.55□□□□□ -0.72
CXCR4-201ENST00000241393 ZNF395Q9H8N7 513 aaPredicted RBP10.55□□□□□ -0.72
CXCR4-201ENST00000241393 SMG6Q86US8 1419 aaKnown RBP10.54□□□□□ -0.72
CXCR4-201ENST00000241393 SF3B2Q13435 895 aaKnown RBP10.54□□□□□ -0.72
CXCR4-201ENST00000241393 RALBP1Q15311 655 aa10.54□□□□□ -0.72
CXCR4-201ENST00000241393 POLMQ9NP87 494 aaPredicted RBP10.54□□□□□ -0.72
CXCR4-201ENST00000241393 HRH3Q9Y5N1 445 aa10.54□□□□□ -0.72
CXCR4-201ENST00000241393 A2MP01023 1474 aa10.54□□□□□ -0.72
CXCR4-201ENST00000241393 BRD4O60885 1362 aaPredicted RBP10.54□□□□□ -0.72
CXCR4-201ENST00000241393 ST20-MTHFSA0A0A6YYL1 179 aa10.53□□□□□ -0.72
CXCR4-201ENST00000241393 SERTM1A2A2V5 107 aa10.53□□□□□ -0.72
CXCR4-201ENST00000241393 NRG2O14511 850 aaPredicted RBP10.53□□□□□ -0.72
CXCR4-201ENST00000241393 SPINT1O43278 529 aa10.53□□□□□ -0.72
CXCR4-201ENST00000241393 BMP2P12643 396 aa10.53□□□□□ -0.72
CXCR4-201ENST00000241393 FKBP5Q13451 457 aaPredicted RBP10.53□□□□□ -0.72
CXCR4-201ENST00000241393 KDF1Q8NAX2 398 aaPredicted RBP10.53□□□□□ -0.72
CXCR4-201ENST00000241393 RHBDD1Q8TEB9 315 aa10.53□□□□□ -0.72
CXCR4-201ENST00000241393 CABP1Q9NZU7 370 aa10.53□□□□□ -0.72
CXCR4-201ENST00000241393 PRDM15P57071 1507 aaPredicted RBP10.53□□□□□ -0.72
CXCR4-201ENST00000241393 ABL1P00519 1130 aa10.53□□□□□ -0.72
CXCR4-201ENST00000241393 AVPP01185 164 aa10.53□□□□□ -0.72
CXCR4-201ENST00000241393 RNF144AP50876 292 aaPredicted RBP10.53□□□□□ -0.72
CXCR4-201ENST00000241393 TEAD4Q15561 434 aa10.53□□□□□ -0.72
CXCR4-201ENST00000241393 MKNK1Q9BUB5 465 aa10.53□□□□□ -0.72
CXCR4-201ENST00000241393 PPP4R2Q9NY27 417 aa10.53□□□□□ -0.72
CXCR4-201ENST00000241393 ZNF232Q9UNY5 417 aa10.53□□□□□ -0.72
CXCR4-201ENST00000241393 WASHC2CQ9Y4E1 1318 aa10.53□□□□□ -0.72
CXCR4-201ENST00000241393 LGR5O75473 907 aa10.52□□□□□ -0.73
CXCR4-201ENST00000241393 CCDC27Q2M243 656 aa10.52□□□□□ -0.73
CXCR4-201ENST00000241393 FHDC1Q9C0D6 1143 aaPredicted RBP10.52□□□□□ -0.73
CXCR4-201ENST00000241393 MRPL14Q6P1L8 145 aaKnown RBP10.51□□□□□ -0.73
CXCR4-201ENST00000241393 C2orf49Q9BVC5 232 aaPredicted RBP10.51□□□□□ -0.73
CXCR4-201ENST00000241393 MYBBP1AQ9BQG0 1328 aaKnown RBP10.51□□□□□ -0.73
CXCR4-201ENST00000241393 LRPPRCP42704 1394 aaKnown RBP10.51□□□□□ -0.73
CXCR4-201ENST00000241393 COL17A1Q9UMD9 1497 aaPredicted RBP10.51□□□□□ -0.73
CXCR4-201ENST00000241393 SMCPP49901 116 aaPredicted RBP10.5□□□□□ -0.73
CXCR4-201ENST00000241393 HIRAP54198 1017 aaPredicted RBP10.5□□□□□ -0.73
CXCR4-201ENST00000241393 GLYCTKQ8IVS8 523 aa10.5□□□□□ -0.73
CXCR4-201ENST00000241393 PNISRQ8TF01 805 aaKnown RBP10.5□□□□□ -0.73
CXCR4-201ENST00000241393 INSRP06213 1382 aa10.5□□□□□ -0.73
CXCR4-201ENST00000241393 WDR7Q9Y4E6 1490 aa10.5□□□□□ -0.73
CXCR4-201ENST00000241393 SOWAHDA6NJG2 315 aa10.5□□□□□ -0.73
CXCR4-201ENST00000241393 C21orf2O43822 256 aa10.5□□□□□ -0.73
CXCR4-201ENST00000241393 GFRA3O60609 400 aa10.5□□□□□ -0.73
CXCR4-201ENST00000241393 HIF1AQ16665 826 aa10.5□□□□□ -0.73
CXCR4-201ENST00000241393 GTF3C2Q8WUA4 911 aaPredicted RBP10.5□□□□□ -0.73
CXCR4-201ENST00000241393 INSM2Q96T92 566 aaPredicted RBP10.5□□□□□ -0.73
CXCR4-201ENST00000241393 IQSEC3Q9UPP2 1182 aaPredicted RBP10.5□□□□□ -0.73
CXCR4-201ENST00000241393 TRAPPC8Q9Y2L5 1435 aa10.5□□□□□ -0.73
CXCR4-201ENST00000241393 ZMYM4Q5VZL5 1548 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms