RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 NUTM1Q86Y26 1132 aa10.81□□□□□ -0.68
VPS4B-201ENST00000238497 CARMIL3Q8ND23 1372 aa10.81□□□□□ -0.68
VPS4B-201ENST00000238497 PXDNLA1KZ92 1463 aa10.81□□□□□ -0.68
VPS4B-201ENST00000238497 PDE6BP35913 854 aa10.8□□□□□ -0.68
VPS4B-201ENST00000238497 CCDC27Q2M243 656 aa10.8□□□□□ -0.68
VPS4B-201ENST00000238497 DDX19BQ9UMR2 479 aa10.8□□□□□ -0.68
VPS4B-201ENST00000238497 C10orf71Q711Q0 1435 aa10.8□□□□□ -0.68
VPS4B-201ENST00000238497 COL5A3P25940 1745 aaPredicted RBP10.8□□□□□ -0.68
VPS4B-201ENST00000238497 PROSER3Q2NL68 480 aa10.8□□□□□ -0.68
VPS4B-201ENST00000238497 RNF181Q9P0P0 153 aa10.8□□□□□ -0.68
VPS4B-201ENST00000238497 C21orf2O43822 256 aa10.79□□□□□ -0.68
VPS4B-201ENST00000238497 VIRMAQ69YN4 1812 aaKnown RBP10.79□□□□□ -0.68
VPS4B-201ENST00000238497 KCNA3P22001 575 aa10.79□□□□□ -0.68
VPS4B-201ENST00000238497 CALD1Q05682 793 aaKnown RBP10.79□□□□□ -0.68
VPS4B-201ENST00000238497 C8orf34Q49A92 452 aa10.79□□□□□ -0.68
VPS4B-201ENST00000238497 C9orf131Q5VYM1 1079 aa10.79□□□□□ -0.68
VPS4B-201ENST00000238497 COPS6Q7L5N1 327 aa10.79□□□□□ -0.68
VPS4B-201ENST00000238497 BRIP1Q9BX63 1249 aa10.79□□□□□ -0.68
VPS4B-201ENST00000238497 CLEC4GQ6UXB4 293 aa10.79□□□□□ -0.68
VPS4B-201ENST00000238497 XAGE3Q8WTP9 111 aa10.79□□□□□ -0.68
VPS4B-201ENST00000238497 CHPF2Q9P2E5 772 aa10.78□□□□□ -0.68
VPS4B-201ENST00000238497 F6X3S4 739 aa10.78□□□□□ -0.68
VPS4B-201ENST00000238497 CHL1O00533 1208 aa10.78□□□□□ -0.68
VPS4B-201ENST00000238497 RASSF7Q02833 373 aa10.78□□□□□ -0.68
VPS4B-201ENST00000238497 MAP3K15Q6ZN16 1313 aa10.78□□□□□ -0.68
VPS4B-201ENST00000238497 VAMP4O75379 141 aa10.78□□□□□ -0.68
VPS4B-201ENST00000238497 SLC4A2P04920 1241 aa10.78□□□□□ -0.68
VPS4B-201ENST00000238497 DDRGK1Q96HY6 314 aa10.78□□□□□ -0.68
VPS4B-201ENST00000238497 CFAP44Q96MT7 982 aa10.78□□□□□ -0.68
VPS4B-201ENST00000238497 C4AP0C0L4 1744 aa10.77□□□□□ -0.68
VPS4B-201ENST00000238497 ATP10DQ9P241 1426 aa10.77□□□□□ -0.69
VPS4B-201ENST00000238497 ADAMTS7Q9UKP4 1686 aa10.76□□□□□ -0.69
VPS4B-201ENST00000238497 DEKP35659 375 aaKnown RBP10.76□□□□□ -0.69
VPS4B-201ENST00000238497 KIF16BQ96L93 1317 aa10.76□□□□□ -0.69
VPS4B-201ENST00000238497 CNKSR1Q969H4 720 aa10.76□□□□□ -0.69
VPS4B-201ENST00000238497 DLG5Q8TDM6 1919 aa10.76□□□□□ -0.69
VPS4B-201ENST00000238497 RPGRQ92834 1020 aaKnown RBP10.76□□□□□ -0.69
VPS4B-201ENST00000238497 BABAM1Q9NWV8 329 aa10.76□□□□□ -0.69
VPS4B-201ENST00000238497 N4BP2Q86UW6 1770 aaPredicted RBP10.75□□□□□ -0.69
VPS4B-201ENST00000238497 ZNF831Q5JPB2 1677 aa10.75□□□□□ -0.69
VPS4B-201ENST00000238497 ERFEQ4G0M1 354 aa10.75□□□□□ -0.69
VPS4B-201ENST00000238497 NYXQ9GZU5 481 aa10.75□□□□□ -0.69
VPS4B-201ENST00000238497 ATP5J2-PTCD1G3V325 749 aa10.75□□□□□ -0.69
VPS4B-201ENST00000238497 RIC3Q7Z5B4 369 aa10.75□□□□□ -0.69
VPS4B-201ENST00000238497 MASTLQ96GX5 879 aa10.75□□□□□ -0.69
VPS4B-201ENST00000238497 DDX21Q9NR30 783 aaKnown RBP eCLIP10.75□□□□□ -0.69
VPS4B-201ENST00000238497 FOXD4L1Q9NU39 408 aa10.75□□□□□ -0.69
VPS4B-201ENST00000238497 CHD4Q14839 1912 aa10.75□□□□□ -0.69
VPS4B-201ENST00000238497 ERVV-1B6SEH8 477 aa10.74□□□□□ -0.69
VPS4B-201ENST00000238497 SUSD4Q5VX71 490 aa10.74□□□□□ -0.69
VPS4B-201ENST00000238497 PRPF40BQ6NWY9 871 aaKnown RBP10.74□□□□□ -0.69
VPS4B-201ENST00000238497 GIGYF2Q6Y7W6 1299 aaKnown RBP10.74□□□□□ -0.69
VPS4B-201ENST00000238497 PPP1R42Q7Z4L9 355 aa10.74□□□□□ -0.69
VPS4B-201ENST00000238497 IFT57Q9NWB7 429 aa10.74□□□□□ -0.69
VPS4B-201ENST00000238497 DBF4Q9UBU7 674 aaPredicted RBP10.74□□□□□ -0.69
VPS4B-201ENST00000238497 TRMT112Q9UI30 125 aaKnown RBP10.74□□□□□ -0.69
VPS4B-201ENST00000238497 UBR2Q8IWV8 1755 aa10.74□□□□□ -0.69
VPS4B-201ENST00000238497 ERBB4Q15303 1308 aa10.74□□□□□ -0.69
VPS4B-201ENST00000238497 C16orf71Q8IYS4 520 aaPredicted RBP10.74□□□□□ -0.69
VPS4B-201ENST00000238497 TMX4Q9H1E5 349 aaPredicted RBP10.74□□□□□ -0.69
VPS4B-201ENST00000238497 SRGNP10124 158 aa10.73□□□□□ -0.69
VPS4B-201ENST00000238497 UTP14AQ9BVJ6 771 aaKnown RBP10.73□□□□□ -0.69
VPS4B-201ENST00000238497 HCLS1P14317 486 aaPredicted RBP10.73□□□□□ -0.69
VPS4B-201ENST00000238497 FKBP5Q13451 457 aaPredicted RBP10.73□□□□□ -0.69
VPS4B-201ENST00000238497 PDIA6Q15084 440 aa10.73□□□□□ -0.69
VPS4B-201ENST00000238497 OLFM4Q6UX06 510 aa10.73□□□□□ -0.69
VPS4B-201ENST00000238497 ANKRD13DQ6ZTN6 518 aa10.73□□□□□ -0.69
VPS4B-201ENST00000238497 STK31Q9BXU1 1019 aa10.73□□□□□ -0.69
VPS4B-201ENST00000238497 SIPA1L3O60292 1781 aaPredicted RBP10.73□□□□□ -0.69
VPS4B-201ENST00000238497 NPR1P16066 1061 aa10.73□□□□□ -0.69
VPS4B-201ENST00000238497 HSP90AB3PQ58FF7 597 aa10.73□□□□□ -0.69
VPS4B-201ENST00000238497 MRPL50Q8N5N7 158 aaKnown RBP10.73□□□□□ -0.69
VPS4B-201ENST00000238497 NLRP3Q96P20 1036 aa10.73□□□□□ -0.69
VPS4B-201ENST00000238497 NMRK2Q9NPI5 230 aa10.73□□□□□ -0.69
VPS4B-201ENST00000238497 HSP90AA1P07900 732 aaKnown RBP10.72□□□□□ -0.69
VPS4B-201ENST00000238497 C1QTNF8P60827 252 aa10.72□□□□□ -0.69
VPS4B-201ENST00000238497 TAOK3Q9H2K8 898 aa10.72□□□□□ -0.69
VPS4B-201ENST00000238497 UBN2Q6ZU65 1347 aa10.72□□□□□ -0.69
VPS4B-201ENST00000238497 SMARCA5O60264 1052 aaPredicted RBP10.72□□□□□ -0.69
VPS4B-201ENST00000238497 LMNB1P20700 586 aa10.72□□□□□ -0.69
VPS4B-201ENST00000238497 PARP10Q53GL7 1025 aa10.71□□□□□ -0.69
VPS4B-201ENST00000238497 G2E3Q7L622 706 aa10.71□□□□□ -0.69
VPS4B-201ENST00000238497 SYNE4Q8N205 404 aa10.71□□□□□ -0.69
VPS4B-201ENST00000238497 PHAXQ9H814 394 aaKnown RBP10.71□□□□□ -0.69
VPS4B-201ENST00000238497 HYPKQ9NX55 129 aa10.71□□□□□ -0.69
VPS4B-201ENST00000238497 ZBTB40Q9NUA8 1239 aa10.71□□□□□ -0.69
VPS4B-201ENST00000238497 COL24A1Q17RW2 1714 aa10.71□□□□□ -0.7
VPS4B-201ENST00000238497 ALDH1B1P30837 517 aa10.71□□□□□ -0.7
VPS4B-201ENST00000238497 CCDC30Q5VVM6 783 aa10.71□□□□□ -0.7
VPS4B-201ENST00000238497 STYK1Q6J9G0 422 aa10.71□□□□□ -0.7
VPS4B-201ENST00000238497 JARID2Q92833 1246 aaPredicted RBP10.71□□□□□ -0.7
VPS4B-201ENST00000238497 ABCC12Q96J65 1359 aa10.7□□□□□ -0.7
VPS4B-201ENST00000238497 TCIRG1Q13488 830 aa10.7□□□□□ -0.7
VPS4B-201ENST00000238497 FAM89AQ96GI7 184 aa10.7□□□□□ -0.7
VPS4B-201ENST00000238497 NFKBIEO00221 500 aa10.7□□□□□ -0.7
VPS4B-201ENST00000238497 CT47B1P0C2W7 299 aaPredicted RBP10.7□□□□□ -0.7
VPS4B-201ENST00000238497 CCDC93Q567U6 631 aa10.7□□□□□ -0.7
VPS4B-201ENST00000238497 ZNF34Q8IZ26 560 aa10.7□□□□□ -0.7
VPS4B-201ENST00000238497 CCDC85AQ96PX6 553 aaPredicted RBP10.7□□□□□ -0.7
VPS4B-201ENST00000238497 MYD88Q99836 296 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms