RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 TIA1P31483 386 aaKnown RBP eCLIP17.37■□□□□ 0.37
CLN3-262ENST00000637699 HTR6P50406 440 aa17.37■□□□□ 0.37
CLN3-262ENST00000637699 DMTNQ08495 405 aa17.37■□□□□ 0.37
CLN3-262ENST00000637699 C17orf67Q0P5P2 114 aa17.37■□□□□ 0.37
CLN3-262ENST00000637699 C2orf80Q0P641 193 aa17.37■□□□□ 0.37
CLN3-262ENST00000637699 CPEB4Q17RY0 729 aaKnown RBP eCLIP17.37■□□□□ 0.37
CLN3-262ENST00000637699 CLEC12BQ2HXU8 276 aa17.37■□□□□ 0.37
CLN3-262ENST00000637699 CTU2Q2VPK5 515 aaKnown RBP17.37■□□□□ 0.37
CLN3-262ENST00000637699 UNC50Q53HI1 259 aa17.37■□□□□ 0.37
CLN3-262ENST00000637699 NOA1Q8NC60 698 aaKnown RBP17.37■□□□□ 0.37
CLN3-262ENST00000637699 PAFAH2Q99487 392 aa17.37■□□□□ 0.37
CLN3-262ENST00000637699 TMEM204Q9BSN7 226 aa17.37■□□□□ 0.37
CLN3-262ENST00000637699 TBL1XR1Q9BZK7 514 aa17.37■□□□□ 0.37
CLN3-262ENST00000637699 Q9N2J8 555 aa17.37■□□□□ 0.37
CLN3-262ENST00000637699 STOML1Q9UBI4 398 aa17.37■□□□□ 0.37
CLN3-262ENST00000637699 NFU1Q9UMS0 254 aa17.37■□□□□ 0.37
CLN3-262ENST00000637699 C19orf53Q9UNZ5 99 aaPredicted RBP17.37■□□□□ 0.37
CLN3-262ENST00000637699 A0A087WV62 115 aa17.36■□□□□ 0.37
CLN3-262ENST00000637699 SOX30O94993 753 aa17.36■□□□□ 0.37
CLN3-262ENST00000637699 UTS2O95399 124 aa17.36■□□□□ 0.37
CLN3-262ENST00000637699 ANGPTL1O95841 491 aa17.36■□□□□ 0.37
CLN3-262ENST00000637699 ANXA4P09525 319 aaPredicted RBP17.36■□□□□ 0.37
CLN3-262ENST00000637699 SERPINB9P50453 376 aa17.36■□□□□ 0.37
CLN3-262ENST00000637699 TMEM44Q2T9K0 475 aa17.36■□□□□ 0.37
CLN3-262ENST00000637699 APOOLQ6UXV4 268 aa17.36■□□□□ 0.37
CLN3-262ENST00000637699 GPRIN3Q6ZVF9 776 aa17.36■□□□□ 0.37
CLN3-262ENST00000637699 MMGT1Q8N4V1 131 aa17.36■□□□□ 0.37
CLN3-262ENST00000637699 OR10D3Q8NH80 312 aa17.36■□□□□ 0.37
CLN3-262ENST00000637699 FANCFQ9NPI8 374 aa17.36■□□□□ 0.37
CLN3-262ENST00000637699 DDX18Q9NVP1 670 aaKnown RBP17.36■□□□□ 0.37
CLN3-262ENST00000637699 MRTO4Q9UKD2 239 aaKnown RBP17.36■□□□□ 0.37
CLN3-262ENST00000637699 RNF212BA8MTL3 300 aa17.35■□□□□ 0.37
CLN3-262ENST00000637699 TRIM49D1C9J1S8 452 aa17.35■□□□□ 0.37
CLN3-262ENST00000637699 POC1B-GALNT4F8VUJ3 575 aa17.35■□□□□ 0.37
CLN3-262ENST00000637699 UPK1AO00322 258 aa17.35■□□□□ 0.37
CLN3-262ENST00000637699 SS18L1O75177 396 aaPredicted RBP17.35■□□□□ 0.37
CLN3-262ENST00000637699 DDCP20711 480 aa17.35■□□□□ 0.37
CLN3-262ENST00000637699 IL11P20809 199 aa17.35■□□□□ 0.37
CLN3-262ENST00000637699 RPS4XP62701 263 aaKnown RBP17.35■□□□□ 0.37
CLN3-262ENST00000637699 ZNHIT3Q15649 155 aaPredicted RBP17.35■□□□□ 0.37
CLN3-262ENST00000637699 ZNF678Q5SXM1 525 aa17.35■□□□□ 0.37
CLN3-262ENST00000637699 HEPHL1Q6MZM0 1159 aa17.35■□□□□ 0.37
CLN3-262ENST00000637699 HMBOX1Q6NT76 420 aa17.35■□□□□ 0.37
CLN3-262ENST00000637699 BEND4Q6ZU67 534 aa17.35■□□□□ 0.37
CLN3-262ENST00000637699 RAB3IL1Q8TBN0 382 aa17.35■□□□□ 0.37
CLN3-262ENST00000637699 NANOS1Q8WY41 292 aaKnown RBP17.35■□□□□ 0.37
CLN3-262ENST00000637699 SLC9A6Q92581 669 aa17.35■□□□□ 0.37
CLN3-262ENST00000637699 ZNF382Q96SR6 550 aa17.35■□□□□ 0.37
CLN3-262ENST00000637699 C12orf49Q9H741 205 aa17.35■□□□□ 0.37
CLN3-262ENST00000637699 MCTS1Q9ULC4 181 aaKnown RBP17.35■□□□□ 0.37
CLN3-262ENST00000637699 TIMM22Q9Y584 194 aa17.35■□□□□ 0.37
CLN3-262ENST00000637699 GXYLT2A0PJZ3 443 aa17.34■□□□□ 0.37
CLN3-262ENST00000637699 CXCL13O43927 109 aa17.34■□□□□ 0.37
CLN3-262ENST00000637699 SYNGR4O95473 234 aa17.34■□□□□ 0.37
CLN3-262ENST00000637699 ABCA1O95477 2261 aa17.34■□□□□ 0.37
CLN3-262ENST00000637699 GABRA3P34903 492 aa17.34■□□□□ 0.37
CLN3-262ENST00000637699 PSMD4P55036 377 aaKnown RBP17.34■□□□□ 0.37
CLN3-262ENST00000637699 GRAMD1BQ3KR37 738 aa17.34■□□□□ 0.37
CLN3-262ENST00000637699 SPDYAQ5MJ70 313 aa17.34■□□□□ 0.37
CLN3-262ENST00000637699 GALNT18Q6P9A2 607 aa17.34■□□□□ 0.37
CLN3-262ENST00000637699 STK32CQ86UX6 486 aa17.34■□□□□ 0.37
CLN3-262ENST00000637699 WDR75Q8IWA0 830 aaKnown RBP17.34■□□□□ 0.37
CLN3-262ENST00000637699 C11orf24Q96F05 449 aaPredicted RBP17.34■□□□□ 0.37
CLN3-262ENST00000637699 TMEM237Q96Q45 408 aa17.34■□□□□ 0.37
CLN3-262ENST00000637699 KCNA7Q96RP8 456 aa17.34■□□□□ 0.37
CLN3-262ENST00000637699 NPAS1Q99742 590 aa17.34■□□□□ 0.37
CLN3-262ENST00000637699 FUT8Q9BYC5 575 aa17.34■□□□□ 0.37
CLN3-262ENST00000637699 REG4Q9BYZ8 158 aa17.34■□□□□ 0.37
CLN3-262ENST00000637699 SHCBP1LQ9BZQ2 653 aa17.34■□□□□ 0.37
CLN3-262ENST00000637699 GLIPR2Q9H4G4 154 aa17.34■□□□□ 0.37
CLN3-262ENST00000637699 MIEF1Q9NQG6 463 aa17.34■□□□□ 0.37
CLN3-262ENST00000637699 GPR52Q9Y2T5 361 aa17.34■□□□□ 0.37
CLN3-262ENST00000637699 IGLV3-32A0A0A0MS00 114 aa17.33■□□□□ 0.36
CLN3-262ENST00000637699 CLOCKO15516 846 aa17.33■□□□□ 0.36
CLN3-262ENST00000637699 PSMG1O95456 288 aa17.33■□□□□ 0.36
CLN3-262ENST00000637699 IGKV1D-16P01601 117 aa17.33■□□□□ 0.36
CLN3-262ENST00000637699 TP53P04637 393 aaPredicted RBP17.33■□□□□ 0.36
CLN3-262ENST00000637699 TAC1P20366 129 aa17.33■□□□□ 0.36
CLN3-262ENST00000637699 PRR5P85299 388 aa17.33■□□□□ 0.36
CLN3-262ENST00000637699 ZNF844Q08AG5 666 aa17.33■□□□□ 0.36
CLN3-262ENST00000637699 GALNT10Q86SR1 603 aa17.33■□□□□ 0.36
CLN3-262ENST00000637699 OR2L13Q8N349 312 aa17.33■□□□□ 0.36
CLN3-262ENST00000637699 CEP112Q8N8E3 955 aa17.33■□□□□ 0.36
CLN3-262ENST00000637699 LILRB1Q8NHL6 650 aaPredicted RBP17.33■□□□□ 0.36
CLN3-262ENST00000637699 DCAKDQ8WVC6 231 aa17.33■□□□□ 0.36
CLN3-262ENST00000637699 PIK3R3Q92569 461 aa17.33■□□□□ 0.36
CLN3-262ENST00000637699 ELP4Q96EB1 424 aa17.33■□□□□ 0.36
CLN3-262ENST00000637699 TRMT61AQ96FX7 289 aaKnown RBP17.33■□□□□ 0.36
CLN3-262ENST00000637699 ADGRG7Q96K78 797 aa17.33■□□□□ 0.36
CLN3-262ENST00000637699 TACO1Q9BSH4 297 aaKnown RBP17.33■□□□□ 0.36
CLN3-262ENST00000637699 LMF2Q9BU23 707 aaKnown RBP17.33■□□□□ 0.36
CLN3-262ENST00000637699 CDC42EP4Q9H3Q1 356 aaKnown RBP17.33■□□□□ 0.36
CLN3-262ENST00000637699 PAQR5Q9NXK6 330 aaPredicted RBP17.33■□□□□ 0.36
CLN3-262ENST00000637699 TNFSF11O14788 317 aa17.32■□□□□ 0.36
CLN3-262ENST00000637699 DLX3O60479 287 aa17.32■□□□□ 0.36
CLN3-262ENST00000637699 SLITRK5O94991 958 aa17.32■□□□□ 0.36
CLN3-262ENST00000637699 KCNH1O95259 989 aa17.32■□□□□ 0.36
CLN3-262ENST00000637699 ZNF17P17021 662 aa17.32■□□□□ 0.36
CLN3-262ENST00000637699 PSMB1P20618 241 aaKnown RBP17.32■□□□□ 0.36
CLN3-262ENST00000637699 NTSP30990 170 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms