RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 ZNF404Q494X3 552 aa10.73□□□□□ -0.69
CLIP1-219ENST00000620786 PKDCCQ504Y2 493 aa10.73□□□□□ -0.69
CLIP1-219ENST00000620786 TRIM46Q7Z4K8 759 aa10.73□□□□□ -0.69
CLIP1-219ENST00000620786 MFSD9Q8NBP5 474 aa10.73□□□□□ -0.69
CLIP1-219ENST00000620786 OR2A12Q8NGT7 310 aa10.73□□□□□ -0.69
CLIP1-219ENST00000620786 OR5K2Q8NHB8 316 aa10.73□□□□□ -0.69
CLIP1-219ENST00000620786 CTRCQ99895 268 aa10.73□□□□□ -0.69
CLIP1-219ENST00000620786 TREM1Q9NP99 234 aa10.73□□□□□ -0.69
CLIP1-219ENST00000620786 CUEDC1Q9NWM3 386 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-219ENST00000620786 UBE2J1Q9Y385 318 aaPredicted RBP10.73□□□□□ -0.69
CLIP1-219ENST00000620786 C4AP0C0L4 1744 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 ANTXRLA6NF34 631 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 OR5M10Q6IEU7 315 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 GAREM2Q75VX8 874 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 WDR53Q7Z5U6 358 aaPredicted RBP10.72□□□□□ -0.69
CLIP1-219ENST00000620786 IQCF1Q8N6M8 205 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 ACBD7Q8N6N7 88 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 OR4K5Q8NGD3 323 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 FER1L6-AS2Q96M78 137 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 CCM2LQ9NUG4 571 aaPredicted RBP10.72□□□□□ -0.69
CLIP1-219ENST00000620786 BTNL2Q9UIR0 455 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 GPR160Q9UJ42 338 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 EEF1E1O43324 174 aaKnown RBP10.72□□□□□ -0.69
CLIP1-219ENST00000620786 FUT1P19526 365 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 SSR4P51571 173 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 C22orf42Q6IC83 251 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 ZNF517Q6ZMY9 492 aaPredicted RBP10.72□□□□□ -0.69
CLIP1-219ENST00000620786 OR51T1Q8NGJ9 327 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 OR14A16Q8NHC5 309 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 TBC1D20Q96BZ9 403 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 MUCL1Q96DR8 90 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 OR4K3Q96R72 315 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 RAB9BQ9NP90 201 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 H3BSA7 217 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 SOCS7O14512 581 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 UCHL1P09936 223 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 PITPNBP48739 271 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 PIGFQ07326 219 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 TMEM236Q5W0B7 351 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 HACD2Q6Y1H2 254 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 ELMOD2Q8IZ81 293 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 ZFP41Q8N8Y5 198 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 NETO1Q8TDF5 533 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 SMIM14Q96QK8 99 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 HDAC8Q9BY41 377 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 CHRDQ9H2X0 955 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 MYNNQ9NPC7 610 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 H0YGG7 62 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 GSTT2P0CG29 244 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 RGRP47804 291 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 ATXN7L3Q14CW9 347 aaPredicted RBP10.72□□□□□ -0.69
CLIP1-219ENST00000620786 UGT8Q16880 541 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 CTSL3PQ5NE16 218 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 ZNF610Q8N9Z0 462 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 OR1J4Q8NGS1 313 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 PHF7Q9BWX1 381 aaPredicted RBP10.72□□□□□ -0.69
CLIP1-219ENST00000620786 HCAR1Q9BXC0 346 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 NGBQ9NPG2 151 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 FAM86C1Q9NVL1 165 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 ARMC1Q9NVT9 282 aa10.72□□□□□ -0.69
CLIP1-219ENST00000620786 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-219ENST00000620786 OTOL1A6NHN0 477 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-219ENST00000620786 FAM155AB1AL88 458 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-219ENST00000620786 M0R036 132 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 ATG12O94817 140 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 F11P03951 625 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 SGSHP51688 502 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 C9orf135Q5VTT2 229 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 ELSPBP1Q96BH3 223 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 PAK1IP1Q9NWT1 392 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-219ENST00000620786 CNIH4Q9P003 139 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 KCNN3Q9UGI6 736 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 POLHQ9Y253 713 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 NUP98P52948 1817 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 MROH6A6NGR9 719 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 ADAP00813 363 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 CD97P48960 835 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 TRA2BP62995 288 aaKnown RBP10.71□□□□□ -0.69
CLIP1-219ENST00000620786 TMEM240Q5SV17 173 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 XKR5Q6UX68 686 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 BAIAP2L2Q6UXY1 529 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 LINC00696Q6ZRV3 163 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 OR51L1Q8NGJ5 315 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 SFXN5Q8TD22 340 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 CHFRQ96EP1 664 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 OR10A5Q9H207 317 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 OR10A2Q9H208 303 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 PLEK2Q9NYT0 353 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 USP36Q9P275 1121 aaKnown RBP10.71□□□□□ -0.69
CLIP1-219ENST00000620786 LOC102725191A0A1B0GVB3 256 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 SRPX2O60687 465 aaPredicted RBP10.71□□□□□ -0.69
CLIP1-219ENST00000620786 IFNA5P01569 189 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 CPMP14384 443 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 AOAHP28039 575 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 IRS1P35568 1242 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 CPOXP36551 454 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 FAM189BP81408 668 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 LRRC37A5PQ49AS3 106 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 PPP1R35Q8TAP8 253 aa10.71□□□□□ -0.69
CLIP1-219ENST00000620786 BTBD2Q9BX70 525 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms