RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 A0A1W2PRS3 328 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 PRAMEF25A6NGN4 478 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 KIR3DP1A8MWS1 328 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 FADS1O60427 444 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 H6PDO95479 791 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 P04436 131 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 BCHEP06276 602 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 NR2F1P10589 423 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 EVI2BP34910 448 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 CPOXP36551 454 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 CASP3P42574 277 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 SLC7A2P52569 658 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 PSME3P61289 254 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 SNTA1Q13424 505 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 CYP51A1Q16850 503 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 PLEKHN1Q494U1 663 aaPredicted RBP18.06■□□□□ 0.48
UPF3A-211ENST00000618700 FLYWCH1Q4VC44 716 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 GPAT3Q53EU6 434 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 PRAMEF20Q5VT98 475 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 TYW3Q6IPR3 259 aaKnown RBP18.06■□□□□ 0.48
UPF3A-211ENST00000618700 LRRC74BQ6ZQY2 392 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 GALNTL5Q7Z4T8 443 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 METTL25Q8N6Q8 603 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 Q8NA96 180 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 POGLUT1Q8NBL1 392 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 OR4C3Q8NH37 302 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 OR10A6Q8NH74 314 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 SPATA9Q9BWV2 254 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 ANGPTL4Q9BY76 406 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 AP3M1Q9Y2T2 418 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 WDR45Q9Y484 360 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 KALRNO60229 2985 aa18.06■□□□□ 0.48
UPF3A-211ENST00000618700 SPENQ96T58 3664 aaKnown RBP18.05■□□□□ 0.48
UPF3A-211ENST00000618700 NME4O00746 187 aa18.05■□□□□ 0.48
UPF3A-211ENST00000618700 SLC28A2O43868 658 aa18.05■□□□□ 0.48
UPF3A-211ENST00000618700 OXSR1O95747 527 aaPredicted RBP18.05■□□□□ 0.48
UPF3A-211ENST00000618700 CNR1P21554 472 aa18.05■□□□□ 0.48
UPF3A-211ENST00000618700 TBXA2RP21731 343 aa18.05■□□□□ 0.48
UPF3A-211ENST00000618700 DCTP40126 519 aa18.05■□□□□ 0.48
UPF3A-211ENST00000618700 CRISP3P54108 245 aa18.05■□□□□ 0.48
UPF3A-211ENST00000618700 HPCAP84074 193 aa18.05■□□□□ 0.48
UPF3A-211ENST00000618700 RBBP4Q09028 425 aa18.05■□□□□ 0.48
UPF3A-211ENST00000618700 KLRB1Q12918 225 aa18.05■□□□□ 0.48
UPF3A-211ENST00000618700 ZNF630Q2M218 657 aaPredicted RBP18.05■□□□□ 0.48
UPF3A-211ENST00000618700 TBCELQ5QJ74 424 aa18.05■□□□□ 0.48
UPF3A-211ENST00000618700 PRAMEF8Q5VWM4 474 aa18.05■□□□□ 0.48
UPF3A-211ENST00000618700 PRAMEF7Q5VXH5 474 aa18.05■□□□□ 0.48
UPF3A-211ENST00000618700 RPUSD3Q6P087 351 aaKnown RBP18.05■□□□□ 0.48
UPF3A-211ENST00000618700 ZZZ3Q8IYH5 903 aa18.05■□□□□ 0.48
UPF3A-211ENST00000618700 PGAM4Q8N0Y7 254 aa18.05■□□□□ 0.48
UPF3A-211ENST00000618700 RBM15BQ8NDT2 890 aaKnown RBP18.05■□□□□ 0.48
UPF3A-211ENST00000618700 ZNF583Q96ND8 569 aa18.05■□□□□ 0.48
UPF3A-211ENST00000618700 OSBPL11Q9BXB4 747 aa18.05■□□□□ 0.48
UPF3A-211ENST00000618700 METTL7AQ9H8H3 244 aa18.05■□□□□ 0.48
UPF3A-211ENST00000618700 UBQLN4Q9NRR5 601 aa18.05■□□□□ 0.48
UPF3A-211ENST00000618700 KCNE5Q9UJ90 142 aa18.05■□□□□ 0.48
UPF3A-211ENST00000618700 MKLN1Q9UL63 735 aa18.05■□□□□ 0.48
UPF3A-211ENST00000618700 NPIPA5A0A0B4J1W7 369 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 CENPVL1A0A0U1RR11 272 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 ALG1L2C9J202 215 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 NPIPA7E9PJI5 369 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 G3V3Y1 287 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 SORBS2O94875 1100 aaKnown RBP18.04■□□□□ 0.48
UPF3A-211ENST00000618700 NPIPA8P0DM63 369 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 ATP12AP54707 1039 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 GAS1P54826 345 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 SLC25A3Q00325 362 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 CDK6Q00534 326 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 CHRNEQ04844 493 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 GNA13Q14344 377 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 ZNF141Q15928 474 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 INAQ16352 499 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 SLC30A6Q6NXT4 461 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 APOOLQ6UXV4 268 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 SULF2Q8IWU5 870 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 ZNF619Q8N2I2 560 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 TEX19Q8NA77 164 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 C11orf65Q8NCR3 313 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 OR2M7Q8NG81 312 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 NFKBIDQ8NI38 313 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 OIT3Q8WWZ8 545 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 REXO5Q96IC2 774 aaKnown RBP18.04■□□□□ 0.48
UPF3A-211ENST00000618700 FRMD6Q96NE9 622 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 TREX2Q9BQ50 279 aaPredicted RBP18.04■□□□□ 0.48
UPF3A-211ENST00000618700 ECSITQ9BQ95 431 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 FAM173AQ9BQD7 235 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 RTN4RQ9BZR6 473 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 HOXD1Q9GZZ0 328 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 GALNT9Q9HCQ5 603 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 SPAG4Q9NPE6 437 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 NDE1Q9NXR1 346 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 KLRF1Q9NZS2 232 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 CALML5Q9NZT1 146 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 TMEM181Q9P2C4 612 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 L3MBTL1Q9Y468 752 aa18.04■□□□□ 0.48
UPF3A-211ENST00000618700 A0A1W2PQD3 144 aa18.03■□□□□ 0.48
UPF3A-211ENST00000618700 PINLYPA6NC86 204 aa18.03■□□□□ 0.48
UPF3A-211ENST00000618700 TMEM247A6NEH6 219 aa18.03■□□□□ 0.48
UPF3A-211ENST00000618700 FAM220BPB1ANY3 271 aa18.03■□□□□ 0.48
UPF3A-211ENST00000618700 B2RBV5 119 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms