RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 SLC37A3Q8NCC5 494 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 GEMIN6Q8WXD5 167 aaKnown RBP13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 ART5Q96L15 291 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 LINC00615Q96LM1 132 aaPredicted RBP13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 OPALINQ96PE5 141 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 PIP5K1AQ99755 562 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 LMAN2LQ9H0V9 348 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 SERHL2Q9H4I8 314 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 CDCP1Q9H5V8 836 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 HHATLQ9HCP6 504 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 ZNF624Q9P2J8 865 aaPredicted RBP13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 NFKBIL1Q9UBC1 381 aaPredicted RBP13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 PRAMEF27A3QJZ7 478 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 FFAR1O14842 300 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 PDGFAP04085 211 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 HIST1H1TP22492 207 aaPredicted RBP13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 CPN2P22792 545 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 PPP2R1BP30154 601 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 ATP6V1E1P36543 226 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 DHPSP49366 369 aaPredicted RBP13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 TPMTP51580 245 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 MICAQ29983 383 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 SLC35F1Q5T1Q4 408 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 FRMPD2BQ6IN97 320 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 GPR32P1Q8NGA4 272 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 CRELD1Q96HD1 420 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 B3GNT4Q9C0J1 378 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 POLR2J3Q9H1A7 115 aaKnown RBP13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 TRAPPC4Q9Y296 219 aa13.56□□□□□ -0.24
SHROOM1-208ENST00000617339 PEBP1P30086 187 aaKnown RBP13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 MAP2K3P46734 347 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 SLC16A1P53985 500 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 LARS2Q15031 903 aaKnown RBP13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 ZNF630Q2M218 657 aaPredicted RBP13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 LCN1P1Q5VSP4 162 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 MLIPQ5VWP3 458 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 SYT14Q8NB59 555 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 GALNT6Q8NCL4 622 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 OR13H1Q8NG92 308 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 OR4M2Q8NGB6 313 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 OR6T1Q8NGN1 323 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 OR5P2Q8WZ92 322 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 KLHDC7BQ96G42 594 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 AMDHD1Q96NU7 426 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 ZNF222Q9UK12 451 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 MRPS2Q9Y399 296 aaKnown RBP13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 ATP6V1G2-DDX39BF2Z307 99 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 OR10H2O60403 315 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 NT5EP21589 574 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 ENPP1P22413 925 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 TRIM23P36406 574 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 XKP51811 444 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 RGS1Q08116 209 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 FIGNL1Q6PIW4 674 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 FAM111BQ6SJ93 734 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 SMARCD3Q6STE5 483 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 PLCZ1Q86YW0 608 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 SLC16A11Q8NCK7 471 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 MS4A6EQ96DS6 147 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 QRFPRQ96P65 431 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 C1QTNF2Q9BXJ5 285 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 C3orf14Q9HBI5 128 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 CLN6Q9NWW5 311 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 SSR3Q9UNL2 185 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 ZNF780BQ9Y6R6 833 aa13.55□□□□□ -0.24
SHROOM1-208ENST00000617339 A0A075B6Q4 140 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 SEMA7AO75326 666 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 SLC2A2P11168 524 aaPredicted RBP13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 CCR4P51679 360 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 VSX2P58304 361 aaPredicted RBP13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 TGM3Q08188 693 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 GPR18Q14330 331 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 IQCCQ4KMZ1 466 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 RASGRP3Q8IV61 690 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 OR52E4Q8NGH9 312 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 BMFQ96LC9 184 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 WACQ9BTA9 647 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 FAIM2Q9BWQ8 316 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 ENPP4Q9Y6X5 453 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 MDC1Q14676 2089 aaKnown RBP13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 NPIPB8E9PQR5 432 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 ENTPD6O75354 484 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 SLC35G6P0C7Q6 338 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 GKN3PP0CG01 181 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 ARAFP10398 606 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 ATP5A1P25705 553 aaKnown RBP13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 RPL3P39023 403 aaKnown RBP13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 CDC42P60953 191 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 BNC1Q01954 994 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 RPA4Q13156 261 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 IL18Q14116 193 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 LAMTOR1Q6IAA8 161 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 TCTN3Q6NUS6 607 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 PHC2Q8IXK0 858 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 RDH10Q8IZV5 341 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 GALNT11Q8NCW6 608 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 SLC7A13Q8TCU3 470 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 ADAMTS15Q8TE58 950 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 MIXL1Q9H2W2 232 aa13.54□□□□□ -0.24
SHROOM1-208ENST00000617339 PCDHGA2Q9Y5H1 932 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms