RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 OTUD3Q5T2D3 398 aaPredicted RBP13.17□□□□□ -0.3
USP39-220ENST00000613444 RNF220Q5VTB9 566 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 SLC29A4Q7RTT9 530 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 STK32CQ86UX6 486 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 DHRS1Q96LJ7 313 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 EPYCQ99645 322 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 REEP1Q9H902 201 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 C8orf4Q9NR00 106 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 A4GNTQ9UNA3 340 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 ZNF232Q9UNY5 417 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 SLC9A8Q9Y2E8 581 aa13.17□□□□□ -0.3
USP39-220ENST00000613444 SAMHD1Q9Y3Z3 626 aaKnown RBP13.17□□□□□ -0.3
USP39-220ENST00000613444 IGHV1-45A0A0A0MS14 117 aa13.16□□□□□ -0.3
USP39-220ENST00000613444 A0A1W2PQ72 361 aa13.16□□□□□ -0.3
USP39-220ENST00000613444 CDC14CA4D256 554 aa13.16□□□□□ -0.3
USP39-220ENST00000613444 CDHR4A6H8M9 788 aa13.16□□□□□ -0.3
USP39-220ENST00000613444 ADAMDEC1O15204 470 aa13.16□□□□□ -0.3
USP39-220ENST00000613444 FRS3O43559 492 aa13.16□□□□□ -0.3
USP39-220ENST00000613444 E2F6O75461 281 aa13.16□□□□□ -0.3
USP39-220ENST00000613444 IL33O95760 270 aa13.16□□□□□ -0.3
USP39-220ENST00000613444 ALPLP05186 524 aa13.16□□□□□ -0.3
USP39-220ENST00000613444 TCN2P20062 427 aa13.16□□□□□ -0.3
USP39-220ENST00000613444 FPR1P21462 350 aa13.16□□□□□ -0.3
USP39-220ENST00000613444 LIN52Q52LA3 116 aa13.16□□□□□ -0.3
USP39-220ENST00000613444 PDZK1Q5T2W1 519 aa13.16□□□□□ -0.3
USP39-220ENST00000613444 WLSQ5T9L3 541 aa13.16□□□□□ -0.3
USP39-220ENST00000613444 OR4C3Q8NH37 302 aa13.16□□□□□ -0.3
USP39-220ENST00000613444 NRBF2Q96F24 287 aa13.16□□□□□ -0.3
USP39-220ENST00000613444 VMP1Q96GC9 406 aa13.16□□□□□ -0.3
USP39-220ENST00000613444 OSBPL10Q9BXB5 764 aa13.16□□□□□ -0.3
USP39-220ENST00000613444 TCFL5Q9UL49 500 aa13.16□□□□□ -0.3
USP39-220ENST00000613444 CD63P08962 238 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 COX6A1P12074 109 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 ATP6V1C1P21283 382 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 PRKACGP22612 351 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 MMP11P24347 488 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 FOLR3P41439 243 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 NR0B1P51843 470 aaKnown RBP13.15□□□□□ -0.3
USP39-220ENST00000613444 ATP12AP54707 1039 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 RPS18P62269 152 aaKnown RBP13.15□□□□□ -0.3
USP39-220ENST00000613444 DAG1Q14118 895 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 DECR1Q16698 335 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 MRPL2Q5T653 305 aaKnown RBP13.15□□□□□ -0.3
USP39-220ENST00000613444 KIRREL2Q6UWL6 708 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 HSDL2Q6YN16 418 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 DEF8Q6ZN54 512 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 HIPK1Q86Z02 1210 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 EFHD2Q96C19 240 aaPredicted RBP13.15□□□□□ -0.3
USP39-220ENST00000613444 IMMP1LQ96LU5 166 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 ZNF700Q9H0M5 742 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 GABARAPL1Q9H0R8 117 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 VCXQ9H320 206 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 TRIM45Q9H8W5 580 aaPredicted RBP13.15□□□□□ -0.3
USP39-220ENST00000613444 SMURF2Q9HAU4 748 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 USE1Q9NZ43 259 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 FLRT3Q9NZU0 649 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 SOCS6O14544 535 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 ACADSP16219 412 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 RNF144AP50876 292 aaPredicted RBP13.15□□□□□ -0.3
USP39-220ENST00000613444 NOVA1P51513 510 aaKnown RBP13.15□□□□□ -0.3
USP39-220ENST00000613444 ALDH3A2P51648 485 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 ZNF136P52737 540 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 CDH12P55289 794 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 SPIBQ01892 262 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 GANABQ14697 944 aaKnown RBP13.15□□□□□ -0.3
USP39-220ENST00000613444 TAF11Q15544 211 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 CMPK2Q5EBM0 449 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 NHSL2Q5HYW2 709 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 ESX1Q8N693 406 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 OR8K3Q8NH51 312 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 NUBPLQ8TB37 319 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 MAGEE2Q8TD90 523 aaPredicted RBP13.15□□□□□ -0.3
USP39-220ENST00000613444 DIO2Q92813 273 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 TP53INP1Q96A56 240 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 HSPBAP1Q96EW2 488 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 PRR14Q9BWN1 585 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 LIN28AQ9H9Z2 209 aaKnown RBP13.15□□□□□ -0.3
USP39-220ENST00000613444 NMNAT1Q9HAN9 279 aaPredicted RBP13.15□□□□□ -0.3
USP39-220ENST00000613444 RHCGQ9UBD6 479 aa13.15□□□□□ -0.3
USP39-220ENST00000613444 FARSAQ9Y285 508 aaKnown RBP13.15□□□□□ -0.3
USP39-220ENST00000613444 FAM32AQ9Y421 112 aaKnown RBP13.15□□□□□ -0.3
USP39-220ENST00000613444 TNFRSF11BO00300 401 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 PCDH17O14917 1159 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 TSPAN2O60636 221 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 ZNF354AO60765 605 aaPredicted RBP13.14□□□□□ -0.31
USP39-220ENST00000613444 F8A1P23610 371 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 STAT5AP42229 794 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 PIN1Q13526 163 aaPredicted RBP13.14□□□□□ -0.31
USP39-220ENST00000613444 FGFBP1Q14512 234 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 EIPR1Q53HC9 387 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 HLA-DQA1Q5Y7H0 255 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 C16orf47Q6ZP98 133 aaPredicted RBP13.14□□□□□ -0.31
USP39-220ENST00000613444 PRR22Q8IZ63 422 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 NLGN4XQ8N0W4 816 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 NLGN4YQ8NFZ3 816 aaPredicted RBP13.14□□□□□ -0.31
USP39-220ENST00000613444 OR11G2Q8NGC1 345 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 ELP5Q8TE02 316 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 FUZQ9BT04 418 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 POLR1BQ9H9Y6 1135 aa13.14□□□□□ -0.31
USP39-220ENST00000613444 MAN2C1Q9NTJ4 1040 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms