RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 HLA-DPB1P04440 258 aa13.14□□□□□ -0.31
COL6A1-207ENST00000612273 ZNF19P17023 458 aa13.14□□□□□ -0.31
COL6A1-207ENST00000612273 MRPL28Q13084 256 aaKnown RBP13.14□□□□□ -0.31
COL6A1-207ENST00000612273 TPBGQ13641 420 aa13.14□□□□□ -0.31
COL6A1-207ENST00000612273 MINDY4Q4G0A6 757 aa13.14□□□□□ -0.31
COL6A1-207ENST00000612273 RDH10Q8IZV5 341 aa13.14□□□□□ -0.31
COL6A1-207ENST00000612273 OR4N4Q8N0Y3 316 aa13.14□□□□□ -0.31
COL6A1-207ENST00000612273 MS4A6EQ96DS6 147 aa13.14□□□□□ -0.31
COL6A1-207ENST00000612273 FAM83CQ9BQN1 747 aa13.14□□□□□ -0.31
COL6A1-207ENST00000612273 ACSS1Q9NUB1 689 aaPredicted RBP13.14□□□□□ -0.31
COL6A1-207ENST00000612273 USP36Q9P275 1121 aaKnown RBP13.14□□□□□ -0.31
COL6A1-207ENST00000612273 NFKBIL1Q9UBC1 381 aaPredicted RBP13.14□□□□□ -0.31
COL6A1-207ENST00000612273 DPP7Q9UHL4 492 aa13.14□□□□□ -0.31
COL6A1-207ENST00000612273 EDDM13A0A1B0GTR0 161 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 ARHGEF9O43307 516 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 OR2B3O76000 313 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 THY1P04216 161 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 RPN2P04844 631 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 ATP5A1P25705 553 aaKnown RBP13.13□□□□□ -0.31
COL6A1-207ENST00000612273 PRR5P85299 388 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 FAPQ12884 760 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 MZT2BQ6NZ67 158 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 MTSS1LQ765P7 747 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 HDDC3Q8N4P3 179 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 OR6C4Q8NGE1 309 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 GNPDA2Q8TDQ7 276 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 SLC35A4Q96G79 324 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 SLC41A3Q96GZ6 507 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 ABCG5Q9H222 651 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 C20orf141Q9NUB4 165 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 MAT2BQ9NZL9 334 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 ZNF780BQ9Y6R6 833 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 SPTBN5Q9NRC6 3674 aaKnown RBP13.13□□□□□ -0.31
COL6A1-207ENST00000612273 ZNF106Q9H2Y7 1883 aaKnown RBP13.13□□□□□ -0.31
COL6A1-207ENST00000612273 TRAV27A0A087WT01 109 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 A0A1W2PRG6 482 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 PSMD9O00233 223 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 AKAP8O43823 692 aaKnown RBP13.13□□□□□ -0.31
COL6A1-207ENST00000612273 CD3GP09693 182 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 AK4P27144 223 aaPredicted RBP13.13□□□□□ -0.31
COL6A1-207ENST00000612273 MPIP34949 423 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 BNC1Q01954 994 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 ZNF155Q12901 538 aaPredicted RBP13.13□□□□□ -0.31
COL6A1-207ENST00000612273 TSPAN31Q12999 210 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 CXXC5Q7LFL8 322 aaKnown RBP13.13□□□□□ -0.31
COL6A1-207ENST00000612273 OR10G6Q8NH81 332 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 PIGKQ92643 395 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 RNF170Q96K19 258 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 DHRS1Q96LJ7 313 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 TMEM74BQ9NUR3 256 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 RBFOX1Q9NWB1 397 aaKnown RBP13.13□□□□□ -0.31
COL6A1-207ENST00000612273 APOBEC3BQ9UH17 382 aaKnown RBP13.13□□□□□ -0.31
COL6A1-207ENST00000612273 NDOR1Q9UHB4 597 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 RASD1Q9Y272 281 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 WDR45Q9Y484 360 aa13.13□□□□□ -0.31
COL6A1-207ENST00000612273 DAPL1A0PJW8 107 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 LDB3O75112 727 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 TOXO94900 526 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 ARSBP15848 533 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 GSTM3P21266 225 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 EVX1P49640 407 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 AGFG1P52594 562 aaKnown RBP13.12□□□□□ -0.31
COL6A1-207ENST00000612273 PPP3R1P63098 170 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 E2F1Q01094 437 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 SRSF5Q13243 272 aaKnown RBP13.12□□□□□ -0.31
COL6A1-207ENST00000612273 TMEM31Q5JXX7 168 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 ABHD17CQ6PCB6 329 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 GET4Q7L5D6 327 aaPredicted RBP13.12□□□□□ -0.31
COL6A1-207ENST00000612273 GDF7Q7Z4P5 450 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 OR8H1Q8NGG4 311 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 GCDHQ92947 438 aaPredicted RBP13.12□□□□□ -0.31
COL6A1-207ENST00000612273 HHIPL1Q96JK4 782 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 POLMQ9NP87 494 aaPredicted RBP13.12□□□□□ -0.31
COL6A1-207ENST00000612273 SLC6A20Q9NP91 592 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 NUDT15Q9NV35 164 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 NPAP1Q9NZP6 1156 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 SLC9A3R1O14745 358 aaPredicted RBP13.12□□□□□ -0.31
COL6A1-207ENST00000612273 FCER2P06734 321 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 NOS3P29474 1203 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 IFNGR2P38484 337 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 OMPP47874 163 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 RAB28P51157 221 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 DSG2Q14126 1118 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 NDUFA9Q16795 377 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 TMEM91Q6ZNR0 172 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 SIX5Q8N196 739 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 OR7G2Q8NG99 324 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 OR14C36Q8NHC7 312 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 GRPEL2Q8TAA5 225 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 ELP4Q96EB1 424 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 CHFRQ96EP1 664 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 DNAJA3Q96EY1 480 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 MENTQ9BUN1 341 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 PPP1R3EQ9H7J1 279 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 PRSS16Q9NQE7 514 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 EXOSC1Q9Y3B2 195 aaKnown RBP13.12□□□□□ -0.31
COL6A1-207ENST00000612273 TMEM129A0AVI4 362 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 LRRC72A6NJI9 287 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 ZSWIM7Q19AV6 140 aa13.12□□□□□ -0.31
COL6A1-207ENST00000612273 TRMT12Q53H54 448 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms