RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 SIPA1Q96FS4 1042 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 PAWRQ96IZ0 340 aaKnown RBP17.17■□□□□ 0.34
UPF1-210ENST00000600689 LMLNQ96KR4 655 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 GSDMCQ9BYG8 508 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 METTL17Q9H7H0 456 aaPredicted RBP17.17■□□□□ 0.34
UPF1-210ENST00000600689 HEXA-AS1Q9H8Q6 139 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 FGF20Q9NP95 211 aaPredicted RBP17.17■□□□□ 0.34
UPF1-210ENST00000600689 ZC4H2Q9NQZ6 224 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 NUP50Q9UKX7 468 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 FOXE1O00358 373 aaPredicted RBP17.17■□□□□ 0.34
UPF1-210ENST00000600689 PAICSP22234 425 aaKnown RBP17.17■□□□□ 0.34
UPF1-210ENST00000600689 ACSL1P33121 698 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 EOGTQ5NDL2 527 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 C1orf94Q6P1W5 598 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 CEACAM19Q7Z692 300 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 ORAI1Q96D31 301 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 SAMD8Q96LT4 415 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 HINT3Q9NQE9 182 aaKnown RBP17.17■□□□□ 0.34
UPF1-210ENST00000600689 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.17■□□□□ 0.34
UPF1-210ENST00000600689 SZT2Q5T011 3432 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 SLC9B1P1A6NJY1 282 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 H3BUI4 141 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 LINC00271P0C7V0 271 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 AHCYP23526 432 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 PNLIPRP1P54315 467 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 MPP7Q5T2T1 576 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 ANKRD53Q8N9V6 530 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 BBS4Q96RK4 519 aa17.17■□□□□ 0.34
UPF1-210ENST00000600689 RANBP3Q9H6Z4 567 aaPredicted RBP17.17■□□□□ 0.34
UPF1-210ENST00000600689 OR1F1O43749 312 aa17.16■□□□□ 0.34
UPF1-210ENST00000600689 HPXP02790 462 aa17.16■□□□□ 0.34
UPF1-210ENST00000600689 TPOP07202 933 aa17.16■□□□□ 0.34
UPF1-210ENST00000600689 TRHRP34981 398 aaPredicted RBP17.16■□□□□ 0.34
UPF1-210ENST00000600689 E2F1Q01094 437 aa17.16■□□□□ 0.34
UPF1-210ENST00000600689 GHITMQ9H3K2 345 aa17.16■□□□□ 0.34
UPF1-210ENST00000600689 PTPRSQ13332 1948 aa17.16■□□□□ 0.34
UPF1-210ENST00000600689 A0A1W2PRG6 482 aa17.16■□□□□ 0.34
UPF1-210ENST00000600689 RNF13O43567 381 aa17.16■□□□□ 0.34
UPF1-210ENST00000600689 SLC19A2O60779 497 aa17.16■□□□□ 0.34
UPF1-210ENST00000600689 HMGN2P05204 90 aaKnown RBP17.16■□□□□ 0.34
UPF1-210ENST00000600689 TCEA2Q15560 299 aa17.16■□□□□ 0.34
UPF1-210ENST00000600689 TEAD2Q15562 447 aa17.16■□□□□ 0.34
UPF1-210ENST00000600689 ZNF311Q5JNZ3 666 aa17.16■□□□□ 0.34
UPF1-210ENST00000600689 HENMT1Q5T8I9 393 aaKnown RBP17.16■□□□□ 0.34
UPF1-210ENST00000600689 ZNF322Q6U7Q0 402 aaPredicted RBP17.16■□□□□ 0.34
UPF1-210ENST00000600689 METAP1DQ6UB28 335 aaPredicted RBP17.16■□□□□ 0.34
UPF1-210ENST00000600689 OR5M3Q8NGP4 307 aa17.16■□□□□ 0.34
UPF1-210ENST00000600689 OR8K5Q8NH50 307 aa17.16■□□□□ 0.34
UPF1-210ENST00000600689 GANCQ8TET4 914 aa17.16■□□□□ 0.34
UPF1-210ENST00000600689 GLIPR2Q9H4G4 154 aa17.16■□□□□ 0.34
UPF1-210ENST00000600689 UBQLN2Q9UHD9 624 aa17.16■□□□□ 0.34
UPF1-210ENST00000600689 LINC00862A6NCI5 91 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 J3QLW9 94 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 TIMP2P16035 220 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 ZNF19P17023 458 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 SELENOPP49908 381 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 MAP2K6P52564 334 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 TMEM107Q6UX40 140 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 RBP7Q96R05 134 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 FUZQ9BT04 418 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 PLXNB3Q9ULL4 1909 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 LGALS8O00214 317 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 SCAMP1O15126 338 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 EFCAB14O75071 495 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 FZD7O75084 574 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 TBX6O95947 436 aaPredicted RBP17.15■□□□□ 0.34
UPF1-210ENST00000600689 GYPBP06028 91 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 ANKRD34CP0C6C1 535 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 PRLHRP49683 370 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 TSPAN5P62079 268 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 KHDRBS2Q5VWX1 349 aaKnown RBP17.15■□□□□ 0.34
UPF1-210ENST00000600689 PLPP4Q5VZY2 271 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 CD200R1LQ6Q8B3 271 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 ZNF782Q6ZMW2 699 aaPredicted RBP17.15■□□□□ 0.34
UPF1-210ENST00000600689 SPRED2Q7Z698 418 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 PLA2G15Q8NCC3 412 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 TMEM255BQ8WV15 326 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 DDOQ99489 341 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 ALG8Q9BVK2 526 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 AUNIPQ9H7T9 357 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 AHSPQ9NZD4 102 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 HS3ST2Q9Y278 367 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 ZNF106Q9H2Y7 1883 aaKnown RBP17.15■□□□□ 0.34
UPF1-210ENST00000600689 SIGLEC5O15389 551 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 POP7O75817 140 aaKnown RBP17.15■□□□□ 0.34
UPF1-210ENST00000600689 TIMP1P01033 207 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 PPM1AP35813 382 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 CLCNKAP51800 687 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 NTHL1P78549 312 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 SIGLEC14Q08ET2 396 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 MFSD13AQ14CX5 517 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 GRK1Q15835 563 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 TMEM215Q68D42 235 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 SFXN4Q6P4A7 337 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 TRAM1L1Q8N609 369 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 PRRC1Q96M27 445 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 CRISPLD2Q9H0B8 497 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 BTBD1Q9H0C5 482 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 ZDHHC4Q9NPG8 344 aa17.15■□□□□ 0.34
UPF1-210ENST00000600689 HCN3Q9P1Z3 774 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms