RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 VDAC3Q9Y277 283 aa8.84□□□□□ -0.99
VRK3-216ENST00000599342 TMED5Q9Y3A6 229 aa8.84□□□□□ -0.99
VRK3-216ENST00000599342 ZNF337Q9Y3M9 751 aa8.84□□□□□ -0.99
VRK3-216ENST00000599342 ZNF175Q9Y473 711 aa8.84□□□□□ -0.99
VRK3-216ENST00000599342 TESMINQ9Y4I5 508 aa8.84□□□□□ -0.99
VRK3-216ENST00000599342 AP4B1Q9Y6B7 739 aa8.84□□□□□ -0.99
VRK3-216ENST00000599342 TACC2O95359 2948 aa8.83□□□□□ -1
VRK3-216ENST00000599342 MED13LQ71F56 2210 aa8.83□□□□□ -1
VRK3-216ENST00000599342 IGLV3-32A0A0A0MS00 114 aa8.83□□□□□ -1
VRK3-216ENST00000599342 TLDC2A0PJX2 215 aa8.83□□□□□ -1
VRK3-216ENST00000599342 TMEM114B3SHH9 223 aa8.83□□□□□ -1
VRK3-216ENST00000599342 H0YC42 278 aa8.83□□□□□ -1
VRK3-216ENST00000599342 LSM1O15116 133 aaKnown RBP8.83□□□□□ -1
VRK3-216ENST00000599342 NDUFB5O43674 189 aa8.83□□□□□ -1
VRK3-216ENST00000599342 TBX19O60806 448 aa8.83□□□□□ -1
VRK3-216ENST00000599342 NKX2-2O95096 273 aa8.83□□□□□ -1
VRK3-216ENST00000599342 POU2F1P14859 743 aa8.83□□□□□ -1
VRK3-216ENST00000599342 MAPK1P28482 360 aa8.83□□□□□ -1
VRK3-216ENST00000599342 HPCAL1P37235 193 aa8.83□□□□□ -1
VRK3-216ENST00000599342 CD79BP40259 229 aa8.83□□□□□ -1
VRK3-216ENST00000599342 ASMTP46597 345 aa8.83□□□□□ -1
VRK3-216ENST00000599342 PRIM2P49643 509 aa8.83□□□□□ -1
VRK3-216ENST00000599342 ZNF41P51814 821 aaPredicted RBP8.83□□□□□ -1
VRK3-216ENST00000599342 SUCLG1P53597 346 aaKnown RBP8.83□□□□□ -1
VRK3-216ENST00000599342 TPD52P55327 224 aaPredicted RBP8.83□□□□□ -1
VRK3-216ENST00000599342 CLDN20P56880 219 aa8.83□□□□□ -1
VRK3-216ENST00000599342 SLC18A2Q05940 514 aa8.83□□□□□ -1
VRK3-216ENST00000599342 FAM27E3Q08E93 113 aa8.83□□□□□ -1
VRK3-216ENST00000599342 FOXD4Q12950 439 aaPredicted RBP8.83□□□□□ -1
VRK3-216ENST00000599342 RFTN2Q52LD8 501 aaPredicted RBP8.83□□□□□ -1
VRK3-216ENST00000599342 ZNF385BQ569K4 471 aa8.83□□□□□ -1
VRK3-216ENST00000599342 KANK2Q63ZY3 851 aa8.83□□□□□ -1
VRK3-216ENST00000599342 Q6ZSR9 355 aa8.83□□□□□ -1
VRK3-216ENST00000599342 R3HCC1LQ7Z5L2 792 aaKnown RBP8.83□□□□□ -1
VRK3-216ENST00000599342 GALNT10Q86SR1 603 aa8.83□□□□□ -1
VRK3-216ENST00000599342 METTL25Q8N6Q8 603 aa8.83□□□□□ -1
VRK3-216ENST00000599342 LRRN4CLQ8ND94 238 aa8.83□□□□□ -1
VRK3-216ENST00000599342 OR2T11Q8NH01 316 aa8.83□□□□□ -1
VRK3-216ENST00000599342 FBXO30Q8TB52 745 aa8.83□□□□□ -1
VRK3-216ENST00000599342 FNDC9Q8TBE3 224 aa8.83□□□□□ -1
VRK3-216ENST00000599342 TWIST2Q8WVJ9 160 aa8.83□□□□□ -1
VRK3-216ENST00000599342 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.83□□□□□ -1
VRK3-216ENST00000599342 JADE3Q92613 823 aa8.83□□□□□ -1
VRK3-216ENST00000599342 STARD4Q96DR4 205 aa8.83□□□□□ -1
VRK3-216ENST00000599342 CHMP6Q96FZ7 201 aa8.83□□□□□ -1
VRK3-216ENST00000599342 APOPT1Q96IL0 206 aa8.83□□□□□ -1
VRK3-216ENST00000599342 FCRL1Q96LA6 429 aa8.83□□□□□ -1
VRK3-216ENST00000599342 MED18Q9BUE0 208 aa8.83□□□□□ -1
VRK3-216ENST00000599342 GATA5Q9BWX5 397 aaPredicted RBP8.83□□□□□ -1
VRK3-216ENST00000599342 PRRG4Q9BZD6 226 aa8.83□□□□□ -1
VRK3-216ENST00000599342 RTN4RQ9BZR6 473 aa8.83□□□□□ -1
VRK3-216ENST00000599342 OPN3Q9H1Y3 402 aaPredicted RBP8.83□□□□□ -1
VRK3-216ENST00000599342 RNF122Q9H9V4 155 aa8.83□□□□□ -1
VRK3-216ENST00000599342 EML4Q9HC35 981 aaKnown RBP8.83□□□□□ -1
VRK3-216ENST00000599342 NEUROD4Q9HD90 331 aa8.83□□□□□ -1
VRK3-216ENST00000599342 ACSS1Q9NUB1 689 aaPredicted RBP8.83□□□□□ -1
VRK3-216ENST00000599342 ELOVL5Q9NYP7 299 aa8.83□□□□□ -1
VRK3-216ENST00000599342 DNAJC15Q9Y5T4 150 aa8.83□□□□□ -1
VRK3-216ENST00000599342 A0A087WZY1 265 aa8.82□□□□□ -1
VRK3-216ENST00000599342 ALG1L2C9J202 215 aa8.82□□□□□ -1
VRK3-216ENST00000599342 SCDO00767 359 aa8.82□□□□□ -1
VRK3-216ENST00000599342 EIF1AYO14602 144 aaKnown RBP8.82□□□□□ -1
VRK3-216ENST00000599342 EMC8O43402 210 aa8.82□□□□□ -1
VRK3-216ENST00000599342 NPHS1O60500 1241 aa8.82□□□□□ -1
VRK3-216ENST00000599342 OXSR1O95747 527 aaPredicted RBP8.82□□□□□ -1
VRK3-216ENST00000599342 PLGP00747 810 aaPredicted RBP8.82□□□□□ -1
VRK3-216ENST00000599342 IGKV1D-16P01601 117 aa8.82□□□□□ -1
VRK3-216ENST00000599342 CHRNGP07510 517 aa8.82□□□□□ -1
VRK3-216ENST00000599342 NGFRP08138 427 aa8.82□□□□□ -1
VRK3-216ENST00000599342 ALOX5P09917 674 aa8.82□□□□□ -1
VRK3-216ENST00000599342 ZNF17P17021 662 aa8.82□□□□□ -1
VRK3-216ENST00000599342 RPL3P39023 403 aaKnown RBP8.82□□□□□ -1
VRK3-216ENST00000599342 FRKP42685 505 aaPredicted RBP8.82□□□□□ -1
VRK3-216ENST00000599342 KIR2DL2P43627 348 aaPredicted RBP8.82□□□□□ -1
VRK3-216ENST00000599342 EIF1AXP47813 144 aaKnown RBP8.82□□□□□ -1
VRK3-216ENST00000599342 SERPINB4P48594 390 aa8.82□□□□□ -1
VRK3-216ENST00000599342 PCYT1AP49585 367 aa8.82□□□□□ -1
VRK3-216ENST00000599342 CLDN15P56746 228 aa8.82□□□□□ -1
VRK3-216ENST00000599342 ADAM8P78325 824 aa8.82□□□□□ -1
VRK3-216ENST00000599342 OCRLQ01968 901 aa8.82□□□□□ -1
VRK3-216ENST00000599342 IFFO1Q0D2I5 559 aa8.82□□□□□ -1
VRK3-216ENST00000599342 PDE7AQ13946 482 aa8.82□□□□□ -1
VRK3-216ENST00000599342 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.82□□□□□ -1
VRK3-216ENST00000599342 MFSD12Q6NUT3 480 aa8.82□□□□□ -1
VRK3-216ENST00000599342 ZCCHC12Q6PEW1 402 aa8.82□□□□□ -1
VRK3-216ENST00000599342 FIGNL1Q6PIW4 674 aa8.82□□□□□ -1
VRK3-216ENST00000599342 LRIG3Q6UXM1 1119 aa8.82□□□□□ -1
VRK3-216ENST00000599342 APOOLQ6UXV4 268 aa8.82□□□□□ -1
VRK3-216ENST00000599342 BTLAQ7Z6A9 289 aa8.82□□□□□ -1
VRK3-216ENST00000599342 EXOC3L1Q86VI1 746 aa8.82□□□□□ -1
VRK3-216ENST00000599342 MISPQ8IVT2 679 aa8.82□□□□□ -1
VRK3-216ENST00000599342 RIBC1Q8N443 379 aaPredicted RBP8.82□□□□□ -1
VRK3-216ENST00000599342 COX18Q8N8Q8 333 aa8.82□□□□□ -1
VRK3-216ENST00000599342 GATSQ8NAP1 163 aa8.82□□□□□ -1
VRK3-216ENST00000599342 OR6Y1Q8NGX8 325 aa8.82□□□□□ -1
VRK3-216ENST00000599342 AGR3Q8TD06 166 aa8.82□□□□□ -1
VRK3-216ENST00000599342 HOXB13Q92826 284 aaPredicted RBP8.82□□□□□ -1
VRK3-216ENST00000599342 ZBTB8AQ96BR9 441 aa8.82□□□□□ -1
VRK3-216ENST00000599342 MTERF3Q96E29 417 aa8.82□□□□□ -1
VRK3-216ENST00000599342 PPP3R2Q96LZ3 170 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms