RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 CLK3P49761 638 aaKnown RBP18.48■□□□□ 0.55
SHMT1-209ENST00000582653 SUCLG1P53597 346 aaKnown RBP18.48■□□□□ 0.55
SHMT1-209ENST00000582653 DIO3P55073 304 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 CLDN15P56746 228 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 PDE7AQ13946 482 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 GRAMD1BQ3KR37 738 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 NUP43Q8NFH3 380 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 SLC9A6Q92581 669 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 GIMAP5Q96F15 307 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 ZBED6CLQ96FA7 236 aaPredicted RBP18.48■□□□□ 0.55
SHMT1-209ENST00000582653 OTUB1Q96FW1 271 aaPredicted RBP18.48■□□□□ 0.55
SHMT1-209ENST00000582653 C16orf58Q96GQ5 468 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 ZNF764Q96H86 408 aaPredicted RBP18.48■□□□□ 0.55
SHMT1-209ENST00000582653 YIPF4Q9BSR8 244 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 C3orf14Q9HBI5 128 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 NF1P21359 2839 aa18.48■□□□□ 0.55
SHMT1-209ENST00000582653 HRNRQ86YZ3 2850 aaPredicted RBP18.48■□□□□ 0.55
SHMT1-209ENST00000582653 TNFSF12-TNFSF13A0A0A6YY99 330 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 LINC01387J3KSC0 135 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 PEX11AO75192 247 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 TNFSF13O75888 250 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 NKX2-2O95096 273 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 ANGPTL1O95841 491 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 ACP2P11117 423 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 CPA2P48052 419 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 PCYT1AP49585 367 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 PSMD4P55036 377 aaKnown RBP18.47■□□□□ 0.55
SHMT1-209ENST00000582653 ADAM8P78325 824 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 KEAP1Q14145 624 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 KRTAP21-3Q3LHN1 58 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 OR2A2Q6IF42 318 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 CHMP1BQ7LBR1 199 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 SLC16A11Q8NCK7 471 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 OR4C3Q8NH37 302 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 ZFP28Q8NHY6 868 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 AENQ8WTP8 325 aaKnown RBP18.47■□□□□ 0.55
SHMT1-209ENST00000582653 NUDT8Q8WV74 236 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 HOXB13Q92826 284 aaPredicted RBP18.47■□□□□ 0.55
SHMT1-209ENST00000582653 C1GALT1C1Q96EU7 318 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 C3orf30Q96M34 536 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 TBL1XR1Q9BZK7 514 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 PTGES2Q9H7Z7 377 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 EML4Q9HC35 981 aaKnown RBP18.47■□□□□ 0.55
SHMT1-209ENST00000582653 NDRG3Q9UGV2 375 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 PACSIN3Q9UKS6 424 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 TMED5Q9Y3A6 229 aa18.47■□□□□ 0.55
SHMT1-209ENST00000582653 AKAP6Q13023 2319 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 OR2M5A3KFT3 312 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 SHISA8B8ZZ34 492 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 H3BML4 177 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 MSTNO14793 375 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 CASKO14936 926 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 DIAPH2O60879 1101 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 ATE1O95260 518 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 SLU7O95391 586 aaKnown RBP18.46■□□□□ 0.55
SHMT1-209ENST00000582653 HRGP04196 525 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 EEFSECP57772 596 aaKnown RBP18.46■□□□□ 0.55
SHMT1-209ENST00000582653 C17orf67Q0P5P2 114 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 DEFB113Q30KQ7 82 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 FIGNL1Q6PIW4 674 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 P4HA3Q7Z4N8 544 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 ZAR1Q86SH2 424 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 CDRT4Q8N9R6 151 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 OR7A2PQ8NGA2 310 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 CEP70Q8NHQ1 597 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 FIG4Q92562 907 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 STARD4Q96DR4 205 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 ROPN1BQ9BZX4 212 aaPredicted RBP18.46■□□□□ 0.55
SHMT1-209ENST00000582653 ROPN1Q9HAT0 212 aaPredicted RBP18.46■□□□□ 0.55
SHMT1-209ENST00000582653 ACSS1Q9NUB1 689 aaPredicted RBP18.46■□□□□ 0.55
SHMT1-209ENST00000582653 FBXO34Q9NWN3 711 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 NTMQ9P121 344 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.46■□□□□ 0.55
SHMT1-209ENST00000582653 ZDHHC2Q9UIJ5 367 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 V9GYY5 206 aaPredicted RBP18.46■□□□□ 0.55
SHMT1-209ENST00000582653 MTORP42345 2549 aa18.46■□□□□ 0.55
SHMT1-209ENST00000582653 A0A1W2PNV4 684 aa18.45■□□□□ 0.54
SHMT1-209ENST00000582653 SH3D21A4FU49 640 aa18.45■□□□□ 0.54
SHMT1-209ENST00000582653 TTC36A6NLP5 189 aa18.45■□□□□ 0.54
SHMT1-209ENST00000582653 SEC14L5O43304 696 aa18.45■□□□□ 0.54
SHMT1-209ENST00000582653 EMC8O43402 210 aa18.45■□□□□ 0.54
SHMT1-209ENST00000582653 TNFRSF21O75509 655 aa18.45■□□□□ 0.54
SHMT1-209ENST00000582653 FOSL1P15407 271 aa18.45■□□□□ 0.54
SHMT1-209ENST00000582653 ASMTP46597 345 aa18.45■□□□□ 0.54
SHMT1-209ENST00000582653 CLDN20P56880 219 aa18.45■□□□□ 0.54
SHMT1-209ENST00000582653 PRR5P85299 388 aa18.45■□□□□ 0.54
SHMT1-209ENST00000582653 FOXD4Q12950 439 aaPredicted RBP18.45■□□□□ 0.54
SHMT1-209ENST00000582653 GANABQ14697 944 aaKnown RBP18.45■□□□□ 0.54
SHMT1-209ENST00000582653 DUSP5Q16690 384 aa18.45■□□□□ 0.54
SHMT1-209ENST00000582653 GLYR1Q49A26 553 aaPredicted RBP18.45■□□□□ 0.54
SHMT1-209ENST00000582653 VPS26BQ4G0F5 336 aa18.45■□□□□ 0.54
SHMT1-209ENST00000582653 MEIOBQ8N635 442 aa18.45■□□□□ 0.54
SHMT1-209ENST00000582653 SMPDL3BQ92485 455 aa18.45■□□□□ 0.54
SHMT1-209ENST00000582653 MTERF3Q96E29 417 aa18.45■□□□□ 0.54
SHMT1-209ENST00000582653 PCNX3Q9H6A9 2034 aa18.45■□□□□ 0.54
SHMT1-209ENST00000582653 SLC22A20A6NK97 555 aa18.44■□□□□ 0.54
SHMT1-209ENST00000582653 KCNK2O95069 426 aa18.44■□□□□ 0.54
SHMT1-209ENST00000582653 XKR7Q5GH72 579 aa18.44■□□□□ 0.54
SHMT1-209ENST00000582653 MFSD12Q6NUT3 480 aa18.44■□□□□ 0.54
SHMT1-209ENST00000582653 GATSQ8NAP1 163 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms