RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 SEC14L3Q9UDX4 400 aa17.84■□□□□ 0.45
CLN3-225ENST00000566824 LEF1Q9UJU2 399 aaPredicted RBP17.84■□□□□ 0.45
CLN3-225ENST00000566824 FBXL2Q9UKC9 423 aa17.84■□□□□ 0.45
CLN3-225ENST00000566824 C15orf41Q9Y2V0 281 aa17.84■□□□□ 0.45
CLN3-225ENST00000566824 ANKUB1A6NFN9 424 aa17.83■□□□□ 0.44
CLN3-225ENST00000566824 NPIPB9F8W1W9 429 aa17.83■□□□□ 0.44
CLN3-225ENST00000566824 CDC40O60508 579 aaKnown RBP eCLIP17.83■□□□□ 0.44
CLN3-225ENST00000566824 NUDT7P0C024 238 aa17.83■□□□□ 0.44
CLN3-225ENST00000566824 TBXA2RP21731 343 aa17.83■□□□□ 0.44
CLN3-225ENST00000566824 MASP1P48740 699 aa17.83■□□□□ 0.44
CLN3-225ENST00000566824 PSMD4P55036 377 aaKnown RBP17.83■□□□□ 0.44
CLN3-225ENST00000566824 EIF2S3LQ2VIR3 472 aaKnown RBP17.83■□□□□ 0.44
CLN3-225ENST00000566824 GFRALQ6UXV0 394 aa17.83■□□□□ 0.44
CLN3-225ENST00000566824 PIGWQ7Z7B1 504 aa17.83■□□□□ 0.44
CLN3-225ENST00000566824 SLC22A16Q86VW1 577 aa17.83■□□□□ 0.44
CLN3-225ENST00000566824 SNX32Q86XE0 403 aa17.83■□□□□ 0.44
CLN3-225ENST00000566824 TREML1Q86YW5 311 aa17.83■□□□□ 0.44
CLN3-225ENST00000566824 SPPL2CQ8IUH8 684 aa17.83■□□□□ 0.44
CLN3-225ENST00000566824 FAM109AQ8N4B1 249 aa17.83■□□□□ 0.44
CLN3-225ENST00000566824 ROPN1LQ96C74 230 aa17.83■□□□□ 0.44
CLN3-225ENST00000566824 G6PC3Q9BUM1 346 aa17.83■□□□□ 0.44
CLN3-225ENST00000566824 UBQLN3Q9H347 655 aa17.83■□□□□ 0.44
CLN3-225ENST00000566824 MKLN1Q9UL63 735 aa17.83■□□□□ 0.44
CLN3-225ENST00000566824 NDUFAF1Q9Y375 327 aa17.83■□□□□ 0.44
CLN3-225ENST00000566824 LOC100653049A0A140TA62 436 aa17.82■□□□□ 0.44
CLN3-225ENST00000566824 DUXAA6NLW8 204 aa17.82■□□□□ 0.44
CLN3-225ENST00000566824 CLIC1O00299 241 aa17.82■□□□□ 0.44
CLN3-225ENST00000566824 OIP5O43482 229 aa17.82■□□□□ 0.44
CLN3-225ENST00000566824 KRT34O76011 436 aa17.82■□□□□ 0.44
CLN3-225ENST00000566824 KRT75O95678 551 aa17.82■□□□□ 0.44
CLN3-225ENST00000566824 SELPLGQ14242 412 aa17.82■□□□□ 0.44
CLN3-225ENST00000566824 CD226Q15762 336 aa17.82■□□□□ 0.44
CLN3-225ENST00000566824 C16orf62Q7Z3J2 963 aa17.82■□□□□ 0.44
CLN3-225ENST00000566824 DPP10Q8N608 796 aa17.82■□□□□ 0.44
CLN3-225ENST00000566824 POU5F2Q8N7G0 328 aa17.82■□□□□ 0.44
CLN3-225ENST00000566824 OR1J4Q8NGS1 313 aa17.82■□□□□ 0.44
CLN3-225ENST00000566824 DUSP19Q8WTR2 217 aa17.82■□□□□ 0.44
CLN3-225ENST00000566824 ZG16BQ96DA0 208 aa17.82■□□□□ 0.44
CLN3-225ENST00000566824 CCDC106Q9BWC9 280 aa17.82■□□□□ 0.44
CLN3-225ENST00000566824 NSRP1Q9H0G5 558 aaKnown RBP17.82■□□□□ 0.44
CLN3-225ENST00000566824 MYLK2Q9H1R3 596 aa17.82■□□□□ 0.44
CLN3-225ENST00000566824 SLC6A15Q9H2J7 730 aa17.82■□□□□ 0.44
CLN3-225ENST00000566824 TNFRSF10DQ9UBN6 386 aa17.82■□□□□ 0.44
CLN3-225ENST00000566824 ABCG2Q9UNQ0 655 aa17.82■□□□□ 0.44
CLN3-225ENST00000566824 PCDHGB3Q9Y5G1 929 aa17.82■□□□□ 0.44
CLN3-225ENST00000566824 A0A1B0GTH9 108 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 ACOT7O00154 380 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 ANGPT2O15123 496 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 ANGPTL1O95841 491 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 NGFRP08138 427 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 CHRM4P08173 479 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 GDF1P27539 372 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 DCTP40126 519 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 CRATP43155 626 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 CAPRIN1Q14444 709 aaKnown RBP17.81■□□□□ 0.44
CLN3-225ENST00000566824 GPR68Q15743 365 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 MAPK14Q16539 360 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 FLYWCH1Q4VC44 716 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 EIPR1Q53HC9 387 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 TYW3Q6IPR3 259 aaKnown RBP17.81■□□□□ 0.44
CLN3-225ENST00000566824 FRRS1Q6ZNA5 592 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 DHDDSQ86SQ9 333 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 ATCAYQ86WG3 371 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 PLCZ1Q86YW0 608 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 TSPEARQ8WU66 669 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 CPPED1Q9BRF8 314 aaPredicted RBP17.81■□□□□ 0.44
CLN3-225ENST00000566824 TBL1XR1Q9BZK7 514 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 ZNF350Q9GZX5 532 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 DSN1Q9H410 356 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 RUBCNLQ9H714 662 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 UBQLN4Q9NRR5 601 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 PLSCR2Q9NRY7 297 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 EXD2Q9NVH0 621 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 MED11Q9P086 117 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 ADAM21Q9UKJ8 722 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 CAPN7Q9Y6W3 813 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 HEATR5AQ86XA9 2040 aa17.81■□□□□ 0.44
CLN3-225ENST00000566824 USP9XQ93008 2570 aaPredicted RBP17.81■□□□□ 0.44
CLN3-225ENST00000566824 ALG1L2C9J202 215 aa17.8■□□□□ 0.44
CLN3-225ENST00000566824 GMFGO60234 142 aa17.8■□□□□ 0.44
CLN3-225ENST00000566824 SHOX2O60902 331 aaPredicted RBP17.8■□□□□ 0.44
CLN3-225ENST00000566824 WISP1O95388 367 aa17.8■□□□□ 0.44
CLN3-225ENST00000566824 H6PDO95479 791 aa17.8■□□□□ 0.44
CLN3-225ENST00000566824 ENDOUP21128 410 aaKnown RBP17.8■□□□□ 0.44
CLN3-225ENST00000566824 ATP6V1C1P21283 382 aa17.8■□□□□ 0.44
CLN3-225ENST00000566824 CHRNEQ04844 493 aa17.8■□□□□ 0.44
CLN3-225ENST00000566824 SLC10A1Q14973 349 aa17.8■□□□□ 0.44
CLN3-225ENST00000566824 RGNQ15493 299 aa17.8■□□□□ 0.44
CLN3-225ENST00000566824 NDUFAF6Q330K2 333 aa17.8■□□□□ 0.44
CLN3-225ENST00000566824 KLHL26Q53HC5 615 aa17.8■□□□□ 0.44
CLN3-225ENST00000566824 KRTCAP3Q53RY4 240 aa17.8■□□□□ 0.44
CLN3-225ENST00000566824 RUNDC3AQ59EK9 446 aa17.8■□□□□ 0.44
CLN3-225ENST00000566824 REP15Q6BDI9 236 aa17.8■□□□□ 0.44
CLN3-225ENST00000566824 FADS6Q8N9I5 356 aa17.8■□□□□ 0.44
CLN3-225ENST00000566824 OR2M3Q8NG83 312 aa17.8■□□□□ 0.44
CLN3-225ENST00000566824 CCT8L2Q96SF2 557 aa17.8■□□□□ 0.44
CLN3-225ENST00000566824 QRSL1Q9H0R6 528 aaKnown RBP17.8■□□□□ 0.44
CLN3-225ENST00000566824 PPP4R1LQ9P1A2 415 aa17.8■□□□□ 0.44
CLN3-225ENST00000566824 OSGIN2Q9Y236 505 aa17.8■□□□□ 0.44
CLN3-225ENST00000566824 TNFRSF21O75509 655 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms