RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 CHI3L2Q15782 390 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 MFSD12Q6NUT3 480 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 FIGNL1Q6PIW4 674 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 APOOLQ6UXV4 268 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 P4HA3Q7Z4N8 544 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 ADGRE4PQ86SQ3 457 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 KIF18BQ86Y91 864 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 GRAMD2AQ8IUY3 354 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 OR5M1Q8NGP8 315 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 OR4C3Q8NH37 302 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 JADE3Q92613 823 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 CHMP6Q96FZ7 201 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 ZFP3Q96NJ6 502 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 G6PC3Q9BUM1 346 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 KCNK9Q9NPC2 374 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 ZCCHC3Q9NUD5 404 aaKnown RBP18.76■□□□□ 0.59
CLN3-219ENST00000565778 ATAD3AQ9NVI7 634 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 CRIM1Q9NZV1 1036 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 ZNF337Q9Y3M9 751 aa18.76■□□□□ 0.59
CLN3-219ENST00000565778 ITM2AO43736 263 aa18.75■□□□□ 0.59
CLN3-219ENST00000565778 KCNK2O95069 426 aa18.75■□□□□ 0.59
CLN3-219ENST00000565778 POU3F2P20265 443 aaPredicted RBP18.75■□□□□ 0.59
CLN3-219ENST00000565778 DUSP5Q16690 384 aa18.75■□□□□ 0.59
CLN3-219ENST00000565778 LSM12Q3MHD2 195 aaKnown RBP18.75■□□□□ 0.59
CLN3-219ENST00000565778 CEP85LQ5SZL2 805 aa18.75■□□□□ 0.59
CLN3-219ENST00000565778 MEIOBQ8N635 442 aa18.75■□□□□ 0.59
CLN3-219ENST00000565778 NATD1Q8N6N6 113 aa18.75■□□□□ 0.59
CLN3-219ENST00000565778 GOT1L1Q8NHS2 421 aaPredicted RBP18.75■□□□□ 0.59
CLN3-219ENST00000565778 FAM110BQ8TC76 370 aa18.75■□□□□ 0.59
CLN3-219ENST00000565778 NUDT8Q8WV74 236 aa18.75■□□□□ 0.59
CLN3-219ENST00000565778 OR5P2Q8WZ92 322 aa18.75■□□□□ 0.59
CLN3-219ENST00000565778 FAM120BQ96EK7 910 aaKnown RBP18.75■□□□□ 0.59
CLN3-219ENST00000565778 C1GALT1C1Q96EU7 318 aa18.75■□□□□ 0.59
CLN3-219ENST00000565778 OTUB1Q96FW1 271 aaPredicted RBP18.75■□□□□ 0.59
CLN3-219ENST00000565778 PIGQQ9BRB3 760 aa18.75■□□□□ 0.59
CLN3-219ENST00000565778 ACBD3Q9H3P7 528 aa18.75■□□□□ 0.59
CLN3-219ENST00000565778 ZNF395Q9H8N7 513 aaPredicted RBP18.75■□□□□ 0.59
CLN3-219ENST00000565778 DNAJB12Q9NXW2 375 aaKnown RBP18.75■□□□□ 0.59
CLN3-219ENST00000565778 RAB21Q9UL25 225 aa18.75■□□□□ 0.59
CLN3-219ENST00000565778 MED12Q93074 2177 aa18.75■□□□□ 0.59
CLN3-219ENST00000565778 LINC01387J3KSC0 135 aa18.74■□□□□ 0.59
CLN3-219ENST00000565778 BIRC5O15392 142 aa18.74■□□□□ 0.59
CLN3-219ENST00000565778 NDUFB5O43674 189 aa18.74■□□□□ 0.59
CLN3-219ENST00000565778 SERPINE1P05121 402 aa18.74■□□□□ 0.59
CLN3-219ENST00000565778 HPGDP15428 266 aa18.74■□□□□ 0.59
CLN3-219ENST00000565778 PRPS1L1P21108 318 aa18.74■□□□□ 0.59
CLN3-219ENST00000565778 CCT3P49368 545 aaKnown RBP18.74■□□□□ 0.59
CLN3-219ENST00000565778 DIO3P55073 304 aa18.74■□□□□ 0.59
CLN3-219ENST00000565778 EEFSECP57772 596 aaKnown RBP18.74■□□□□ 0.59
CLN3-219ENST00000565778 ABCE1P61221 599 aaKnown RBP18.74■□□□□ 0.59
CLN3-219ENST00000565778 MAD2L1Q13257 205 aaPredicted RBP18.74■□□□□ 0.59
CLN3-219ENST00000565778 SPDYE7PQ495Y7 208 aa18.74■□□□□ 0.59
CLN3-219ENST00000565778 GLYR1Q49A26 553 aaPredicted RBP18.74■□□□□ 0.59
CLN3-219ENST00000565778 GCNT2Q8N0V5 402 aa18.74■□□□□ 0.59
CLN3-219ENST00000565778 KRTCAP2Q8N6L1 136 aa18.74■□□□□ 0.59
CLN3-219ENST00000565778 COX18Q8N8Q8 333 aa18.74■□□□□ 0.59
CLN3-219ENST00000565778 FAM222BQ8WU58 562 aa18.74■□□□□ 0.59
CLN3-219ENST00000565778 COQ8BQ96D53 544 aa18.74■□□□□ 0.59
CLN3-219ENST00000565778 PPP1R36Q96LQ0 422 aa18.74■□□□□ 0.59
CLN3-219ENST00000565778 SFXN3Q9BWM7 321 aa18.74■□□□□ 0.59
CLN3-219ENST00000565778 HHATLQ9HCP6 504 aa18.74■□□□□ 0.59
CLN3-219ENST00000565778 SSU72Q9NP77 194 aaKnown RBP18.74■□□□□ 0.59
CLN3-219ENST00000565778 SIRT3Q9NTG7 399 aaPredicted RBP18.74■□□□□ 0.59
CLN3-219ENST00000565778 CLCF1Q9UBD9 225 aa18.74■□□□□ 0.59
CLN3-219ENST00000565778 CSMD2Q7Z408 3487 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 OR2M5A3KFT3 312 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 TUBAL3A6NHL2 446 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 H3BML4 177 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 TM9SF1O15321 606 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 CFLARO15519 480 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 OXSR1O95747 527 aaPredicted RBP18.73■□□□□ 0.59
CLN3-219ENST00000565778 TGM6O95932 706 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 HMGN2P05204 90 aaKnown RBP18.73■□□□□ 0.59
CLN3-219ENST00000565778 TUBBP07437 444 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 G6PDP11413 515 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 TBXA2RP21731 343 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 EEF1A1P68104 462 aaKnown RBP18.73■□□□□ 0.59
CLN3-219ENST00000565778 POU6F2P78424 691 aaPredicted RBP18.73■□□□□ 0.59
CLN3-219ENST00000565778 EMX2Q04743 252 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 LASP1Q14847 261 aaKnown RBP18.73■□□□□ 0.59
CLN3-219ENST00000565778 PDCD2Q16342 344 aaPredicted RBP18.73■□□□□ 0.59
CLN3-219ENST00000565778 CPEB4Q17RY0 729 aaKnown RBP eCLIP18.73■□□□□ 0.59
CLN3-219ENST00000565778 PGS1Q32NB8 556 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 FLYWCH1Q4VC44 716 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 EEF1A1P5Q5VTE0 462 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 LUZP2Q86TE4 346 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 GATSQ8NAP1 163 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 ZIM3Q96PE6 472 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 RBM24Q9BX46 236 aaKnown RBP18.73■□□□□ 0.59
CLN3-219ENST00000565778 POLDIP3Q9BY77 421 aaKnown RBP18.73■□□□□ 0.59
CLN3-219ENST00000565778 UBQLN4Q9NRR5 601 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 FBXO34Q9NWN3 711 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 JKAMPQ9P055 326 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 KIAA1549Q9HCM3 1950 aa18.73■□□□□ 0.59
CLN3-219ENST00000565778 ESPNB1AK53 854 aa18.72■□□□□ 0.59
CLN3-219ENST00000565778 ALG1L2C9J202 215 aa18.72■□□□□ 0.59
CLN3-219ENST00000565778 SEC14L5O43304 696 aa18.72■□□□□ 0.59
CLN3-219ENST00000565778 CTAG2O75638 210 aa18.72■□□□□ 0.59
CLN3-219ENST00000565778 C6orf47O95873 294 aa18.72■□□□□ 0.59
CLN3-219ENST00000565778 MYZAPP0CAP1 466 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms