RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 ANKRD33BA6NCL7 494 aa15.77■□□□□ 0.12
CLN3-217ENST00000565354 ANGPT2O15123 496 aa15.77■□□□□ 0.12
CLN3-217ENST00000565354 CDC40O60508 579 aaKnown RBP eCLIP15.77■□□□□ 0.12
CLN3-217ENST00000565354 ICOSLGO75144 302 aa15.77■□□□□ 0.12
CLN3-217ENST00000565354 KCNK2O95069 426 aa15.77■□□□□ 0.12
CLN3-217ENST00000565354 AGR2O95994 175 aa15.77■□□□□ 0.12
CLN3-217ENST00000565354 HPGDP15428 266 aa15.77■□□□□ 0.12
CLN3-217ENST00000565354 MAP3K8P41279 467 aa15.77■□□□□ 0.12
CLN3-217ENST00000565354 CA7P43166 264 aa15.77■□□□□ 0.12
CLN3-217ENST00000565354 SNTA1Q13424 505 aa15.77■□□□□ 0.12
CLN3-217ENST00000565354 TNFAIP8L2Q6P589 184 aaPredicted RBP15.77■□□□□ 0.12
CLN3-217ENST00000565354 C16orf62Q7Z3J2 963 aa15.77■□□□□ 0.12
CLN3-217ENST00000565354 ZNF385DQ9H6B1 395 aa15.77■□□□□ 0.12
CLN3-217ENST00000565354 ZFP64Q9NPA5 681 aa15.77■□□□□ 0.12
CLN3-217ENST00000565354 SERHLQ9NQF3 203 aa15.77■□□□□ 0.12
CLN3-217ENST00000565354 SEC14L3Q9UDX4 400 aa15.77■□□□□ 0.12
CLN3-217ENST00000565354 LEF1Q9UJU2 399 aaPredicted RBP15.77■□□□□ 0.12
CLN3-217ENST00000565354 NIPBLQ6KC79 2804 aaeCLIP15.77■□□□□ 0.11
CLN3-217ENST00000565354 GNB5O14775 395 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 SCO2O43819 266 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 UNC5CO95185 931 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 UTS2O95399 124 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 AK1P00568 194 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 CAPN3P20807 821 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 MST1P26927 711 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 SSTR2P30874 369 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 EVI2BP34910 448 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 TOMM20Q15388 145 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 MAPRE2Q15555 327 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.76■□□□□ 0.11
CLN3-217ENST00000565354 DCST2Q5T1A1 773 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 CCNJQ5T5M9 372 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 TMEM81Q6P7N7 255 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 RNF130Q86XS8 419 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 OR1J4Q8NGS1 313 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 PNPT1Q8TCS8 783 aaKnown RBP15.76■□□□□ 0.11
CLN3-217ENST00000565354 XAGE5Q8WWM1 108 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 GTF2H4Q92759 462 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 TMEM41AQ96HV5 264 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 TBL1XR1Q9BZK7 514 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 GALNT9Q9HCQ5 603 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 SDHAF3Q9NRP4 125 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 ABCG2Q9UNQ0 655 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 NDUFAF1Q9Y375 327 aa15.76■□□□□ 0.11
CLN3-217ENST00000565354 SPG11Q96JI7 2443 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 A0A096LPI6 279 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 A0A1W2PP18 115 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 C2orf72A6NCS6 295 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 CCDC22O60826 627 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 IGKV1D-16P01601 117 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 ZCCHC18P0CG32 403 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 OR12D1P0DN82 309 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 DRD4P21917 467 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 GDF1P27539 372 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 TXNL4AP83876 142 aaKnown RBP15.75■□□□□ 0.11
CLN3-217ENST00000565354 HPCAP84074 193 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 RBPJQ06330 500 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 CPEB4Q17RY0 729 aaKnown RBP eCLIP15.75■□□□□ 0.11
CLN3-217ENST00000565354 GTDC1Q4AE62 458 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 KRTCAP3Q53RY4 240 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 EXOSC6Q5RKV6 272 aaKnown RBP15.75■□□□□ 0.11
CLN3-217ENST00000565354 XKRXQ6PP77 449 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 FAM109AQ8N4B1 249 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 MIPOL1Q8TD10 442 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 RAB8BQ92930 207 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 DTNBP1Q96EV8 351 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 GPR137Q96N19 417 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 DEFB127Q9H1M4 99 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 EXO5Q9H790 373 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 PROK2Q9HC23 129 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 PPP4R1LQ9P1A2 415 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 WIF1Q9Y5W5 379 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 KCNE3Q9Y6H6 103 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 CAPN7Q9Y6W3 813 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 NUP214P35658 2090 aaPredicted RBP15.75■□□□□ 0.11
CLN3-217ENST00000565354 EML6Q6ZMW3 1958 aa15.75■□□□□ 0.11
CLN3-217ENST00000565354 SCDO00767 359 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 ASNA1O43681 348 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 TRIM3O75382 744 aaPredicted RBP15.74■□□□□ 0.11
CLN3-217ENST00000565354 LCN1P31025 176 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 CRATP43155 626 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 MAGEA5P43359 124 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 MAN2A2P49641 1150 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 FOXO1Q12778 655 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 KLF10Q13118 480 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 STX5Q13190 355 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 GRAMD1BQ3KR37 738 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 MMEL1Q495T6 779 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 FLYWCH1Q4VC44 716 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 GPAT3Q53EU6 434 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 PAGE3Q5JUK9 113 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 RNFT1Q5M7Z0 435 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 GHDCQ8N2G8 530 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 TMEM251Q8N6I4 163 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 FAM110BQ8TC76 370 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 ZFP90Q8TF47 636 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 TSPEARQ8WU66 669 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 PAIP1Q9H074 479 aaKnown RBP15.74■□□□□ 0.11
CLN3-217ENST00000565354 RAD21L1Q9H4I0 556 aa15.74■□□□□ 0.11
CLN3-217ENST00000565354 SERHL2Q9H4I8 314 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms