RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CRHR1P34998 444 aa15.4■□□□□ 0.06
CLN3-216ENST00000565316 CCT5P48643 541 aa15.4■□□□□ 0.06
CLN3-216ENST00000565316 NKX6-1P78426 367 aaPredicted RBP15.4■□□□□ 0.06
CLN3-216ENST00000565316 GRAMD1BQ3KR37 738 aa15.4■□□□□ 0.06
CLN3-216ENST00000565316 CFAP157Q5JU67 520 aa15.4■□□□□ 0.06
CLN3-216ENST00000565316 RNF165Q6ZSG1 346 aa15.4■□□□□ 0.06
CLN3-216ENST00000565316 ZNF551Q7Z340 670 aaPredicted RBP15.4■□□□□ 0.06
CLN3-216ENST00000565316 GGNQ86UU5 652 aa15.4■□□□□ 0.06
CLN3-216ENST00000565316 FAM111AQ96PZ2 611 aa15.4■□□□□ 0.06
CLN3-216ENST00000565316 TBL1XR1Q9BZK7 514 aa15.4■□□□□ 0.06
CLN3-216ENST00000565316 KLHL28Q9NXS3 571 aa15.4■□□□□ 0.06
CLN3-216ENST00000565316 ZNF226Q9NYT6 803 aa15.4■□□□□ 0.06
CLN3-216ENST00000565316 C6orf203Q9P0P8 240 aaPredicted RBP15.4■□□□□ 0.06
CLN3-216ENST00000565316 ZANQ9Y493 2812 aa15.39■□□□□ 0.05
CLN3-216ENST00000565316 ALG1L2C9J202 215 aa15.39■□□□□ 0.05
CLN3-216ENST00000565316 H3BML4 177 aa15.39■□□□□ 0.05
CLN3-216ENST00000565316 C16orf97H3BN30 126 aa15.39■□□□□ 0.05
CLN3-216ENST00000565316 PDPK1O15530 556 aa15.39■□□□□ 0.05
CLN3-216ENST00000565316 NKX2-2O95096 273 aa15.39■□□□□ 0.05
CLN3-216ENST00000565316 KCNH1O95259 989 aa15.39■□□□□ 0.05
CLN3-216ENST00000565316 POU2F1P14859 743 aa15.39■□□□□ 0.05
CLN3-216ENST00000565316 FRKP42685 505 aaPredicted RBP15.39■□□□□ 0.05
CLN3-216ENST00000565316 RPS3AP61247 264 aaKnown RBP15.39■□□□□ 0.05
CLN3-216ENST00000565316 SIRPAP78324 504 aa15.39■□□□□ 0.05
CLN3-216ENST00000565316 PON3Q15166 354 aa15.39■□□□□ 0.05
CLN3-216ENST00000565316 TDRPQ86YL5 185 aa15.39■□□□□ 0.05
CLN3-216ENST00000565316 LRRC75A-AS1Q8N1F1 130 aa15.39■□□□□ 0.05
CLN3-216ENST00000565316 KIF18AQ8NI77 898 aa15.39■□□□□ 0.05
CLN3-216ENST00000565316 FAM110BQ8TC76 370 aa15.39■□□□□ 0.05
CLN3-216ENST00000565316 PIK3R3Q92569 461 aa15.39■□□□□ 0.05
CLN3-216ENST00000565316 MED18Q9BUE0 208 aa15.39■□□□□ 0.05
CLN3-216ENST00000565316 LRTM1Q9HBL6 345 aa15.39■□□□□ 0.05
CLN3-216ENST00000565316 HHATLQ9HCP6 504 aa15.39■□□□□ 0.05
CLN3-216ENST00000565316 C1orf109Q9NX04 203 aa15.39■□□□□ 0.05
CLN3-216ENST00000565316 PCNX3Q9H6A9 2034 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 GIMAP1-GIMAP5A0A087WTJ2 511 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 A0A087WZY1 265 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 SLC28A1O00337 649 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 AQP8O94778 261 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 INHBBP09529 407 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 FCGR2AP12318 317 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 CPA3P15088 417 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 ZNF17P17021 662 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 LOXP28300 417 aaPredicted RBP15.38■□□□□ 0.05
CLN3-216ENST00000565316 RFX3P48380 749 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 HSPB3Q12988 150 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 PDE7AQ13946 482 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 CPEB4Q17RY0 729 aaKnown RBP eCLIP15.38■□□□□ 0.05
CLN3-216ENST00000565316 VPS26BQ4G0F5 336 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 ZNF385BQ569K4 471 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 CLEC6AQ6EIG7 209 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 Q6ZSR9 355 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 FAM214BQ7L5A3 538 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 GTPBP8Q8N3Z3 284 aaPredicted RBP15.38■□□□□ 0.05
CLN3-216ENST00000565316 CDRT4Q8N9R6 151 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 ZNF610Q8N9Z0 462 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 CEP70Q8NHQ1 597 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 GPR151Q8TDV0 419 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 PIGTQ969N2 578 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 GFM2Q969S9 779 aaKnown RBP15.38■□□□□ 0.05
CLN3-216ENST00000565316 CIDECQ96AQ7 238 aaPredicted RBP15.38■□□□□ 0.05
CLN3-216ENST00000565316 GIMAP5Q96F15 307 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 CCT7Q99832 543 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 SMR3AQ99954 134 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 RHOXF2Q9BQY4 288 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 C12orf65Q9H3J6 166 aaKnown RBP15.38■□□□□ 0.05
CLN3-216ENST00000565316 REEP4Q9H6H4 257 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 PPCSQ9HAB8 311 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 EQTNQ9NQ60 294 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 PROCRQ9UNN8 238 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 PTGDR2Q9Y5Y4 395 aa15.38■□□□□ 0.05
CLN3-216ENST00000565316 ARID1AO14497 2285 aa15.37■□□□□ 0.05
CLN3-216ENST00000565316 C7orf72A4D263 438 aa15.37■□□□□ 0.05
CLN3-216ENST00000565316 SHISA8B8ZZ34 492 aa15.37■□□□□ 0.05
CLN3-216ENST00000565316 ARHGEF9O43307 516 aa15.37■□□□□ 0.05
CLN3-216ENST00000565316 RGS14O43566 566 aa15.37■□□□□ 0.05
CLN3-216ENST00000565316 SHBGP04278 402 aa15.37■□□□□ 0.05
CLN3-216ENST00000565316 TBXA2RP21731 343 aa15.37■□□□□ 0.05
CLN3-216ENST00000565316 ACKR1Q16570 336 aa15.37■□□□□ 0.05
CLN3-216ENST00000565316 EXOSC6Q5RKV6 272 aaKnown RBP15.37■□□□□ 0.05
CLN3-216ENST00000565316 LIPMQ5VYY2 423 aa15.37■□□□□ 0.05
CLN3-216ENST00000565316 ANKRD26P1Q6NSI1 321 aa15.37■□□□□ 0.05
CLN3-216ENST00000565316 C22orf34Q6ZV56 151 aa15.37■□□□□ 0.05
CLN3-216ENST00000565316 EXOC3L1Q86VI1 746 aa15.37■□□□□ 0.05
CLN3-216ENST00000565316 EIF1ADQ8N9N8 165 aaKnown RBP15.37■□□□□ 0.05
CLN3-216ENST00000565316 OR2T11Q8NH01 316 aa15.37■□□□□ 0.05
CLN3-216ENST00000565316 OR4C3Q8NH37 302 aa15.37■□□□□ 0.05
CLN3-216ENST00000565316 CAVIN3Q969G5 261 aa15.37■□□□□ 0.05
CLN3-216ENST00000565316 ZBED6CLQ96FA7 236 aaPredicted RBP15.37■□□□□ 0.05
CLN3-216ENST00000565316 PIK3IP1Q96FE7 263 aa15.37■□□□□ 0.05
CLN3-216ENST00000565316 ADGRG7Q96K78 797 aa15.37■□□□□ 0.05
CLN3-216ENST00000565316 PLSCR4Q9NRQ2 329 aa15.37■□□□□ 0.05
CLN3-216ENST00000565316 ACSS1Q9NUB1 689 aaPredicted RBP15.37■□□□□ 0.05
CLN3-216ENST00000565316 STOML1Q9UBI4 398 aa15.37■□□□□ 0.05
CLN3-216ENST00000565316 AZIN1O14977 448 aa15.36■□□□□ 0.05
CLN3-216ENST00000565316 ADAMDEC1O15204 470 aa15.36■□□□□ 0.05
CLN3-216ENST00000565316 SMPD2O60906 423 aa15.36■□□□□ 0.05
CLN3-216ENST00000565316 OXSR1O95747 527 aaPredicted RBP15.36■□□□□ 0.05
CLN3-216ENST00000565316 NEFHP12036 1026 aa15.36■□□□□ 0.05
CLN3-216ENST00000565316 SDC1P18827 310 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms