RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 ZCCHC11Q5TAX3 1644 aaKnown RBP3.66□□□□□ -1.82
LINC00560-201ENST00000564593 SPATA31E1Q6ZUB1 1445 aa3.66□□□□□ -1.82
LINC00560-201ENST00000564593 TTC37Q6PGP7 1564 aa3.66□□□□□ -1.82
LINC00560-201ENST00000564593 NUP155O75694 1391 aa3.66□□□□□ -1.82
LINC00560-201ENST00000564593 EIF3AQ14152 1382 aaKnown RBP3.66□□□□□ -1.82
LINC00560-201ENST00000564593 ABCC1P33527 1531 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 ATP10AO60312 1499 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 DEPDC5O75140 1603 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 TRIM49BA6NDI0 452 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 CCT8L1PA6NM43 557 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 NOL3O60936 208 aaKnown RBP3.65□□□□□ -1.82
LINC00560-201ENST00000564593 ZNF253O75346 499 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 PRAMEF12O95522 483 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 CYLC1P35663 651 aaPredicted RBP3.65□□□□□ -1.82
LINC00560-201ENST00000564593 OSTNP61366 133 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 KLHL30Q0D2K2 578 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 SLC22A6Q4U2R8 563 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 EIPR1Q53HC9 387 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 CYBRD1Q53TN4 286 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 TCTEX1D4Q5JR98 221 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 SLX4IPQ5VYV7 408 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 ZNF600Q6ZNG1 722 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 CEACAM19Q7Z692 300 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 ZNF573Q86YE8 665 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 ZNF416Q9BWM5 594 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 TBC1D10AQ9BXI6 508 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 COG4Q9H9E3 785 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 POLD4Q9HCU8 107 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 SLC35D1Q9NTN3 355 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 CLEC5AQ9NY25 188 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 SENP1Q9P0U3 644 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 BARX2Q9UMQ3 279 aaPredicted RBP3.65□□□□□ -1.82
LINC00560-201ENST00000564593 NTNG1Q9Y2I2 539 aa3.65□□□□□ -1.82
LINC00560-201ENST00000564593 BRD4O60885 1362 aaPredicted RBP3.65□□□□□ -1.83
LINC00560-201ENST00000564593 PRDM15P57071 1507 aaPredicted RBP3.65□□□□□ -1.83
LINC00560-201ENST00000564593 COL5A2P05997 1499 aaPredicted RBP3.65□□□□□ -1.83
LINC00560-201ENST00000564593 SMG6Q86US8 1419 aaKnown RBP3.64□□□□□ -1.83
LINC00560-201ENST00000564593 LRRC30A6NM36 301 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 SAP18O00422 153 aaKnown RBP3.64□□□□□ -1.83
LINC00560-201ENST00000564593 PPIHO43447 177 aaKnown RBP3.64□□□□□ -1.83
LINC00560-201ENST00000564593 GPRIN2O60269 458 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 LCMT2O60294 686 aaKnown RBP3.64□□□□□ -1.83
LINC00560-201ENST00000564593 KRT6BP04259 564 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 IGFBP1P08833 259 aaPredicted RBP3.64□□□□□ -1.83
LINC00560-201ENST00000564593 BCL3P20749 454 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 KRT6CP48668 564 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 ARHGDIBP52566 201 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 IST1P53990 364 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 RPS6P62753 249 aaKnown RBP3.64□□□□□ -1.83
LINC00560-201ENST00000564593 SLC10A1Q14973 349 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 DCAF4L1Q3SXM0 396 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 TMEM41BQ5BJD5 291 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 NIPAL3Q6P499 406 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 CCBE1Q6UXH8 406 aaPredicted RBP3.64□□□□□ -1.83
LINC00560-201ENST00000564593 CENPUQ71F23 418 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 CENPLQ8N0S6 344 aaPredicted RBP3.64□□□□□ -1.83
LINC00560-201ENST00000564593 STKLD1Q8NE28 680 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 AGAP11Q8TF27 550 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 SYAP1Q96A49 352 aaPredicted RBP3.64□□□□□ -1.83
LINC00560-201ENST00000564593 TESK2Q96S53 571 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 APOL2Q9BQE5 337 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 MRPL13Q9BYD1 178 aaKnown RBP3.64□□□□□ -1.83
LINC00560-201ENST00000564593 AGPAT5Q9NUQ2 364 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 FAM120CQ9NX05 1096 aaKnown RBP3.64□□□□□ -1.83
LINC00560-201ENST00000564593 IMPAD1Q9NX62 359 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 RDH8Q9NYR8 311 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 AP4B1Q9Y6B7 739 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 KDM5AP29375 1690 aaKnown RBP3.64□□□□□ -1.83
LINC00560-201ENST00000564593 TRPM2O94759 1503 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.64□□□□□ -1.83
LINC00560-201ENST00000564593 KANK1Q14678 1352 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 BCORL1Q5H9F3 1711 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 SYNMO15061 1565 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 RTEL1-TNFRSF6BF6WH68 1400 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 IQGAP1P46940 1657 aa3.64□□□□□ -1.83
LINC00560-201ENST00000564593 A0A087WWV3 80 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 ZNF840PA6NDX5 716 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 EFCAB7A8K855 629 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 SDHDO14521 159 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 TM9SF1O15321 606 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 PEX11AO75192 247 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 RHBDL1O75783 438 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 ANP32DO95626 131 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 MBD3O95983 291 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 SDC1P18827 310 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 IDSP22304 550 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 IGFBP5P24593 272 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 KIF5BP33176 963 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 ACAA2P42765 397 aaKnown RBP3.63□□□□□ -1.83
LINC00560-201ENST00000564593 PTGER3P43115 390 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 EMDP50402 254 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 NUCB2P80303 420 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 RIPPLY2Q5TAB7 128 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 SULT1C3Q6IMI6 304 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 PARGQ86W56 976 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.63□□□□□ -1.83
LINC00560-201ENST00000564593 UPRTQ96BW1 309 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 C1orf147Q96MC9 270 aaPredicted RBP3.63□□□□□ -1.83
LINC00560-201ENST00000564593 GPA33Q99795 319 aa3.63□□□□□ -1.83
LINC00560-201ENST00000564593 GSDMCQ9BYG8 508 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms