RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 WDR41Q9HAD4 459 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 ZFP14Q9HCL3 533 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 OLFML3Q9NRN5 406 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 B3GNT2Q9NY97 397 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 GLTPQ9NZD2 209 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 SLCO3A1Q9UIG8 710 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 UTP11Q9Y3A2 253 aaKnown RBP4.73□□□□□ -1.65
VPS35-205ENST00000563984 NPTNQ9Y639 398 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 GRIN2BQ13224 1484 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 RAPGEF2Q9Y4G8 1499 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 WIZO95785 1651 aa4.73□□□□□ -1.65
VPS35-205ENST00000563984 SALL1Q9NSC2 1324 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 TARBP1Q13395 1621 aaKnown RBP4.72□□□□□ -1.65
VPS35-205ENST00000563984 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.72□□□□□ -1.65
VPS35-205ENST00000563984 FAM237BA0A1B0GVD1 139 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 A0A1W2PQL4 384 aaPredicted RBP4.72□□□□□ -1.65
VPS35-205ENST00000563984 ANKRD61A6NGH8 418 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 CCT8L1PA6NM43 557 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 PP2D1A8MPX8 630 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 TMEM189-UBE2V1I3L0A0 370 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 KCNK1O00180 336 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 ANKRD28O15084 1053 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 FADS1O60427 444 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 UGT1A9O60656 530 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 AVILO75366 819 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 HOXD4P09016 255 aaPredicted RBP4.72□□□□□ -1.65
VPS35-205ENST00000563984 OR52Z1P0C646 297 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 NBEAP1P0C6P0 100 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 ZNF806P0C7X5 589 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 ETS2P15036 469 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 NPPBP16860 134 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 PTGER4P35408 488 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 RPL5P46777 297 aaKnown RBP4.72□□□□□ -1.65
VPS35-205ENST00000563984 GPR12P47775 334 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 COMPP49747 757 aaPredicted RBP4.72□□□□□ -1.65
VPS35-205ENST00000563984 RGS4P49798 205 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 HLCSP50747 726 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 IDH3GP51553 393 aaPredicted RBP4.72□□□□□ -1.65
VPS35-205ENST00000563984 HSPA2P54652 639 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 CDH13P55290 713 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 RPS13P62277 151 aaKnown RBP4.72□□□□□ -1.65
VPS35-205ENST00000563984 MRPS22P82650 360 aaKnown RBP4.72□□□□□ -1.65
VPS35-205ENST00000563984 HSF1Q00613 529 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 CNTN2Q02246 1040 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 ID2Q02363 134 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 CFHR1Q03591 330 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 HSF2Q03933 536 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 MBTD1Q05BQ5 628 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 SELENBP1Q13228 472 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 TDGQ13569 410 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 ITIH4Q14624 930 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 MTF1Q14872 753 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 PGM5Q15124 567 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 TWIST1Q15672 202 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 MAPK11Q15759 364 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 EXOC3L4Q17RC7 722 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 ZBED5Q49AG3 693 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 C5orf47Q569G3 176 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 WASHC2DQ5SRD0 308 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 ZNF691Q5VV52 312 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 FAHD2BQ6P2I3 314 aaPredicted RBP4.72□□□□□ -1.65
VPS35-205ENST00000563984 XKRXQ6PP77 449 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 RRM2BQ7LG56 351 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 ARHGAP12Q8IWW6 846 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 MTURNQ8N3F0 131 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 SVOPLQ8N434 492 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 CCDC71LQ8N9Z2 235 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 NECAP1Q8NC96 275 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 STXBP6Q8NFX7 210 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 OR9A2Q8NGT5 310 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 OR2L2Q8NH16 312 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 HM13Q8TCT9 377 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 RNASE8Q8TDE3 154 aaKnown RBP4.72□□□□□ -1.65
VPS35-205ENST00000563984 CXorf40AQ8TE69 158 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 WFIKKN2Q8TEU8 576 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 NR4A3Q92570 626 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 DNASE1L2Q92874 299 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 HGDQ93099 445 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 TMEM203Q969S6 136 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 ULK4Q96C45 1275 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 FAHD2AQ96GK7 314 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 THOC3Q96J01 351 aaKnown RBP4.72□□□□□ -1.65
VPS35-205ENST00000563984 OR5M11Q96RB7 305 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 LGMNQ99538 433 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 GDF15Q99988 308 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 KLHDC3Q9BQ90 382 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 SLC30A2Q9BRI3 323 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 WDR83Q9BRX9 315 aaKnown RBP4.72□□□□□ -1.65
VPS35-205ENST00000563984 TRMOQ9BU70 441 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 TRAF4Q9BUZ4 470 aaPredicted RBP4.72□□□□□ -1.65
VPS35-205ENST00000563984 ALG12Q9BV10 488 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 LRRC2Q9BYS8 371 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 UCK2Q9BZX2 261 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 SRRQ9GZT4 340 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 NUAK2Q9H093 628 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 CSTL1Q9H114 145 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 UBQLN3Q9H347 655 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 WDR55Q9H6Y2 383 aaPredicted RBP4.72□□□□□ -1.65
VPS35-205ENST00000563984 UGT1A7Q9HAW7 530 aa4.72□□□□□ -1.65
VPS35-205ENST00000563984 UGT1A10Q9HAW8 530 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms