RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 MAP3K8P41279 467 aa15.25■□□□□ 0.03
CLK3-210ENST00000563112 PTGR1Q14914 329 aa15.25■□□□□ 0.03
CLK3-210ENST00000563112 GRAMD1BQ3KR37 738 aa15.25■□□□□ 0.03
CLK3-210ENST00000563112 LSM12Q3MHD2 195 aaKnown RBP15.25■□□□□ 0.03
CLK3-210ENST00000563112 GLYR1Q49A26 553 aaPredicted RBP15.25■□□□□ 0.03
CLK3-210ENST00000563112 MFSD12Q6NUT3 480 aa15.25■□□□□ 0.03
CLK3-210ENST00000563112 P4HA3Q7Z4N8 544 aa15.25■□□□□ 0.03
CLK3-210ENST00000563112 ADGRE4PQ86SQ3 457 aa15.25■□□□□ 0.03
CLK3-210ENST00000563112 EXOC3L1Q86VI1 746 aa15.25■□□□□ 0.03
CLK3-210ENST00000563112 COX18Q8N8Q8 333 aa15.25■□□□□ 0.03
CLK3-210ENST00000563112 SLC16A11Q8NCK7 471 aa15.25■□□□□ 0.03
CLK3-210ENST00000563112 OR7A2PQ8NGA2 310 aa15.25■□□□□ 0.03
CLK3-210ENST00000563112 FBXO30Q8TB52 745 aa15.25■□□□□ 0.03
CLK3-210ENST00000563112 OR5P2Q8WZ92 322 aa15.25■□□□□ 0.03
CLK3-210ENST00000563112 JADE3Q92613 823 aa15.25■□□□□ 0.03
CLK3-210ENST00000563112 GIMAP5Q96F15 307 aa15.25■□□□□ 0.03
CLK3-210ENST00000563112 CHMP6Q96FZ7 201 aa15.25■□□□□ 0.03
CLK3-210ENST00000563112 C3orf30Q96M34 536 aa15.25■□□□□ 0.03
CLK3-210ENST00000563112 PIGQQ9BRB3 760 aa15.25■□□□□ 0.03
CLK3-210ENST00000563112 SFXN3Q9BWM7 321 aa15.25■□□□□ 0.03
CLK3-210ENST00000563112 ZCCHC3Q9NUD5 404 aaKnown RBP15.25■□□□□ 0.03
CLK3-210ENST00000563112 SNX8Q9Y5X2 465 aa15.25■□□□□ 0.03
CLK3-210ENST00000563112 KIAA1549Q9HCM3 1950 aa15.25■□□□□ 0.03
CLK3-210ENST00000563112 TEP1Q99973 2627 aaKnown RBP15.25■□□□□ 0.03
CLK3-210ENST00000563112 C17orf51A8MQB3 221 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 TM9SF1O15321 606 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 SNUPNO95149 360 aaKnown RBP15.24■□□□□ 0.03
CLK3-210ENST00000563112 IGKV1D-16P01601 117 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 SERPINE1P05121 402 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 MYZAPP0CAP1 466 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 ACP2P11117 423 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 LAMP1P11279 417 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 HPGDP15428 266 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 PRPS1L1P21108 318 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 B3GALT5-AS1P59052 145 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 SNTB1Q13884 538 aaKnown RBP15.24■□□□□ 0.03
CLK3-210ENST00000563112 SPDYE7PQ495Y7 208 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 FLYWCH1Q4VC44 716 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 CEP85LQ5SZL2 805 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 UBQLNLQ8IYU4 475 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 FAM222BQ8WU58 562 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 INTS12Q96CB8 462 aaKnown RBP15.24■□□□□ 0.03
CLK3-210ENST00000563112 FAM120BQ96EK7 910 aaKnown RBP15.24■□□□□ 0.03
CLK3-210ENST00000563112 C1GALT1C1Q96EU7 318 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 PKNOX2Q96KN3 472 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 ZIM3Q96PE6 472 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 G6PC3Q9BUM1 346 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 RTN4RQ9BZR6 473 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 CRIM1Q9NZV1 1036 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 CLCF1Q9UBD9 225 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 STOML1Q9UBI4 398 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 RAB21Q9UL25 225 aa15.24■□□□□ 0.03
CLK3-210ENST00000563112 IGLV3-32A0A0A0MS00 114 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 B4DXG7 233 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 ALG1L2C9J202 215 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 NDUFB5O43674 189 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 SOX30O94993 753 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 KCNK2O95069 426 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 NGFRP08138 427 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 KRT16P08779 473 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 TBXA2RP21731 343 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 CCT3P49368 545 aaKnown RBP15.23■□□□□ 0.03
CLK3-210ENST00000563112 DIO3P55073 304 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 ABCE1P61221 599 aaKnown RBP15.23■□□□□ 0.03
CLK3-210ENST00000563112 POU6F2P78424 691 aaPredicted RBP15.23■□□□□ 0.03
CLK3-210ENST00000563112 EMX2Q04743 252 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 FOXF2Q12947 444 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 CHI3L2Q15782 390 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 DUSP5Q16690 384 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 CPEB4Q17RY0 729 aaKnown RBP eCLIP15.23■□□□□ 0.03
CLK3-210ENST00000563112 SMU1Q2TAY7 513 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 OR2A2Q6IF42 318 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 FIGNL1Q6PIW4 674 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 KIRREL3Q8IZU9 778 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 OR56A1Q8NGH5 318 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 FAM110BQ8TC76 370 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 COQ8BQ96D53 544 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 C16orf58Q96GQ5 468 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 YIPF4Q9BSR8 244 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 PIGMQ9H3S5 423 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 KCNK9Q9NPC2 374 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 DNAJB12Q9NXW2 375 aaKnown RBP15.23■□□□□ 0.03
CLK3-210ENST00000563112 JKAMPQ9P055 326 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 EPB41L3Q9Y2J2 1087 aaPredicted RBP15.23■□□□□ 0.03
CLK3-210ENST00000563112 ZNF337Q9Y3M9 751 aa15.23■□□□□ 0.03
CLK3-210ENST00000563112 OR2M5A3KFT3 312 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 TUBAL3A6NHL2 446 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 SLC22A20A6NK97 555 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 SCDO00767 359 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 CFLARO15519 480 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 HCRTR2O43614 444 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 GMFGO60234 142 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 OXSR1O95747 527 aaPredicted RBP15.22■□□□□ 0.03
CLK3-210ENST00000563112 HMGN2P05204 90 aaKnown RBP15.22■□□□□ 0.03
CLK3-210ENST00000563112 CPA2P48052 419 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 RPS3AP61247 264 aaKnown RBP15.22■□□□□ 0.03
CLK3-210ENST00000563112 SORDQ00796 357 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 TP53BP2Q13625 1128 aa15.22■□□□□ 0.03
CLK3-210ENST00000563112 LASP1Q14847 261 aaKnown RBP15.22■□□□□ 0.03
CLK3-210ENST00000563112 APOOLQ6UXV4 268 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms